IVF0005033 (gene) Melon (IVF77) v1

Overview


Name	IVF0005033
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr01: 29766898 .. 29767842 (-)
RNA-Seq Expression	IVF0005033
Synteny	IVF0005033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAATAACTTCATCTCCAACAATCTTCTGATTGACCCTCCTCTAACAAATAACAGATACACTTGGTCAAACTTGAGAAATTCCCCCACCTTTTCCCGCCTAGACAGATTCTTGTTCAACTCTAGCTGGGAAATTCTCTTCAAACCTCATATCACAAGGACTCTCCCGAGACCTACTTCTGACCACTTCCCTCTAGTCTGTGAAGATTCCACCTCCACTCTCAGATGGGGCCCTGCTCCATTTAGATTAAACTCCATAGCTTTAAATGACCCTGAATTCAAAAGAAATATGGAAAGATGGTGGGAACTCTCGGTTCAAAATGGTCACCCCAGGTTTTCCTTCATTCAAAGGCTCAAGTCTTTAGCAAACCTCATCAAACCATGGCAAAAGGAGAAATTCCACTCCCTCATTTCTGCTAAAGAAAACATTATCAGGGAAGTGGATTCCATTGACAAGAAGGAGCTGGATACTCCTTTGTCTCAGGAGGAAAGCAACCGTAGACTTGCTCTAAAAGCTGAGCTCAGTGATCTATCCCTTAAGGAATCCCAATTCTGGTTCCAAAGGGCAAAAAAGCTTTGGCTTAAAGAGGGAGATGAAAATTCTGCCTTCTTTCACAGAATTTGTTCATCAAGACAGAAGAGAAATCTCATTCATGAAATCCAGGATGAAGAAGGCTCGATTCAGAATACAAACAATAATATTTCACTTGCCTTTGTCAAACACTTTTCAAGTATTTACAGATGTTCCACCAAAAGAGACCCTTTTTTCATTGAAAATCTTGATTGGAATCCAATTGATTACTCAGATTGGTCTCTCCTTTGTGCCCCCTTCTTGGAGGCAGAAATTAAAGGGGTCATCAAATCTTTTGATGGAAACAAGGCTAGCTCCCTGGTCCAGACGACTTTCCTATTTCCTTCTTTAAGTCTTATTGGCATCTTCTAA

mRNA sequence

ATGCTGAATAACTTCATCTCCAACAATCTTCTGATTGACCCTCCTCTAACAAATAACAGATACACTTGGTCAAACTTGAGAAATTCCCCCACCTTTTCCCGCCTAGACAGATTCTTGTTCAACTCTAGCTGGGAAATTCTCTTCAAACCTCATATCACAAGGACTCTCCCGAGACCTACTTCTGACCACTTCCCTCTAGTCTGTGAAGATTCCACCTCCACTCTCAGATGGGGCCCTGCTCCATTTAGATTAAACTCCATAGCTTTAAATGACCCTGAATTCAAAAGAAATATGGAAAGATGGTGGGAACTCTCGGTTCAAAATGGTCACCCCAGGTTTTCCTTCATTCAAAGGCTCAAGTCTTTAGCAAACCTCATCAAACCATGGCAAAAGGAGAAATTCCACTCCCTCATTTCTGCTAAAGAAAACATTATCAGGGAAGTGGATTCCATTGACAAGAAGGAGCTGGATACTCCTTTGTCTCAGGAGGAAAGCAACCGTAGACTTGCTCTAAAAGCTGAGCTCAGTGATCTATCCCTTAAGGAATCCCAATTCTGGTTCCAAAGGGCAAAAAAGCTTTGGCTTAAAGAGGGAGATGAAAATTCTGCCTTCTTTCACAGAATTTGTTCATCAAGACAGAAGAGAAATCTCATTCATGAAATCCAGGATGAAGAAGGCTCGATTCAGAATACAAACAATAATATTTCACTTGCCTTTGTCAAACACTTTTCAAGTATTTACAGATGTTCCACCAAAAGAGACCCTTTTTTCATTGAAAATCTTGATTGGAATCCAATTGATTACTCAGATTGGTCTCTCCTTTGTGCCCCCTTCTTGGAGGCAGAAATTAAAGGGGTCATCAAATCTTTTGATGGAAACAAGGCTAGCTCCCTGGTCCAGACGACTTTCCTATTTCCTTCTTTAAGTCTTATTGGCATCTTCTAA

Coding sequence (CDS)

ATGCTGAATAACTTCATCTCCAACAATCTTCTGATTGACCCTCCTCTAACAAATAACAGATACACTTGGTCAAACTTGAGAAATTCCCCCACCTTTTCCCGCCTAGACAGATTCTTGTTCAACTCTAGCTGGGAAATTCTCTTCAAACCTCATATCACAAGGACTCTCCCGAGACCTACTTCTGACCACTTCCCTCTAGTCTGTGAAGATTCCACCTCCACTCTCAGATGGGGCCCTGCTCCATTTAGATTAAACTCCATAGCTTTAAATGACCCTGAATTCAAAAGAAATATGGAAAGATGGTGGGAACTCTCGGTTCAAAATGGTCACCCCAGGTTTTCCTTCATTCAAAGGCTCAAGTCTTTAGCAAACCTCATCAAACCATGGCAAAAGGAGAAATTCCACTCCCTCATTTCTGCTAAAGAAAACATTATCAGGGAAGTGGATTCCATTGACAAGAAGGAGCTGGATACTCCTTTGTCTCAGGAGGAAAGCAACCGTAGACTTGCTCTAAAAGCTGAGCTCAGTGATCTATCCCTTAAGGAATCCCAATTCTGGTTCCAAAGGGCAAAAAAGCTTTGGCTTAAAGAGGGAGATGAAAATTCTGCCTTCTTTCACAGAATTTGTTCATCAAGACAGAAGAGAAATCTCATTCATGAAATCCAGGATGAAGAAGGCTCGATTCAGAATACAAACAATAATATTTCACTTGCCTTTGTCAAACACTTTTCAAGTATTTACAGATGTTCCACCAAAAGAGACCCTTTTTTCATTGAAAATCTTGATTGGAATCCAATTGATTACTCAGATTGGTCTCTCCTTTGTGCCCCCTTCTTGGAGGCAGAAATTAAAGGGGTCATCAAATCTTTTGATGGAAACAAGGCTAGCTCCCTGGTCCAGACGACTTTCCTATTTCCTTCTTTAAGTCTTATTGGCATCTTCTAA

Protein sequence

MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPTSDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLKSLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSLKESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFVKHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSLVQTTFLFPSLSLIGIF

Homology

[Close]

BLAST of IVF0005033 vs. ExPASy TrEMBL
Match: A0A5A7UTS4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3840G00080 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 3.5e-172
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT
Sbjct: 17  MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 76

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK
Sbjct: 77  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 136

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL
Sbjct: 137 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 196

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL 299
           KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL
Sbjct: 257 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL 314

[Close]

BLAST of IVF0005033 vs. ExPASy TrEMBL
Match: A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.2e-161
Identity = 279/295 (94.58%), Postives = 284/295 (96.27%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRN PTFSRLDRFL+NS WE LF PHITRTL RPT
Sbjct: 601 MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWETLFNPHITRTLSRPT 660

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDP+FKRNMERWWELSVQNGHP FSFI+RLK
Sbjct: 661 SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPKFKRNMERWWELSVQNGHPGFSFIRRLK 720

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSL SAKENIIREVDSIDK ELDTPLSQEESNRRLALKAELSDLSL
Sbjct: 721 SLANLIKPWQKEKFHSLTSAKENIIREVDSIDKNELDTPLSQEESNRRLALKAELSDLSL 780

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 781 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 840

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 296
            HFSSIYRCSTK+DP FIENL+WNPIDYSDWSLLCAPFLE EIKGVIKSFDGNKA
Sbjct: 841 NHFSSIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKA 895

[Close]

BLAST of IVF0005033 vs. ExPASy TrEMBL
Match: A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.0e-159
Identity = 276/295 (93.56%), Postives = 281/295 (95.25%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
            MLN+FISNNLLIDPPLTNNRYTWSNLRN PTFSRLDRFL+NS WEILF PHITRTLPRPT
Sbjct: 801  MLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHITRTLPRPT 860

Query: 61   SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
            SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHP F FIQRLK
Sbjct: 861  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGFFFIQRLK 920

Query: 121  SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
            SLANLIKPWQKEKF SL SAKENIIREVDSIDK ELDTPLS EESNRRLALKAEL+DLSL
Sbjct: 921  SLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKAELNDLSL 980

Query: 181  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
            KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 981  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 1040

Query: 241  KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 296
             HFS IYRCSTK+DP FIENL+WNPIDYSDWSLLCAPF E EIKGVIKSFDGNKA
Sbjct: 1041 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFSEEEIKGVIKSFDGNKA 1095

[Close]

BLAST of IVF0005033 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.0e-159
Identity = 276/295 (93.56%), Postives = 281/295 (95.25%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
            MLN+FISNNLLIDPPLTNNRYTWSNLRN PTFSRLDRFL+NS WEILF PHITRTLPRPT
Sbjct: 801  MLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHITRTLPRPT 860

Query: 61   SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
            SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHP F FIQRLK
Sbjct: 861  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGFFFIQRLK 920

Query: 121  SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
            SLANLIKPWQKEKF SL SAKENIIREVDSIDK ELDTPLS EESNRRLALKAEL+DLSL
Sbjct: 921  SLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKAELNDLSL 980

Query: 181  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
            KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 981  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 1040

Query: 241  KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 296
             HFS IYRCSTK+DP FIENL+WNPIDYSDWSLLCAPF E EIKGVIKSFDGNKA
Sbjct: 1041 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFSEEEIKGVIKSFDGNKA 1095

[Close]

BLAST of IVF0005033 vs. ExPASy TrEMBL
Match: A0A5A7USG2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004120 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.0e-159
Identity = 273/295 (92.54%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRN PTFS LDRFL+NSSWEILF PHITRTLPR T
Sbjct: 17  MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSHLDRFLYNSSWEILFNPHITRTLPRTT 76

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSI LNDPEFKRNMERWWELS+QNGHP FSFIQRLK
Sbjct: 77  SDHFPLVCEDSTSTLRWGPAPFRLNSITLNDPEFKRNMERWWELSIQNGHPGFSFIQRLK 136

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSL +AKENIIREVD+IDK ELDTPLSQEESNRRLALKAEL+DLSL
Sbjct: 137 SLANLIKPWQKEKFHSLTTAKENIIREVDAIDKNELDTPLSQEESNRRLALKAELNDLSL 196

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLW+KEGDEN AFFHRICSSRQKRNLIHEIQ+EEGSIQNTNNNISLAFV
Sbjct: 197 KESQFWFQRAKKLWIKEGDENYAFFHRICSSRQKRNLIHEIQNEEGSIQNTNNNISLAFV 256

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 296
            HFS IYRCSTK+DP FIENL+WNPIDYSDWSLLCAPFLE EIKGVIKSFDGNKA
Sbjct: 257 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKA 311

[Close]

BLAST of IVF0005033 vs. NCBI nr
Match: KAA0058554.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01631.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 610 bits (1573), Expect = 4.92e-210
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT
Sbjct: 17  MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 76

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK
Sbjct: 77  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 136

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL
Sbjct: 137 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 196

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL 298
           KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL
Sbjct: 257 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKASSL 314

[Close]

BLAST of IVF0005033 vs. NCBI nr
Match: KAA0058104.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 568 bits (1463), Expect = 2.11e-197
Identity = 273/295 (92.54%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRN PTFS LDRFL+NSSWEILF PHITRTLPR T
Sbjct: 17  MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSHLDRFLYNSSWEILFNPHITRTLPRTT 76

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSI LNDPEFKRNMERWWELS+QNGHP FSFIQRLK
Sbjct: 77  SDHFPLVCEDSTSTLRWGPAPFRLNSITLNDPEFKRNMERWWELSIQNGHPGFSFIQRLK 136

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSL +AKENIIREVD+IDK ELDTPLSQEESNRRLALKAEL+DLSL
Sbjct: 137 SLANLIKPWQKEKFHSLTTAKENIIREVDAIDKNELDTPLSQEESNRRLALKAELNDLSL 196

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLW+KEGDEN AFFHRICSSRQKRNLIHEIQ+EEGSIQNTNNNISLAFV
Sbjct: 197 KESQFWFQRAKKLWIKEGDENYAFFHRICSSRQKRNLIHEIQNEEGSIQNTNNNISLAFV 256

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 295
            HFS IYRCSTK+DP FIENL+WNPIDYSDWSLLCAPFLE EIKGVIKSFDGNKA
Sbjct: 257 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKA 311

[Close]

BLAST of IVF0005033 vs. NCBI nr
Match: TYK05808.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 575 bits (1482), Expect = 4.49e-191
Identity = 279/295 (94.58%), Postives = 284/295 (96.27%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPLTNNRYTWSNLRN PTFSRLDRFL+NS WE LF PHITRTL RPT
Sbjct: 601 MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWETLFNPHITRTLSRPT 660

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDP+FKRNMERWWELSVQNGHP FSFI+RLK
Sbjct: 661 SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPKFKRNMERWWELSVQNGHPGFSFIRRLK 720

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSL SAKENIIREVDSIDK ELDTPLSQEESNRRLALKAELSDLSL
Sbjct: 721 SLANLIKPWQKEKFHSLTSAKENIIREVDSIDKNELDTPLSQEESNRRLALKAELSDLSL 780

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 781 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 840

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 295
            HFSSIYRCSTK+DP FIENL+WNPIDYSDWSLLCAPFLE EIKGVIKSFDGNKA
Sbjct: 841 NHFSSIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKA 895

[Close]

BLAST of IVF0005033 vs. NCBI nr
Match: KAA0039309.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 568 bits (1463), Expect = 4.04e-189
Identity = 276/295 (93.56%), Postives = 281/295 (95.25%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
            MLN+FISNNLLIDPPLTNNRYTWSNLRN PTFSRLDRFL+NS WEILF PHITRTLPRPT
Sbjct: 801  MLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHITRTLPRPT 860

Query: 61   SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
            SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHP F FIQRLK
Sbjct: 861  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGFFFIQRLK 920

Query: 121  SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
            SLANLIKPWQKEKF SL SAKENIIREVDSIDK ELDTPLS EESNRRLALKAEL+DLSL
Sbjct: 921  SLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKAELNDLSL 980

Query: 181  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
            KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 981  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 1040

Query: 241  KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 295
             HFS IYRCSTK+DP FIENL+WNPIDYSDWSLLCAPF E EIKGVIKSFDGNKA
Sbjct: 1041 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFSEEEIKGVIKSFDGNKA 1095

[Close]

BLAST of IVF0005033 vs. NCBI nr
Match: KAA0034017.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK02813.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 542 bits (1397), Expect = 4.82e-187
Identity = 259/295 (87.80%), Postives = 278/295 (94.24%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNRYTWSNLRNSPTFSRLDRFLFNSSWEILFKPHITRTLPRPT 60
           MLNNFISNNLLIDPPL+NNRYTWSNLR  PTFSRLDRFL+NS+WE LF PHITRTLPRPT
Sbjct: 17  MLNNFISNNLLIDPPLSNNRYTWSNLRIPPTFSRLDRFLYNSNWEFLFNPHITRTLPRPT 76

Query: 61  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLK 120
           SDHFPLVCEDS+ T+RWGPAPFRLNSIALNDPEFKRNM+RWW+LS Q GHP F+FIQRLK
Sbjct: 77  SDHFPLVCEDSSPTVRWGPAPFRLNSIALNDPEFKRNMDRWWDLSAQKGHPDFAFIQRLK 136

Query: 121 SLANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSL 180
           SLANLIKPWQKEKFHSL SAK+NIIREVD+IDKKELDTPL QE+S+RRLALKAELSDLSL
Sbjct: 137 SLANLIKPWQKEKFHSLTSAKDNIIREVDAIDKKELDTPLCQEDSDRRLALKAELSDLSL 196

Query: 181 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 240
           KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256

Query: 241 KHFSSIYRCSTKRDPFFIENLDWNPIDYSDWSLLCAPFLEAEIKGVIKSFDGNKA 295
            +FS +YR STK+DP FI+NL+WNPIDYS+WS LCAPFLE EIKGVI SF+GNKA
Sbjct: 257 NYFSRLYRSSTKKDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKA 311

[Close]

BLAST of IVF0005033 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-13
Identity = 60/229 (26.20%), Postives = 103/229 (44.98%), Query Frame = 0


Query: 4   NFISNNLLIDPPLTNNRYTWSNLR-NSPTFSRLDRFLFNSSWEILFKPHITRTLPRPTSD 63
           N + ++ L+D P     YTWSN + ++P   +LDR + N  W   F   I        SD
Sbjct: 254 NCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSD 313

Query: 64  HFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPRFSFIQRLKSL 123
           H P +        R     FR  S     P F  ++   WE  +  G   FS  + LK+ 
Sbjct: 314 HSPCIIILENLPKR-SKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAA 373

Query: 124 ANLIKPWQKEKFHSLISAKENIIREVDSIDKKELDTPLSQEESNRRLALKAELSDLSLKE 183
               K   ++ F ++    +  +  ++SI  + L  P         +A K      +  E
Sbjct: 374 KKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALE 433

Query: 184 SQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQ-DEEGSIQN 231
           S F+ Q+++  WL++GD N+ FFH++  + Q +NLI  ++ D++  ++N
Sbjct: 434 S-FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVEN 480

The following BLAST results are available for this feature:

BLAST of IVF0005033 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTS4	3.5e-172	100.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C3M3	1.2e-161	94.58	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TDG1	2.0e-159	93.56	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BL61	2.0e-159	93.56	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7USG2	2.0e-159	92.54	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0005033 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058554.1	4.92e-210	100.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK016...	[more]
KAA0058104.1	2.11e-197	92.54	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK05808.1	4.49e-191	94.58	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039309.1	4.04e-189	93.56	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0034017.1	4.82e-187	87.80	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK028...	[more]

BLAST of IVF0005033 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	7.3e-13	26.20	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 214..234
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 2..246
None	No IPR available	PANTHER	PTHR33710:SF28	SUBFAMILY NOT NAMED	coord: 2..246
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..69 e-value: 6.5E-7 score: 31.3
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005033.2	IVF0005033.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0003953	NAD+ nucleosidase activity