IVF0005310 (gene) Melon (IVF77) v1

Overview


Name	IVF0005310
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ulp1-like peptidase
Location	chr02: 16406775 .. 16407047 (-)
RNA-Seq Expression	IVF0005310
Synteny	IVF0005310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGGACTACGAAGAAGGAGGTGGTGAGGATATGGGGTACAAATGAGGACCCCGACATTGGTGTCGTCAATCCCGTTGTGGTCCCAGACCTAGATGTCGATAGAAACGATATAGAAGTTAGCCAAGAAGATAAGTCGACAGATCCAATGGTAAATGCATCAAAGATCCTCATTAAAGATGTCGGGGTTCTCGTTGTGCCTATCGATAGTAGCGATGTTGAAGATGGCGTGCCACATTTTCCGATTCTTCCATCTCAAACTACAATCTAA

mRNA sequence

ATGATGAGGACTACGAAGAAGGAGGTGGTGAGGATATGGGGTACAAATGAGGACCCCGACATTGGTGTCGTCAATCCCGTTGTGGTCCCAGACCTAGATGTCGATAGAAACGATATAGAAGTTAGCCAAGAAGATAAGTCGACAGATCCAATGGTAAATGCATCAAAGATCCTCATTAAAGATGTCGGGGTTCTCGTTGTGCCTATCGATAGTAGCGATGTTGAAGATGGCGTGCCACATTTTCCGATTCTTCCATCTCAAACTACAATCTAA

Coding sequence (CDS)

ATGATGAGGACTACGAAGAAGGAGGTGGTGAGGATATGGGGTACAAATGAGGACCCCGACATTGGTGTCGTCAATCCCGTTGTGGTCCCAGACCTAGATGTCGATAGAAACGATATAGAAGTTAGCCAAGAAGATAAGTCGACAGATCCAATGGTAAATGCATCAAAGATCCTCATTAAAGATGTCGGGGTTCTCGTTGTGCCTATCGATAGTAGCGATGTTGAAGATGGCGTGCCACATTTTCCGATTCTTCCATCTCAAACTACAATCTAA

Protein sequence

MMRTTKKEVVRIWGTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSDVEDGVPHFPILPSQTTI

Homology

[Close]

BLAST of IVF0005310 vs. ExPASy TrEMBL
Match: A0A5D3DTY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00110 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 14  GTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSD 73
           GTNEDPD+GV++ VV+ DLD  RNDIE  Q+++    MV+AS++ I+D  + VVP+D SD
Sbjct: 96  GTNEDPDVGVIDHVVILDLDAVRNDIEADQQEELVGAMVDASEVSIEDAWIFVVPMDYSD 155

Query: 74  VEDGVPHFPILPS 87
           VEDGVP FPIL S
Sbjct: 156 VEDGVPPFPILSS 168

[Close]

BLAST of IVF0005310 vs. ExPASy TrEMBL
Match: A0A5D3BBS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00910 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 14  GTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSD 73
           GTNEDP++GVVNPVVVP L+ ++NDIE  QE++S++P ++        + VL+VPID S+
Sbjct: 98  GTNEDPNVGVVNPVVVPYLNANKNDIESGQEEESSNPTIDT-------LEVLIVPIDCSN 157

Query: 74  VEDGVPHFPILPS 87
           VEDG+P FPI+PS
Sbjct: 158 VEDGMPPFPIIPS 163

[Close]

BLAST of IVF0005310 vs. ExPASy TrEMBL
Match: A0A5D3BBP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001970 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 33 DVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSDVEDGVPHFPILP 86
          D +RNDI+  QE+   DP V+ASK+ I+D+ +LVVP+D SDV+DG+  FPILP
Sbjct: 45 DANRNDIQADQEE-LVDPTVDASKVPIEDIRILVVPMDCSDVQDGMSPFPILP 96

[Close]

BLAST of IVF0005310 vs. ExPASy TrEMBL
Match: A0A5D3BBE8 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 16  NEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVL-VVPIDSSDV 75
           +E+PDI VV+P++VP +D  RND EV +E  S + MV+  ++ I+DV    +VP+D S +
Sbjct: 49  HENPDIDVVDPIMVPSVDAGRNDNEVGEE--SINLMVDTLEVSIEDVEFFALVPMDCSLI 108

Query: 76  EDGVPHFPILP 86
           EDGVP   ILP
Sbjct: 109 EDGVPPLLILP 117

[Close]

BLAST of IVF0005310 vs. ExPASy TrEMBL
Match: A0A5A7TSR5 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00240 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 25/47 (53.19%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 14  GTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIK 61
           GTN++PD+GVV+ VVV DLD ++NDIEVSQE++ST+P +   +++ +
Sbjct: 428 GTNKNPDVGVVDLVVVSDLDANKNDIEVSQEEESTNPTITRRRVMFQ 474

[Close]

BLAST of IVF0005310 vs. NCBI nr
Match: KAA0048578.1 (hypothetical protein E6C27_scaffold61G002170 [Cucumis melo var. makuwa] >TYK27166.1 hypothetical protein E5676_scaffold236G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.51e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 14  GTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSD 73
           GTNEDPD+GV++ VV+ DLD  RNDIE  Q+++    MV+AS++ I+D  + VVP+D SD
Sbjct: 96  GTNEDPDVGVIDHVVILDLDAVRNDIEADQQEELVGAMVDASEVSIEDAWIFVVPMDYSD 155

Query: 74  VEDGVPHFPILPSQ 87
           VEDGVP FPIL S 
Sbjct: 156 VEDGVPPFPILSSN 169

[Close]

BLAST of IVF0005310 vs. NCBI nr
Match: KAA0036741.1 (hypothetical protein E6C27_scaffold20G00180 [Cucumis melo var. makuwa] >TYJ95808.1 hypothetical protein E5676_scaffold110G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.82e-18
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 14  GTNEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSD 73
           GTNEDP++GVVNPVVVP L+ ++NDIE  QE++S++P ++  ++LI       VPID S+
Sbjct: 98  GTNEDPNVGVVNPVVVPYLNANKNDIESGQEEESSNPTIDTLEVLI-------VPIDCSN 157

Query: 74  VEDGVPHFPILPSQ 87
           VEDG+P FPI+PS 
Sbjct: 158 VEDGMPPFPIIPSD 164

[Close]

BLAST of IVF0005310 vs. NCBI nr
Match: KAA0036828.1 (hypothetical protein E6C27_scaffold20G001290 [Cucumis melo var. makuwa] >TYJ95895.1 hypothetical protein E5676_scaffold110G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.40e-09
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 33 DVDRNDIEVSQEDKSTDPMVNASKILIKDVGVLVVPIDSSDVEDGVPHFPILP 85
          D +RNDI+  QE+   DP V+ASK+ I+D+ +LVVP+D SDV+DG+  FPILP
Sbjct: 45 DANRNDIQADQEEL-VDPTVDASKVPIEDIRILVVPMDCSDVQDGMSPFPILP 96

[Close]

BLAST of IVF0005310 vs. NCBI nr
Match: TYJ95941.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.14e-07
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 16  NEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVL-VVPIDSSDV 75
           +E+PDI VV+P++VP +D  RND EV +E  S + MV+  ++ I+DV    +VP+D S +
Sbjct: 49  HENPDIDVVDPIMVPSVDAGRNDNEVGEE--SINLMVDTLEVSIEDVEFFALVPMDCSLI 108

Query: 76  EDGVPHFPILP 85
           EDGVP   ILP
Sbjct: 109 EDGVPPLLILP 117

[Close]

BLAST of IVF0005310 vs. NCBI nr
Match: KAA0035141.1 (hypothetical protein E6C27_scaffold57G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.38e-07
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 16  NEDPDIGVVNPVVVPDLDVDRNDIEVSQEDKSTDPMVNASKILIKDVGVL-VVPIDSSDV 75
           +E+PDI VV+P++VP +D DRND E  +E  S + +V+  ++  +DV    +VP+D S +
Sbjct: 110 HENPDIDVVDPIMVPSVDADRNDNEAGEE--SINLVVDTLEVSSEDVEFFALVPMDCSSI 169

Query: 76  EDGVPHFPILP 85
           EDGVP   ILP
Sbjct: 170 EDGVPPLLILP 178

The following BLAST results are available for this feature:

BLAST of IVF0005310 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTY6	4.3e-14	58.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BBS2	1.0e-12	56.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BBP1	5.6e-06	56.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BBE8	4.7e-05	47.89	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00010 ...	[more]
A0A5A7TSR5	4.7e-05	53.19	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G...	[more]

BLAST of IVF0005310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048578.1	1.51e-18	58.11	hypothetical protein E6C27_scaffold61G002170 [Cucumis melo var. makuwa] >TYK2716...	[more]
KAA0036741.1	6.82e-18	55.41	hypothetical protein E6C27_scaffold20G00180 [Cucumis melo var. makuwa] >TYJ95808...	[more]
KAA0036828.1	3.40e-09	56.60	hypothetical protein E6C27_scaffold20G001290 [Cucumis melo var. makuwa] >TYJ9589...	[more]
TYJ95941.1	1.14e-07	47.89	F-box protein [Cucumis melo var. makuwa]	[more]
KAA0035141.1	1.38e-07	45.07	hypothetical protein E6C27_scaffold57G002260 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005310 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005310.1	IVF0005310.1	mRNA