IVF0005075 (gene) Melon (IVF77) v1

Overview


Name	IVF0005075
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr10: 9162442 .. 9162654 (-)
RNA-Seq Expression	IVF0005075
Synteny	IVF0005075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAGAAGAAACCATTGCAGAATTCAATGTTCGTGTCCTGAACTTGGCTAATGAATCATTTGCACTTGGAGAAATGATCTCTGACTCTAAGATGGTCCAGAAAGTGTTAAGATCTCTTCCTGCTAGATTTAATATGAAGGTAACGACCATCGAGGAAGAAAATGACATTACCACCATGAAGTTAGATGACTTGTTCGGTTCTCTTTGA

mRNA sequence

ATGGCTAAAGAAGAAACCATTGCAGAATTCAATGTTCGTGTCCTGAACTTGGCTAATGAATCATTTGCACTTGGAGAAATGATCTCTGACTCTAAGATGGTCCAGAAAGTGTTAAGATCTCTTCCTGCTAGATTTAATATGAAGGTAACGACCATCGAGGAAGAAAATGACATTACCACCATGAAGTTAGATGACTTGTTCGGTTCTCTTTGA

Coding sequence (CDS)

ATGGCTAAAGAAGAAACCATTGCAGAATTCAATGTTCGTGTCCTGAACTTGGCTAATGAATCATTTGCACTTGGAGAAATGATCTCTGACTCTAAGATGGTCCAGAAAGTGTTAAGATCTCTTCCTGCTAGATTTAATATGAAGGTAACGACCATCGAGGAAGAAAATGACATTACCACCATGAAGTTAGATGACTTGTTCGGTTCTCTTTGA

Protein sequence

MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITTMKLDDLFGSL

Homology

[Close]

BLAST of IVF0005075 vs. ExPASy TrEMBL
Match: A0A5A7U4G8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001030 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
           M  +ETIA+FNVRVL+LANESF LGE I+ SKMVQKVLRSLP+RF+MK+T IEE NDITT
Sbjct: 153 MNDDETIAKFNVRVLDLANESFTLGEKIAKSKMVQKVLRSLPSRFSMKMTAIEEANDITT 212

Query: 61  MKLDDLFGSL 71
           MKLD+LFGSL
Sbjct: 213 MKLDELFGSL 222

[Close]

BLAST of IVF0005075 vs. ExPASy TrEMBL
Match: A0A5D3BW07 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001070 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
           MA++ETI EFNVRVL+LANESFALGE  +D+KMV++VLRSL  RFNMK TTI+E NDITT
Sbjct: 99  MAEDETIVEFNVRVLDLANESFALGEKFTDTKMVREVLRSLRFRFNMKATTIKEANDITT 158

Query: 61  MKLDDLFGSL 71
           MKLD+LFGSL
Sbjct: 159 MKLDELFGSL 168

[Close]

BLAST of IVF0005075 vs. ExPASy TrEMBL
Match: A0A5A7UQY8 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002090 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M  EETIA+FNVRV++ A ESFALGE IS +KMVQKVLRSLP RFNMKVT I+E ND+T+
Sbjct: 1  MTGEETIAKFNVRVVDFAKESFALGEKISKAKMVQKVLRSLPVRFNMKVTAIKEANDVTS 60

Query: 61 MKLDDLFGSL 71
          MKLD+LFGSL
Sbjct: 61 MKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. ExPASy TrEMBL
Match: A0A5A7UA40 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00370 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M KEE IAE+NVRVL +ANESF LGE I +SK+V+KVLRSLP++F+MKVTTIEE +DITT
Sbjct: 1  MTKEEMIAEYNVRVLEIANESFNLGEKIYESKLVRKVLRSLPSKFDMKVTTIEEAHDITT 60

Query: 61 MKLDDLFGSL 71
          +KLD+LFGSL
Sbjct: 61 LKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. ExPASy TrEMBL
Match: A0A5D3CGS2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00380 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M KEETIA+FNVRVL++A ES ALGE +SDSK+V+KV RSLP++FNMKVTTIEE ND++ 
Sbjct: 1  MTKEETIAKFNVRVLDIAKESDALGEKMSDSKLVRKVRRSLPSKFNMKVTTIEEANDLSK 60

Query: 61 MKLDDLFGSL 71
          MKLD+LFGSL
Sbjct: 61 MKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. NCBI nr
Match: KAA0056045.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 6.27e-28
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M  EETIA+FNVRV++ A ESFALGE IS +KMVQKVLRSLP RFNMKVT I+E ND+T+
Sbjct: 1  MTGEETIAKFNVRVVDFAKESFALGEKISKAKMVQKVLRSLPVRFNMKVTAIKEANDVTS 60

Query: 61 MKLDDLFGSL 70
          MKLD+LFGSL
Sbjct: 61 MKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. NCBI nr
Match: KAA0052224.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 6.92e-28
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M KEE IAE+NVRVL +ANESF LGE I +SK+V+KVLRSLP++F+MKVTTIEE +DITT
Sbjct: 1  MTKEEMIAEYNVRVLEIANESFNLGEKIYESKLVRKVLRSLPSKFDMKVTTIEEAHDITT 60

Query: 61 MKLDDLFGSL 70
          +KLD+LFGSL
Sbjct: 61 LKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. NCBI nr
Match: KAA0050148.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 8.16e-28
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
           M  +ETIA+FNVRVL+LANESF LGE I+ SKMVQKVLRSLP+RF+MK+T IEE NDITT
Sbjct: 153 MNDDETIAKFNVRVLDLANESFTLGEKIAKSKMVQKVLRSLPSRFSMKMTAIEEANDITT 212

Query: 61  MKLDDLFGSL 70
           MKLD+LFGSL
Sbjct: 213 MKLDELFGSL 222

[Close]

BLAST of IVF0005075 vs. NCBI nr
Match: TYK27731.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 3.61e-27
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
          M  EETIA+FNVRVL+ A ESFALGE IS +KMVQKVLRSL  RFNMKVT I+E ND+T+
Sbjct: 1  MTGEETIAKFNVRVLDFAKESFALGEKISKAKMVQKVLRSLSVRFNMKVTAIKEANDVTS 60

Query: 61 MKLDDLFGSL 70
          MKLD+LFGSL
Sbjct: 61 MKLDELFGSL 70

[Close]

BLAST of IVF0005075 vs. NCBI nr
Match: KAA0046866.1 (Receptor-like protein 12 [Cucumis melo var. makuwa] >TYK03280.1 Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 4.93e-27
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAKEETIAEFNVRVLNLANESFALGEMISDSKMVQKVLRSLPARFNMKVTTIEEENDITT 60
           MA++ETI EFNVRVL+LANESFALGE  +D+KMV++VLRSL  RFNMK TTI+E NDITT
Sbjct: 99  MAEDETIVEFNVRVLDLANESFALGEKFTDTKMVREVLRSLRFRFNMKATTIKEANDITT 158

Query: 61  MKLDDLFGSL 70
           MKLD+LFGSL
Sbjct: 159 MKLDELFGSL 168

The following BLAST results are available for this feature:

BLAST of IVF0005075 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005075 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4G8	1.8e-20	78.57	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BW07	4.0e-20	77.14	Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UQY8	1.2e-19	75.71	Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7UA40	2.0e-19	74.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G...	[more]
A0A5D3CGS2	2.6e-19	74.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G...	[more]

BLAST of IVF0005075 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056045.1	6.27e-28	75.71	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]
KAA0052224.1	6.92e-28	74.29	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050148.1	8.16e-28	78.57	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase...	[more]
TYK27731.1	3.61e-27	75.71	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]
KAA0046866.1	4.93e-27	77.14	Receptor-like protein 12 [Cucumis melo var. makuwa] >TYK03280.1 Receptor-like pr...	[more]

BLAST of IVF0005075 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..65 e-value: 4.3E-9 score: 36.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005075.2	IVF0005075.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding