IVF0005289 (gene) Melon (IVF77) v1

Overview
NameIVF0005289
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 28 isoform X2
Locationchr03: 2285616 .. 2286077 (-)
RNA-Seq ExpressionIVF0005289
SyntenyIVF0005289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCAAGACCTTGCAACCACCATACCCAGTTCTCAATCGTTGCCAGTATTCGCAGCCAATCGTGCCTAGAGCTTGCGACCTCCGACCCAGTTCTCAATCAGGCCCAGCCCTTGCCACCAATCGAGCCCAGACTTTACGACCACCGTACCCAGTTCCCAATCGTGCTCAATTCTCGCTACCAATCGTGCCCAAACCTTACGAACACCGTACCCAGTTCTCGCCGTCAACCGTGCAAAAACCTCGCGACCACCGTACCCAGTTCTCAATCCTGCCCAGCCTTCGCCACCAATTGTGCCCAGACCTCACGACCACCGTACCCAGTTCTCAATCGTGCCCAGTCCTCGCTGTCAATCATGCCCAGTCCTTGTCGCCACCCACGAATCTCCAACTTTGAAGATCATGAGCGGTATTATTCCTCTTCGACCAACGACGTTCAATGTGGTTTTCATCCCTTTTGA

mRNA sequence

ATGGTGCCAAGACCTTGCAACCACCATACCCAGTTCTCAATCGTTGCCAGTATTCGCAGCCAATCGTGCCTAGAGCTTGCGACCTCCGACCCAGTTCTCAATCAGGCCCAGCCCTTGCCACCAATCGAGCCCAGACTTTACGACCACCGTACCCAGTTCCCAATCGTGCTCAATTCTCGCTACCAATCGTGCCCAAACCTTACGAACACCGTACCCAGTTCTCGCCGTCAACCGTGCAAAAACCTCGCGACCACCGTACCCAGTTCTCAATCCTGCCCAGCCTTCGCCACCAATTGTGCCCAGACCTCACGACCACCGTACCCAGTTCTCAATCGTGCCCAGTCCTCGCTGTCAATCATGCCCAGTCCTTGTCGCCACCCACGAATCTCCAACTTTGAAGATCATGAGCGGTATTATTCCTCTTCGACCAACGACGTTCAATGTGGTTTTCATCCCTTTTGA

Coding sequence (CDS)

ATGGTGCCAAGACCTTGCAACCACCATACCCAGTTCTCAATCGTTGCCAGTATTCGCAGCCAATCGTGCCTAGAGCTTGCGACCTCCGACCCAGTTCTCAATCAGGCCCAGCCCTTGCCACCAATCGAGCCCAGACTTTACGACCACCGTACCCAGTTCCCAATCGTGCTCAATTCTCGCTACCAATCGTGCCCAAACCTTACGAACACCGTACCCAGTTCTCGCCGTCAACCGTGCAAAAACCTCGCGACCACCGTACCCAGTTCTCAATCCTGCCCAGCCTTCGCCACCAATTGTGCCCAGACCTCACGACCACCGTACCCAGTTCTCAATCGTGCCCAGTCCTCGCTGTCAATCATGCCCAGTCCTTGTCGCCACCCACGAATCTCCAACTTTGAAGATCATGAGCGGTATTATTCCTCTTCGACCAACGACGTTCAATGTGGTTTTCATCCCTTTTGA

Protein sequence

MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHERYYSSSTNDVQCGFHPF
Homology
BLAST of IVF0005289 vs. ExPASy TrEMBL
Match: A0A5D3DM22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001140 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR 60
           MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR
Sbjct: 1   MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR 60

Query: 61  YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM 120
           YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM
Sbjct: 61  YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM 120

Query: 121 PSPCRHPRISNFEDHER 138
           PSPCRHPRISNFEDHER
Sbjct: 121 PSPCRHPRISNFEDHER 137

BLAST of IVF0005289 vs. ExPASy TrEMBL
Match: A0A5A7TIN1 (DEAD-box ATP-dependent RNA helicase 28 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001580 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 75/138 (54.35%), Postives = 81/138 (58.70%), Query Frame = 0

Query: 21  QSCLELATS---------------------DPVLNQAQPLPPIEPRLYDHRTQFPIVLNS 80
           QSCLELAT+                      P+LN+AQ  PPI P+  DHRT+F      
Sbjct: 6   QSCLELATTVPSSQSGPALATNRAQTLQPLYPILNRAQFSPPIVPKPCDHRTEFS----- 65

Query: 81  RYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSI 138
                    + VP        NL TTVPSSQSCP FATNCAQTSRP YPVLNRAQSS  I
Sbjct: 66  --------PSIVP--------NLTTTVPSSQSCPTFATNCAQTSRPSYPVLNRAQSSPPI 122

BLAST of IVF0005289 vs. ExPASy TrEMBL
Match: A0A5A7SMD2 (Protein transport protein SEC31-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00380 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 49/105 (46.67%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 10  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTN 69
           TQF    S   QSC +LAT+ P    +    PI PR  DH TQF IV N   Q C +LT 
Sbjct: 13  TQFYRSNSPPHQSCQDLATTIPSSQSSPVFAPIVPRPRDHCTQFSIVPNPCRQLCLDLTT 72

Query: 70  TVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQTSRPPYP 109
           TVPSS+  P       +   TTVPSSQSCP  A N AQT     P
Sbjct: 73  TVPSSQSFPVLAANHAQTFGTTVPSSQSCPVLAANHAQTFETTVP 117

BLAST of IVF0005289 vs. ExPASy TrEMBL
Match: A0A5D3CEQ8 (DEAD-box ATP-dependent RNA helicase 28 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00560 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 49/136 (36.03%), Postives = 56/136 (41.18%), Query Frame = 0

Query: 2   VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRY 61
           +PRP +H TQFSIV S R QSC                    P L DHRTQF IV + R 
Sbjct: 1   MPRPHHHRTQFSIVPSPRRQSC--------------------PDLRDHRTQFSIVPSPRC 60

Query: 62  QSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIMP 121
           QSCP+L +                            +C Q                SI+P
Sbjct: 61  QSCPDLRD----------------------------HCTQ---------------FSIVP 73

Query: 122 SPCRHPRISNFEDHER 138
           SP RH RISN EDHER
Sbjct: 121 SPRRHLRISNSEDHER 73

BLAST of IVF0005289 vs. NCBI nr
Match: KAA0041464.1 (hypothetical protein E6C27_scaffold6G00410 [Cucumis melo var. makuwa] >TYK24339.1 hypothetical protein E5676_scaffold205G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (720), Expect = 9.14e-95
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR 60
           MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR
Sbjct: 1   MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSR 60

Query: 61  YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM 120
           YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM
Sbjct: 61  YQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIM 120

Query: 121 PSPCRHPRISNFEDHER 137
           PSPCRHPRISNFEDHER
Sbjct: 121 PSPCRHPRISNFEDHER 137

BLAST of IVF0005289 vs. NCBI nr
Match: KAA0041501.1 (DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa] >TYK24374.1 DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 9.84e-31
Identity = 76/138 (55.07%), Postives = 83/138 (60.14%), Query Frame = 0

Query: 21  QSCLELATSDP---------------------VLNQAQPLPPIEPRLYDHRTQFPIVLNS 80
           QSCLELAT+ P                     +LN+AQ  PPI P+  DHRT+F      
Sbjct: 6   QSCLELATTVPSSQSGPALATNRAQTLQPLYPILNRAQFSPPIVPKPCDHRTEF------ 65

Query: 81  RYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSI 137
                P++   VP        NL TTVPSSQSCP FATNCAQTSRP YPVLNRAQSS  I
Sbjct: 66  ----SPSI---VP--------NLTTTVPSSQSCPTFATNCAQTSRPSYPVLNRAQSSPPI 122

BLAST of IVF0005289 vs. NCBI nr
Match: KAA0025401.1 (protein transport protein SEC31-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.90e-11
Identity = 48/99 (48.48%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 10  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTN 69
           TQF    S   QSC +LAT+ P    +    PI PR  DH TQF IV N   Q C +LT 
Sbjct: 13  TQFYRSNSPPHQSCQDLATTIPSSQSSPVFAPIVPRPRDHCTQFSIVPNPCRQLCLDLTT 72

Query: 70  TVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQT 102
           TVPSS+  P       +   TTVPSSQSCP  A N AQT
Sbjct: 73  TVPSSQSFPVLAANHAQTFGTTVPSSQSCPVLAANHAQT 111

BLAST of IVF0005289 vs. NCBI nr
Match: TYK09772.1 (DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.02e-08
Identity = 49/136 (36.03%), Postives = 56/136 (41.18%), Query Frame = 0

Query: 2   VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRY 61
           +PRP +H TQFSIV S R QSC                    P L DHRTQF IV + R 
Sbjct: 1   MPRPHHHRTQFSIVPSPRRQSC--------------------PDLRDHRTQFSIVPSPRC 60

Query: 62  QSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVLNRAQSSLSIMP 121
           QSCP+L +                            +C Q                SI+P
Sbjct: 61  QSCPDLRD----------------------------HCTQ---------------FSIVP 73

Query: 122 SPCRHPRISNFEDHER 137
           SP RH RISN EDHER
Sbjct: 121 SPRRHLRISNSEDHER 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DM223.1e-73100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TIN11.2e-2454.35DEAD-box ATP-dependent RNA helicase 28 isoform X2 OS=Cucumis melo var. makuwa OX... [more]
A0A5A7SMD21.8e-0946.67Protein transport protein SEC31-like protein B OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3CEQ81.1e-0636.03DEAD-box ATP-dependent RNA helicase 28 isoform X2 OS=Cucumis melo var. makuwa OX... [more]
Match NameE-valueIdentityDescription
KAA0041464.19.14e-95100.00hypothetical protein E6C27_scaffold6G00410 [Cucumis melo var. makuwa] >TYK24339.... [more]
KAA0041501.19.84e-3155.07DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa] >TY... [more]
KAA0025401.11.90e-1148.48protein transport protein SEC31-like protein B [Cucumis melo var. makuwa][more]
TYK09772.12.02e-0836.03DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005289.1IVF0005289.1mRNA