IVF0005224 (gene) Melon (IVF77) v1

Overview


Name	IVF0005224
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein TIC 214
Location	tig00000662: 43967 .. 44182 (-)
RNA-Seq Expression	IVF0005224
Synteny	IVF0005224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Protein sequence

MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHIDLLCASASSIG

Homology

[Close]

BLAST of IVF0005224 vs. ExPASy TrEMBL
Match: A0A2Z7CD92 (Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71

[Close]

BLAST of IVF0005224 vs. ExPASy TrEMBL
Match: A0A650F2E1 (Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDN FGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNN FYYGTAHDVHI
Sbjct: 14 MHEDNYFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNWFYYGTAHDVHI 73

Query: 61 DLLCASASSIG 72
          DLLCA ASSIG
Sbjct: 74 DLLCAFASSIG 84

[Close]

BLAST of IVF0005224 vs. ExPASy TrEMBL
Match: A0A200QRC7 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-31
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE  ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71

[Close]

BLAST of IVF0005224 vs. ExPASy TrEMBL
Match: A0A410PAD6 (Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREE ISNN FY GTAHD
Sbjct: 8  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREEGISNNWFYCGTAHD 67

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASASSIG
Sbjct: 68 VHIDLLCASASSIG 81

[Close]

BLAST of IVF0005224 vs. ExPASy TrEMBL
Match: A0A650GBS0 (Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREESISNN FY GTAHD
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74

[Close]

BLAST of IVF0005224 vs. NCBI nr
Match: KZV45020.1 (membrane protein ycf1 [Dorcoceras hygrometricum])

HSP 1 Score: 146 bits (369), Expect = 2.92e-44
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 71
          DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71

[Close]

BLAST of IVF0005224 vs. NCBI nr
Match: OVA13011.1 (hypothetical protein BVC80_8945g12 [Macleaya cordata])

HSP 1 Score: 143 bits (361), Expect = 4.85e-43
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE  ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 71
          DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71

[Close]

BLAST of IVF0005224 vs. NCBI nr
Match: QGW48450.1 (hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphanus sativus])

HSP 1 Score: 138 bits (348), Expect = 5.10e-41
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR---NREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR   NREESISNN FY GTAHD
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60

Query: 61 VHIDLLCASASSIG 71
          VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74

[Close]

BLAST of IVF0005224 vs. NCBI nr
Match: PLY71591.1 (hypothetical protein LSAT_1X88141 [Lactuca sativa] >PLY71825.1 hypothetical protein LSAT_3X45940 [Lactuca sativa] >PLY92833.1 hypothetical protein LSAT_5X181940 [Lactuca sativa] >PLY94842.1 hypothetical protein LSAT_2X97160 [Lactuca sativa] >PLY96461.1 hypothetical protein LSAT_5X47101 [Lactuca sativa])

HSP 1 Score: 135 bits (341), Expect = 5.97e-40
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR---NREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSS YGRR   NREE ISNN FYYGTAH+
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSHYGRRRRRNREEGISNNWFYYGTAHN 60

Query: 61 VHIDLLCASASSIG 71
          VHIDLLCASASS G
Sbjct: 61 VHIDLLCASASSTG 74

[Close]

BLAST of IVF0005224 vs. NCBI nr
Match: PKU73252.1 (hypothetical protein MA16_Dca017358 [Dendrobium catenatum])

HSP 1 Score: 135 bits (340), Expect = 7.79e-40
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDN+FGRCGR LLWISDHILHRALLSLPSPSSGYGRRNRE  ISNN FY GTAHDVHI
Sbjct: 1  MHEDNKFGRCGRALLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYCGTAHDVHI 60

Query: 61 DLLCASASSIG 71
          +LLCASAS+IG
Sbjct: 61 NLLCASASNIG 71

The following BLAST results are available for this feature:

BLAST of IVF0005224 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z7CD92	2.7e-32	95.77	Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 S...	[more]
A0A650F2E1	8.0e-32	95.77	Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1	[more]
A0A200QRC7	2.3e-31	94.37	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1	[more]
A0A410PAD6	4.4e-30	91.89	Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1	[more]
A0A650GBS0	7.4e-30	91.89	Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1	[more]

BLAST of IVF0005224 vs. NCBI nr


Match Name	E-value	Identity	Description
KZV45020.1	2.92e-44	95.77	membrane protein ycf1 [Dorcoceras hygrometricum]	[more]
OVA13011.1	4.85e-43	94.37	hypothetical protein BVC80_8945g12 [Macleaya cordata]	[more]
QGW48450.1	5.10e-41	91.89	hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphan...	[more]
PLY71591.1	5.97e-40	89.19	hypothetical protein LSAT_1X88141 [Lactuca sativa] >PLY71825.1 hypothetical prot...	[more]
PKU73252.1	7.79e-40	88.73	hypothetical protein MA16_Dca017358 [Dendrobium catenatum]	[more]

BLAST of IVF0005224 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005224.1	IVF0005224.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion