IVF0005228 (gene) Melon (IVF77) v1

Overview


Name	IVF0005228
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ACT domain-containing protein
Location	chr08: 25286852 .. 25288449 (-)
RNA-Seq Expression	IVF0005228
Synteny	IVF0005228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAAAGAAAATAGAAAAATGCAAATATAAATAAAGAGAAAACTCGTGGTCTACTTTGTTTGAAGAAGCTTAGCAATAAGAGAAAGCAAGAACCTGCGGTGGCGCGTGAAGGAGACACACGGCGGAGTTTGCAATAATAATAAATTTCTCCTCCGGTGGTGGCCGTGAATAATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCATCCACAAGCTCTAGTGCTGTACTTTTCTCATCATTCTACTATATATTATCAATATTCTTCAATTTCTTTCTTTTATTTCTAGATTTTTCAACTCCTTTTTTCTCAAATTCGATTCCTCTGATACAAGTCGATCGAATCACTAGTTCCACTGGGTTTGTCTATTTGAAATAACGGTTTTTACTTCATCGATCTTTTTAATCACAATTATCGAAAGCAAGGTGATATATTCTAGCCATCATAGTTACTAATATATTGTACATCAAATGAAATCTTTAGCTACTTGGTCAATATTTATATTACTTTCATTCAATTGAAATTATGAGACGGAAAAAAAAAAAGATAAGAAAAACTTTTATATTAATTTCTCAAGTCTTTGTTGGGCAAAACTGACAAATTTTGACTAAACTCTCTTGGAAACATTAAAATAGAGAAGAGATTATATTATGTTTAACTTTTTTGAAGTAATTGAATTTAATTATTTACTAGAATCAATATAAGAAATAGAATTATTAATATGGAGAATATTAAGTATCTGAATTCAAATTGTAATAGTTGTTATTAATTGAAGCAATTTTGAACATGTGCACAGGTGGTGAATGTGGAGAGTGTAGAAAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAGAAATTAGGACTTGGAGTCCTCGATGCAGACATATCTTGTTCCGATTGTTTCCAACTCCAAGCTGTTGGAGAAGAGGTCTGATCTTTCTCCCTTACATTATTACATGTGAAAACTAACCAACATAAACAATAATATTCTCCTGTTAAAATGTTACATTCATCTTTTTTAATTGAAACTTCGATTCTTACCTTCATACCATCTGTACCTTAAAACAATCAAACCAAAATCTGATTAATATAAATCATGATTACCTATGTTTTAAATTTCTCATCTCTACACTTACAAAACAACGAACATTTGTTTTGATCTTATTTCTTTCCTTCAATCTTTTTTAAATATGAATAAAATTGAAAGTATATCGGAAATATTTTGGTGTATAATATTTAGTTTAGTTCAGTTTAGTTTTTCTGATTTACAGAATGAAGGGAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAACAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGGCATGAATTATATATATAAATATAGATATATATAATTACAATTATATTTATTTTCCTTTTTTACCAAACAGAATTACATCACTTCTGGTGTATAAGGTAACCAAAATTTTCAACTCTCTTTCAAGTGTAGAATTTGAAATATCTCCAACCAAAAAGAAA

mRNA sequence

AGAAAGAAAGAAAATAGAAAAATGCAAATATAAATAAAGAGAAAACTCGTGGTCTACTTTGTTTGAAGAAGCTTAGCAATAAGAGAAAGCAAGAACCTGCGGTGGCGCGTGAAGGAGACACACGGCGGAGTTTGCAATAATAATAAATTTCTCCTCCGGTGGTGGCCGTGAATAATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCATCCACAAGCTCTAGTGCTGTGGTGAATGTGGAGAGTGTAGAAAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAGAAATTAGGACTTGGAGTCCTCGATGCAGACATATCTTGTTCCGATTGTTTCCAACTCCAAGCTGTTGGAGAAGAGAATGAAGGGAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAACAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGGCATGAATTATATATATAAATATAGATATATATAATTACAATTATATTTATTTTCCTTTTTTACCAAACAGAATTACATCACTTCTGGTGTATAAGGTAACCAAAATTTTCAACTCTCTTTCAAGTGTAGAATTTGAAATATCTCCAACCAAAAAGAAA

Coding sequence (CDS)

ATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCATCCACAAGCTCTAGTGCTGTGGTGAATGTGGAGAGTGTAGAAAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAGAAATTAGGACTTGGAGTCCTCGATGCAGACATATCTTGTTCCGATTGTTTCCAACTCCAAGCTGTTGGAGAAGAGAATGAAGGGAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAACAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGGCATGA

Protein sequence

MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILEAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA

Homology

[Close]

BLAST of IVF0005228 vs. ExPASy TrEMBL
Match: A0A1S3CLI8 (uncharacterized protein LOC103502184 OS=Cucumis melo OX=3656 GN=LOC103502184 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.7e-53
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MGSRERKK-AAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKK AAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 119
           EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 119

[Close]

BLAST of IVF0005228 vs. ExPASy TrEMBL
Match: A0A0A0L039 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329560 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.8e-52
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MGSRERKKAAAA--NSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRI 60
           MGSRERKKAAAA  NSSHHNSKEFRASTSS+AVVNVESVERGFLINVFLERNSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 61  LEAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118
           LEAFEKLGLGVLDADISCSDCFQLQA GEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 119

[Close]

BLAST of IVF0005228 vs. ExPASy TrEMBL
Match: A0A6J1IM47 (uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.5e-48
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAA++ +HH SKEFRASTSSSAVVNVE +ERGFLINVF ERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 119
           AFEKLGL VLDAD+SCSDCFQLQAVGEENEG KIIKAQVVKNAVKQAIKEWSES+GQA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of IVF0005228 vs. ExPASy TrEMBL
Match: A0A6J1GFJ5 (uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC111453491 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.7e-48
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAA++ +HH SKEFRASTSSSAVVNVE++ERGFLINVF ERNSPGLLV+ILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 119
           AFEKLGL VLDAD+SCSDCFQLQAVGEENEG KIIKAQVVKNAVKQAIKEWSES+GQA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of IVF0005228 vs. ExPASy TrEMBL
Match: A0A6J1CQF9 (uncharacterized protein LOC111013797 OS=Momordica charantia OX=3673 GN=LOC111013797 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKK AAA+S +H SKEFRASTSSSA VNVESVERGF+INV+LERNSPGLLVRILE
Sbjct: 1   MGSRERKK-AAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESD--GQA 119
            FEKLGL VLDA +SCSD FQLQAVGEENEG KIIK QVVK AVKQAIKEWSES+  GQA
Sbjct: 61  VFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESESNGQA 119

[Close]

BLAST of IVF0005228 vs. NCBI nr
Match: XP_008464258.1 (PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo])

HSP 1 Score: 215 bits (548), Expect = 4.40e-70
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MGSRERKKAAAA-NSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAAA NSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 118
           EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 119

[Close]

BLAST of IVF0005228 vs. NCBI nr
Match: XP_004149926.1 (uncharacterized protein LOC101209807 [Cucumis sativus] >KGN54434.1 hypothetical protein Csa_012709 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 4.37e-68
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MGSRERKKAAAA--NSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRI 60
           MGSRERKKAAAA  NSSHHNSKEFRASTSS+AVVNVESVERGFLINVFLERNSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 61  LEAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 117
           LEAFEKLGLGVLDADISCSDCFQLQA GEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 119

[Close]

BLAST of IVF0005228 vs. NCBI nr
Match: XP_022977370.1 (uncharacterized protein LOC111477723 [Cucurbita maxima])

HSP 1 Score: 198 bits (504), Expect = 2.18e-63
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAA++ +HH SKEFRASTSSSAVVNVE +ERGFLINVF ERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 118
           AFEKLGL VLDAD+SCSDCFQLQAVGEENEG KIIKAQVVKNAVKQAIKEWSES+GQA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of IVF0005228 vs. NCBI nr
Match: XP_038882922.1 (uncharacterized protein LOC120074022 [Benincasa hispida])

HSP 1 Score: 197 bits (502), Expect = 4.13e-63
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAA  SSHH SKEFRASTSSSA+VNVES+ERGFLINVFLERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAA--SSHHKSKEFRASTSSSAMVNVESLERGFLINVFLERNSPGLLVRILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 118
           AFEKLGL VLDA++SCSDCFQLQAVGEENEG KIIKAQVVKNAVKQAIKEWSES+GQA
Sbjct: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 116

[Close]

BLAST of IVF0005228 vs. NCBI nr
Match: XP_022950375.1 (uncharacterized protein LOC111453491 [Cucurbita moschata])

HSP 1 Score: 197 bits (501), Expect = 6.26e-63
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MGSRERKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAA++ +HH SKEFRASTSSSAVVNVE++ERGFLINVF ERNSPGLLV+ILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQILE 60

Query: 61  AFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQA 118
           AFEKLGL VLDAD+SCSDCFQLQAVGEENEG KIIKAQVVKNAVKQAIKEWSES+GQA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of IVF0005228 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-19
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 31  VVNVESVERGFLINVFLERNSPGLLVRILEAFEKLGLGVLDADISCSDCFQLQAVGEENE 90
           +V VE++++GF+INVF  +N PG+LV +LEAFE +GL VL+A  SC+D F L A+G ENE
Sbjct: 70  MVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMGLENE 129

Query: 91  GRKIIKAQVVKNAVKQAIKEWSE 114
             + + A+ VK AV  AI+ W E
Sbjct: 130 DGENMDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of IVF0005228 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-17
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 6   RKKAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRILEAFEKL 65
           ++K    N++  + + FR S+  + +V VE++E+GF+I V   +N  G+LV +LE FE L
Sbjct: 45  KQKVEKINNATTSEQSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDL 104

Query: 66  GLGVLDADISCSDCFQLQAVG-EENEGRKIIKAQVVKNAVKQAIKEWSES 115
           GL V++A +SC+D F L A+G   N+    I A+ VK AV +AI+ WS+S
Sbjct: 105 GLDVVEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

The following BLAST results are available for this feature:

BLAST of IVF0005228 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLI8	2.7e-53	99.16	uncharacterized protein LOC103502184 OS=Cucumis melo OX=3656 GN=LOC103502184 PE=...	[more]
A0A0A0L039	8.8e-52	96.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329560 PE=4 SV=1	[more]
A0A6J1IM47	3.5e-48	89.83	uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723...	[more]
A0A6J1GFJ5	7.7e-48	88.98	uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC1114534...	[more]
A0A6J1CQF9	1.8e-41	84.17	uncharacterized protein LOC111013797 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of IVF0005228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464258.1	4.40e-70	99.16	PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo]	[more]
XP_004149926.1	4.37e-68	96.64	uncharacterized protein LOC101209807 [Cucumis sativus] >KGN54434.1 hypothetical ...	[more]
XP_022977370.1	2.18e-63	89.83	uncharacterized protein LOC111477723 [Cucurbita maxima]	[more]
XP_038882922.1	4.13e-63	91.53	uncharacterized protein LOC120074022 [Benincasa hispida]	[more]
XP_022950375.1	6.26e-63	88.98	uncharacterized protein LOC111453491 [Cucurbita moschata]	[more]

BLAST of IVF0005228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	7.4e-19	51.81	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	4.1e-17	40.91	transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR31945:SF45	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	coord: 30..114
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 30..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005228.3	IVF0005228.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding