IVF0005190 (gene) Melon (IVF77) v1

Overview


Name	IVF0005190
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr09: 6390992 .. 6391777 (-)
RNA-Seq Expression	IVF0005190
Synteny	IVF0005190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTACCTTAGCAGGCTGCTTGATTCTTTGGGCGATAAAATTAAAGGAGTCAGGATGAACAACAATCTCAACCTCACTCACCTCCTTTTTGCAGATGACATCCTTCTCTTTCCAGAAGACAATGAAGACTCCCTCAACAACCTCAAATACGTCATTCAACTCTTTCAACTGGCTTTGGGCCTAAATGTAAATTTAAATAAATCTACCATCTCGTCCATAAATGTTGATGTTGCCAGAACAAACCAAGTTGCTTCGTCTTGGGGTGTTTCGACACAATTTTTTCCCACTAGCTACCTGGGAGTGCCTCTCGATGGAAAGCCCATCTCAAAATGCTTCTGGGATAATATTAAAGAAAAAGTCAGCAAAAAACTATCCAACTGGAAGTACTCGTTGCTCTCCAAAGGTGAAAAAATTACTCTAATAAATTCCACTCTTTCTAGCCTTCCTACATACCAGCTTTCGGTTTTCAAAGCTTCTGCTTCCATTTACAAAAGTATTGAAAAAACCTGGAGAAACTTCCTCTGGAATAGTTCAAACGAAACCCAAAAGTTGCACCTGGTTAGATGGTCAATGGTCACCTCTCCAAAATTGAAAGGGGGCCTTGGTATCAATCGCATTAAAGATACCAACTTCGCGCTCTTAAATAAATGGTTATGGAGATTCATTCATGAAGATTACCCTCTTTGGAAGAGATTTATAGCAGTCAAATATGAGAGCTCAGTTCAGGGAGATATTCCATACAAAAGCATTACAGTAGCAGCAGATCCCCTTGGCACTCTATGA

mRNA sequence

ATGGACTACCTTAGCAGGCTGCTTGATTCTTTGGGCGATAAAATTAAAGGAGTCAGGATGAACAACAATCTCAACCTCACTCACCTCCTTTTTGCAGATGACATCCTTCTCTTTCCAGAAGACAATGAAGACTCCCTCAACAACCTCAAATACGTCATTCAACTCTTTCAACTGGCTTTGGGCCTAAATGTAAATTTAAATAAATCTACCATCTCGTCCATAAATGTTGATGTTGCCAGAACAAACCAAGTTGCTTCGTCTTGGGGTGTTTCGACACAATTTTTTCCCACTAGCTACCTGGGAGTGCCTCTCGATGGAAAGCCCATCTCAAAATGCTTCTGGGATAATATTAAAGAAAAAGTCAGCAAAAAACTATCCAACTGGAAGTACTCGTTGCTCTCCAAAGGTGAAAAAATTACTCTAATAAATTCCACTCTTTCTAGCCTTCCTACATACCAGCTTTCGGTTTTCAAAGCTTCTGCTTCCATTTACAAAAGTATTGAAAAAACCTGGAGAAACTTCCTCTGGAATAGTTCAAACGAAACCCAAAAGTTGCACCTGGTTAGATGGTCAATGGTCACCTCTCCAAAATTGAAAGGGGGCCTTGGTATCAATCGCATTAAAGATACCAACTTCGCGCTCTTAAATAAATGGTTATGGAGATTCATTCATGAAGATTACCCTCTTTGGAAGAGATTTATAGCAGTCAAATATGAGAGCTCAGTTCAGGGAGATATTCCATACAAAAGCATTACAGTAGCAGCAGATCCCCTTGGCACTCTATGA

Coding sequence (CDS)

ATGGACTACCTTAGCAGGCTGCTTGATTCTTTGGGCGATAAAATTAAAGGAGTCAGGATGAACAACAATCTCAACCTCACTCACCTCCTTTTTGCAGATGACATCCTTCTCTTTCCAGAAGACAATGAAGACTCCCTCAACAACCTCAAATACGTCATTCAACTCTTTCAACTGGCTTTGGGCCTAAATGTAAATTTAAATAAATCTACCATCTCGTCCATAAATGTTGATGTTGCCAGAACAAACCAAGTTGCTTCGTCTTGGGGTGTTTCGACACAATTTTTTCCCACTAGCTACCTGGGAGTGCCTCTCGATGGAAAGCCCATCTCAAAATGCTTCTGGGATAATATTAAAGAAAAAGTCAGCAAAAAACTATCCAACTGGAAGTACTCGTTGCTCTCCAAAGGTGAAAAAATTACTCTAATAAATTCCACTCTTTCTAGCCTTCCTACATACCAGCTTTCGGTTTTCAAAGCTTCTGCTTCCATTTACAAAAGTATTGAAAAAACCTGGAGAAACTTCCTCTGGAATAGTTCAAACGAAACCCAAAAGTTGCACCTGGTTAGATGGTCAATGGTCACCTCTCCAAAATTGAAAGGGGGCCTTGGTATCAATCGCATTAAAGATACCAACTTCGCGCTCTTAAATAAATGGTTATGGAGATTCATTCATGAAGATTACCCTCTTTGGAAGAGATTTATAGCAGTCAAATATGAGAGCTCAGTTCAGGGAGATATTCCATACAAAAGCATTACAGTAGCAGCAGATCCCCTTGGCACTCTATGA

Protein sequence

MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALGLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKVSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYESSVQGDIPYKSITVAADPLGTL

Homology

[Close]

BLAST of IVF0005190 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 0


Query: 102 VPLDGKPISKCFWDNIKEKVSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASA 161
           +P+  K I+K  +  I E+VS ++S W+   LS   ++TL  + LSS+P + +S      
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 162 SIYKSIEKTWRNFLWNSSNETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWR 221
           SI   +++  R FLW S+ E +K HLV+WS V SPK +GGLG+   K  N AL++K  WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 222 FIHEDYPLWKRFIAVKY 239
            + E   LW   +  KY
Sbjct: 121 LLQEKNSLWTLVLQKKY 137

[Close]

BLAST of IVF0005190 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 51/224 (22.77%), Postives = 102/224 (45.54%), Query Frame = 0


Query: 15  IKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALGLNVNLNKSTISSI 74
           IKG+ + +   +   LFADD++++ E+  DS   L  VI+ +    G  +N +KS     
Sbjct: 684 IKGIHIGSE-EIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIY 743

Query: 75  NVDVARTNQVASSWGVSTQFFPTSYLGVPL--DGKPISKCFWDNIKEKVSKKLSNWKYSL 134
             +      V  S   +       YLGV L  D K + K  ++ +++++++ ++ WK   
Sbjct: 744 TNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIP 803

Query: 135 LSKGEKITLINSTLSSLPTYQLSV--FKASASIYKSIEKTWRNFLWNSSNETQKLHLVRW 194
            S   +I ++  ++     Y  +    KA  S +K +EK   +F+WN     QK   +  
Sbjct: 804 CSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWN-----QKKPQIAK 863

Query: 195 SMVTSPKLKGGLGIN--RIKDTNFALLNKWLWRFIHEDYPLWKR 233
           +++++    GG+ +   R+   +  +   W W   + +  +W R
Sbjct: 864 TLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWH-KNREVDVWNR 900

[Close]

BLAST of IVF0005190 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 52/225 (23.11%), Postives = 97/225 (43.11%), Query Frame = 0


Query: 14  KIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALGLNVNLNKSTISS 73
           +IKG+++     +   LFADD++++ E+   S  NL  +I  F    G  +N+ KS    
Sbjct: 684 EIKGIQLGKE-EVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFL 743

Query: 74  INVDVARTNQVASSWGVSTQFFPTSYLGVPL--DGKPISKCFWDNIKEKVSKKLSNWKYS 133
            N +    +Q+      +       YLG+ L  D K + K  +  + +++ +  + WK  
Sbjct: 744 YNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNI 803

Query: 134 LLSKGEKITLINSTLSSLPTYQLSV--FKASASIYKSIEKTWRNFLWNSSNETQKLHLVR 193
             S   +I ++   +     Y+ +    K   + +  +EKT   F+WN     QK   + 
Sbjct: 804 PCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWN-----QKRARIA 863

Query: 194 WSMVTSPKLKGGLGINRIKDTNFALLNK--WLWRFIHEDYPLWKR 233
            S+++     GG+ +   K    A + K  W W + + D   W R
Sbjct: 864 KSILSQKNKAGGITLPDFKLYYKATVTKTAWYW-YQNRDIDQWNR 901

[Close]

BLAST of IVF0005190 vs. ExPASy TrEMBL
Match: A0A5D3C384 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002530 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.6e-136
Identity = 245/250 (98.00%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           M ++  LLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL
Sbjct: 112 MAFIKGLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 171

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK
Sbjct: 172 GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 231

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN
Sbjct: 232 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 291

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES
Sbjct: 292 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 351

Query: 241 SVQGDIPYKS 251
           SVQGDIPYKS
Sbjct: 352 SVQGDIPYKS 361

[Close]

BLAST of IVF0005190 vs. ExPASy TrEMBL
Match: A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 8.9e-97
Identity = 171/247 (69.23%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV+M  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 319 MDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 378

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD ART Q+AS WG+ST+F P +YLGVPL GK  +K FW N++EK
Sbjct: 379 GLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEK 438

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 439 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPP 498

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TSPK +GGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 499 ETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 558

Query: 241 SVQGDIP 248
             +GDIP
Sbjct: 559 LSKGDIP 565

[Close]

BLAST of IVF0005190 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.4e-96
Identity = 170/247 (68.83%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 495 MDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 554

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK I+K FW N++EK
Sbjct: 555 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEK 614

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 615 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPP 674

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 675 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 734

Query: 241 SVQGDIP 248
             +GDIP
Sbjct: 735 LSKGDIP 741

[Close]

BLAST of IVF0005190 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.3e-95
Identity = 169/247 (68.42%), Postives = 206/247 (83.40%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 558 MDYISRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 617

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK  +K FW N++EK
Sbjct: 618 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEK 677

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 678 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPP 737

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 738 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 797

Query: 241 SVQGDIP 248
             +GDIP
Sbjct: 798 LSKGDIP 804

[Close]

BLAST of IVF0005190 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.3e-95
Identity = 169/247 (68.42%), Postives = 206/247 (83.40%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 495 MDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 554

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK I+K FW N++EK
Sbjct: 555 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEK 614

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FK   S  K+IEKTWRNFLW +  
Sbjct: 615 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPP 674

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 675 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 734

Query: 241 SVQGDIP 248
             +GDIP
Sbjct: 735 LSKGDIP 741

[Close]

BLAST of IVF0005190 vs. NCBI nr
Match: TYK05764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 493 bits (1268), Expect = 4.10e-172
Identity = 245/250 (98.00%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           M ++  LLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL
Sbjct: 112 MAFIKGLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 171

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK
Sbjct: 172 GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 231

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN
Sbjct: 232 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 291

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES
Sbjct: 292 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 351

Query: 241 SVQGDIPYKS 250
           SVQGDIPYKS
Sbjct: 352 SVQGDIPYKS 361

[Close]

BLAST of IVF0005190 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 361 bits (927), Expect = 8.45e-117
Identity = 171/247 (69.23%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV+M  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 319 MDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 378

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD ART Q+AS WG+ST+F P +YLGVPL GK  +K FW N++EK
Sbjct: 379 GLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEK 438

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 439 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPP 498

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TSPK +GGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 499 ETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 558

Query: 241 SVQGDIP 247
             +GDIP
Sbjct: 559 LSKGDIP 565

[Close]

BLAST of IVF0005190 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 359 bits (921), Expect = 5.27e-113
Identity = 170/247 (68.83%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 495 MDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 554

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK I+K FW N++EK
Sbjct: 555 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEK 614

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 615 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPP 674

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 675 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 734

Query: 241 SVQGDIP 247
             +GDIP
Sbjct: 735 LSKGDIP 741

[Close]

BLAST of IVF0005190 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 357 bits (917), Expect = 2.03e-112
Identity = 169/247 (68.42%), Postives = 206/247 (83.40%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 495 MDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 554

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK I+K FW N++EK
Sbjct: 555 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEK 614

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FK   S  K+IEKTWRNFLW +  
Sbjct: 615 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPP 674

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 675 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 734

Query: 241 SVQGDIP 247
             +GDIP
Sbjct: 735 LSKGDIP 741

[Close]

BLAST of IVF0005190 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 357 bits (917), Expect = 5.89e-112
Identity = 169/247 (68.42%), Postives = 206/247 (83.40%), Query Frame = 0


Query: 1   MDYLSRLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLAL 60
           MDY+SRLL+S+G+KIKGV++  N+NLTHLLFADDILLF ED+E S+ NLK +I LFQLA 
Sbjct: 558 MDYISRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLAS 617

Query: 61  GLNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEK 120
           GL++NLNKSTIS INVD +RT Q+AS WG+ST+F P +YLGVPL GK  +K FW N++EK
Sbjct: 618 GLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEK 677

Query: 121 VSKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSN 180
           ++KKL++WKYS+LSKG KITLI S+L+SLPTYQLS+FKA  S  K+IEKTWRNFLW +  
Sbjct: 678 INKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPP 737

Query: 181 ETQKLHLVRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYES 240
           ET KLHLV W+ +TS K KGGLGI+R+KDTNFALL KWLWR+IHED PLWK+ I  KY S
Sbjct: 738 ETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRS 797

Query: 241 SVQGDIP 247
             +GDIP
Sbjct: 798 LSKGDIP 804

[Close]

BLAST of IVF0005190 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 84  VASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKVSKKLSNWKYSLLSKGEKITLIN 143
           +  S+  ++   P  YLG+PL  K ++   +  + EK+  ++  W    LS   ++ LI+
Sbjct: 12  ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 71

Query: 144 STLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNETQKLHLVRWSMVTSPKLKGGLG 203
           S + SL  + +S F+  ++  K I+    +FLW+      K   V WS V +PK +GGLG
Sbjct: 72  SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 131

Query: 204 INRIKDTN---------FALLNKWLWRFIHEDYPLWKRFI 235
           I  +K+ N            L  W+W+ I +   L   F+
Sbjct: 132 IRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFV 171

The following BLAST results are available for this feature:

BLAST of IVF0005190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	4.5e-21	38.69	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P08548	1.3e-07	22.77	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
O00370	1.8e-06	23.11	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]

BLAST of IVF0005190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C384	2.6e-136	98.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TI93	8.9e-97	69.23	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	4.4e-96	68.83	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	1.3e-95	68.42	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E2K5	1.3e-95	68.42	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]

BLAST of IVF0005190 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05764.1	4.10e-172	98.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041367.1	8.45e-117	69.23	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039770.1	5.27e-113	68.83	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]
XP_016902461.1	2.03e-112	68.42	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
TYK06777.1	5.89e-112	68.42	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	7.1e-14	28.13	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 15..240
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 15..240
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 8.83462

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005190.1	IVF0005190.1	mRNA