IVF0005340 (gene) Melon (IVF77) v1

Overview
NameIVF0005340
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 19073791 .. 19073949 (+)
RNA-Seq ExpressionIVF0005340
SyntenyIVF0005340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCGTTGATTTCAAGGGAGTGGGCAGGTGGGGGATGGAAAATGCGGAAGAACTAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATGGGTAAGGCCTCGGGAAAGGGAAAGGAGAAGAGGGAGAAAGGATTGTGCAGATAG

mRNA sequence

ATGAAATGCGTTGATTTCAAGGGAGTGGGCAGGTGGGGGATGGAAAATGCGGAAGAACTAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATGGGTAAGGCCTCGGGAAAGGGAAAGGAGAAGAGGGAGAAAGGATTGTGCAGATAG

Coding sequence (CDS)

ATGAAATGCGTTGATTTCAAGGGAGTGGGCAGGTGGGGGATGGAAAATGCGGAAGAACTAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATGGGTAAGGCCTCGGGAAAGGGAAAGGAGAAGAGGGAGAAAGGATTGTGCAGATAG

Protein sequence

MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGKEKREKGLCR
Homology
[Close]
BLAST of IVF0005340 vs. ExPASy TrEMBL
Match: A0A5D3CU33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00120 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 44
          MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK
Sbjct: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 43

[Close]
BLAST of IVF0005340 vs. ExPASy TrEMBL
Match: A0A0A0LKD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062670 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 44
          MKCVDFK VGRWGMENAE  RKMEGGCGNFGVEM+GKASGKGK
Sbjct: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGK 43

[Close]
BLAST of IVF0005340 vs. NCBI nr
Match: KAA0047568.1 (hypothetical protein E6C27_scaffold115G00300 [Cucumis melo var. makuwa] >TYK14962.1 hypothetical protein E5676_scaffold2754G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 9.03e-24
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 43
          MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK
Sbjct: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 43

[Close]
BLAST of IVF0005340 vs. NCBI nr
Match: KGN61192.1 (hypothetical protein Csa_006000 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.06e-20
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGK 43
          MKCVDFK VGRWGMENAE  RKMEGGCGNFGVEM+GKASGKGK
Sbjct: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGK 43

The following BLAST results are available for this feature:
BLAST of IVF0005340 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0005340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CU332.0e-16100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LKD21.6e-1390.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062670 PE=4 SV=1[more]
BLAST of IVF0005340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047568.19.03e-24100.00hypothetical protein E6C27_scaffold115G00300 [Cucumis melo var. makuwa] >TYK1496... [more]
KGN61192.16.06e-2090.70hypothetical protein Csa_006000 [Cucumis sativus][more]
BLAST of IVF0005340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005340.1IVF0005340.1mRNA