IVF0004940 (gene) Melon (IVF77) v1

Overview


Name	IVF0004940
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-type domain-containing protein
Location	chr06: 13447797 .. 13449954 (+)
RNA-Seq Expression	IVF0004940
Synteny	IVF0004940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCAGAACTAGAAGGATCCACAGCAGGCACTTCAGAATTGAAACCACTTGGAATTGCAAATGATGCGGACAGTTTTCTTAGCCCTAGATTCAAGTCGGCGGCCGCTATGGCCGGCTGGGATGAAGAGGCTCTTCTAATCGCGAGCCTCGTGGTTGACGACACGCCGGAAAGAGAGTTTCAGCAGAAGAAACGATCTGATCTCCAGCGCAAGAGTCCTGCTTCTGCTTCTGCTTCAAGAAGGTAAATATATATATATTGATTGTGTTTCTTCTCTTGTTTTTTTGAGGTGAATCGTGGAGATATATGGGCAGATCTGAGAGTTTATTGTTCCAATTGGGATCGATTTGTTGGAAGTTGGAGTTCATTTCTTGTTTTTTTTTTTTCTTTTTGTAGGAAACGGAGGACTTTGACGAGCATAATTTCGATTCCGGTGACTGTTCTTGACCTCGAAGAAGAAGAACCCGCTGTGAAAGGTGTGAATTCTTCTCTCGAGTGCTTTGAGCATTTGGATTTCCTTTTGACCCTAATTAATTCCTTTTCTTCCCGACAAATATTTTTAGTTACCAATTTTTCAAAATTTTTGTGATGGATGTTTTCCTTTCTTGCCATTTCTTTAAAGGTTCATGCATGGAAACATTTGAATTCACAATCAAATTCTAATTACTAAATAAAGTTGACTTCAGACTAAGATTTTCACATGTTATTAACTTAGTATTTGAATTCTTAGACAAATTCTAAGTAACAATTCGATTTTTAATTTTCAAAAATTGACCTACAATAATCCTAGTCAAAAACCAAATTGTTACTAAAAAGAGTCTAGTTTTCAGATTACTCTTAAAAATTAGGTAACAAGGGTTAAAGAATGTTCATAAACTTAATTCTATGAACTTAATTCTCTTACATGGGTGATGTATGGTTAGAGTTTGAGAACTGTGCCCGTTTTCAAAATTTGATAGAGAAGTGAACAGAGTTGTGTCTAATGATATGAACAGATGATGGTCCAAAACAAGAGCCAAAATATGCAGAAGCTGAAGCAAAGAAGTGTGATTCAATGGTTGAACAGAAAGCTGACGCTTCTTCTTTATCATCTTCAACACTCCCATGCATGGATAAGCTCAGAGAAGAGCTTTCTTGTGCTGTAAGGATATTCTCTCCATTTACAAGCTTGAGACATCTTTTTGGATACTTCTCTCTCACTCTTAATTGTCTCTTTTGTTACCCCCTAATTCTTTTCACAGATTTGTTTGGAAATTTGCTTCGAACCTAGTACCACACCTTGTGGACACAGGTAAGCCCAAAACTAACTTCTTGTTCTTGCACTTAATTCTTGTTTTGGACTTTTGAATTTCTTTTAATTCCTAAACTATGCAGCAAAGTTATTTTTAGTTGATTTTTCATTAATCATTACATAAACTTTACCTTTTTTTTTTACCAAGTCAATTAGAAATTTAAAACGTAAATAGACATAAAATTGATATTTTTCTAACATACTCTATATTTTGATAAAATTCATACACTACTAAACTACAAGATACAAATTAAAGTTTAGATTGTCATATTAACAAACATGTTAGTTTTCAACATAACGAAAATGTCAATAATAAACTCGAAATGGAAATCTCAAGGATTTATTTGACATTTTTAAATTTTATTTGATCCATCCTGTGCAAACTTACACAAGTGGTTGAAAATTTGGAGTCTAAAGTTATGATGCTGAACTTTTGCTTTTTCAATCTTTTTGTAGTTTCTGCAAGAAATGTCTAAGATCTGCAGCTGACAAATGTGAAAAAGGTGCCCTAAATGCAGACAACTAATAAGGTTGAATTTGCAACCCCAAAAGTTCCATGAACCAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAGGCCCTTTATTCTAATGTTATTTTAAGAAATAACAAGAGAACTCTTTTGAGCAAGGATTTTTCATGTGCCTGCACATATGGGAGTCGAAACCTCTCGAAGGTCAACACTACTTCATCCTCAATCTAGTCCTATAAGTTGTAGTATGGGTAGAGGGCTTGTTACTGTGCATAAAATGTGTGATGACATATAA

mRNA sequence

ATGGTGTCAGAACTAGAAGGATCCACAGCAGGCACTTCAGAATTGAAACCACTTGGAATTGCAAATGATGCGGACAGTTTTCTTAGCCCTAGATTCAAGTCGGCGGCCGCTATGGCCGGCTGGGATGAAGAGGCTCTTCTAATCGCGAGCCTCGTGGTTGACGACACGCCGGAAAGAGAGTTTCAGCAGAAGAAACGATCTGATCTCCAGCGCAAGAGTCCTGCTTCTGCTTCTGCTTCAAGAAGGAAACGGAGGACTTTGACGAGCATAATTTCGATTCCGGTGACTGTTCTTGACCTCGAAGAAGAAGAACCCGCTGTGAAAGATGATGGTCCAAAACAAGAGCCAAAATATGCAGAAGCTGAAGCAAAGAAGTGTGATTCAATGGTTGAACAGAAAGCTGACGCTTCTTCTTTATCATCTTCAACACTCCCATGCATGGATAAGCTCAGAGAAGAGCTTTCTTGTGCTATTTGTTTGGAAATTTGCTTCGAACCTAGTACCACACCTTGTGGACACAGTTTCTGCAAGAAATGTCTAAGATCTGCAGCTGACAAATGTGAAAAAGCAAGGATTTTTCATGTGCCTGCACATATGGGAGTCGAAACCTCTCGAAGGTCAACACTACTTCATCCTCAATCTAGTCCTATAAGTTGTAGTATGGGTAGAGGGCTTGTTACTGTGCATAAAATGTGTGATGACATATAA

Coding sequence (CDS)

ATGGTGTCAGAACTAGAAGGATCCACAGCAGGCACTTCAGAATTGAAACCACTTGGAATTGCAAATGATGCGGACAGTTTTCTTAGCCCTAGATTCAAGTCGGCGGCCGCTATGGCCGGCTGGGATGAAGAGGCTCTTCTAATCGCGAGCCTCGTGGTTGACGACACGCCGGAAAGAGAGTTTCAGCAGAAGAAACGATCTGATCTCCAGCGCAAGAGTCCTGCTTCTGCTTCTGCTTCAAGAAGGAAACGGAGGACTTTGACGAGCATAATTTCGATTCCGGTGACTGTTCTTGACCTCGAAGAAGAAGAACCCGCTGTGAAAGATGATGGTCCAAAACAAGAGCCAAAATATGCAGAAGCTGAAGCAAAGAAGTGTGATTCAATGGTTGAACAGAAAGCTGACGCTTCTTCTTTATCATCTTCAACACTCCCATGCATGGATAAGCTCAGAGAAGAGCTTTCTTGTGCTATTTGTTTGGAAATTTGCTTCGAACCTAGTACCACACCTTGTGGACACAGTTTCTGCAAGAAATGTCTAAGATCTGCAGCTGACAAATGTGAAAAAGCAAGGATTTTTCATGTGCCTGCACATATGGGAGTCGAAACCTCTCGAAGGTCAACACTACTTCATCCTCAATCTAGTCCTATAAGTTGTAGTATGGGTAGAGGGCTTGTTACTGTGCATAAAATGTGTGATGACATATAA

Protein sequence

MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPEREFQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAEAEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKARIFHVPAHMGVETSRRSTLLHPQSSPISCSMGRGLVTVHKMCDDI

Homology

[Close]

BLAST of IVF0004940 vs. ExPASy Swiss-Prot
Match: Q61510 (E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus OX=10090 GN=Trim25 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-06
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 147 MDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 181
           ++ L EELSC++CLE+  EP TTPCGH+FC  CL
Sbjct: 4   LNPLAEELSCSVCLELFKEPVTTPCGHNFCMSCL 37

[Close]

BLAST of IVF0004940 vs. ExPASy Swiss-Prot
Match: Q6PJ69 (Tripartite motif-containing protein 65 OS=Homo sapiens OX=9606 GN=TRIM65 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 8.2e-06
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 150 LREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKA 191
           L E+L+CAICL +  +P T PCGH+FC  C+R   D+C KA
Sbjct: 6   LEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKA 46

[Close]

BLAST of IVF0004940 vs. ExPASy Swiss-Prot
Match: Q8BVP1 (Probable E3 ubiquitin-protein ligase TRIML1 OS=Mus musculus OX=10090 GN=Triml1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 142 STLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 181
           ST   M+ LREEL+C ICL+    P TT CGHSFC  CL
Sbjct: 8   STTDLMENLREELTCFICLDYFSSPVTTECGHSFCLMCL 46

[Close]

BLAST of IVF0004940 vs. ExPASy Swiss-Prot
Match: Q14258 (E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens OX=9606 GN=TRIM25 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 3.1e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 150 LREELSCAICLEICFEPSTTPCGHSFCKKCL 181
           L EELSC+ICLE   EP TTPCGH+FC  CL
Sbjct: 7   LAEELSCSICLEPFKEPVTTPCGHNFCGSCL 37

[Close]

BLAST of IVF0004940 vs. ExPASy Swiss-Prot
Match: Q8N9V2 (Probable E3 ubiquitin-protein ligase TRIML1 OS=Homo sapiens OX=9606 GN=TRIML1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.1e-05
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 142 STLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 181
           ST   M+ LREEL+C ICL+    P TT CGHSFC  CL
Sbjct: 2   STADLMENLREELTCFICLDYFSSPVTTECGHSFCLVCL 40

[Close]

BLAST of IVF0004940 vs. ExPASy TrEMBL
Match: A0A5A7URU5 (LON peptidase N-terminal domain and RING finger protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00490 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.6e-95
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60
           MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE
Sbjct: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60

Query: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120
           FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE
Sbjct: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120

Query: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180
           AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL
Sbjct: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180

Query: 181 RSAADKCEK 190
           RSAADKC K
Sbjct: 181 RSAADKCGK 189

[Close]

BLAST of IVF0004940 vs. ExPASy TrEMBL
Match: A0A1S3BPD3 (LON peptidase N-terminal domain and RING finger protein 3-like OS=Cucumis melo OX=3656 GN=LOC103491762 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.6e-95
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60
           MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE
Sbjct: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60

Query: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120
           FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE
Sbjct: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120

Query: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180
           AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL
Sbjct: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180

Query: 181 RSAADKCEK 190
           RSAADKC K
Sbjct: 181 RSAADKCGK 189

[Close]

BLAST of IVF0004940 vs. ExPASy TrEMBL
Match: A0A0A0LBY2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592120 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.3e-82
Identity = 169/184 (91.85%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 6   EGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPEREFQQKK 65
           EGSTA  SE KPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPEREFQQKK
Sbjct: 4   EGSTASASESKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPEREFQQKK 63

Query: 66  RSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAEAEAKK 125
           RS LQRKSP  AS SRRKRRTLTSIISIPV VLDL+E EP VKDDGPKQEPK AEAEAKK
Sbjct: 64  RSVLQRKSP--ASGSRRKRRTLTSIISIPVAVLDLDETEPTVKDDGPKQEPKSAEAEAKK 123

Query: 126 CDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAAD 185
            DSMVEQKADASSL+SSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAAD
Sbjct: 124 SDSMVEQKADASSLTSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAAD 183

Query: 186 KCEK 190
           KC K
Sbjct: 184 KCGK 185

[Close]

BLAST of IVF0004940 vs. ExPASy TrEMBL
Match: A0A6J1F9B4 (E3 ubiquitin-protein ligase ORTHRUS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111441989 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 6.6e-67
Identity = 146/191 (76.44%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 6   EGSTAGTS-------ELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPE 65
           EGS A  S       E +PL   NDADSF SPRFKSAAAMAGWDEEALLIASLVVDDTPE
Sbjct: 4   EGSRASASEPERRAIESRPLESGNDADSFFSPRFKSAAAMAGWDEEALLIASLVVDDTPE 63

Query: 66  REFQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKY 125
           REFQQKKRS L  KSP   S SRRKRRT TSIISIPV VLDL+ EEP V+DD  KQ+P+ 
Sbjct: 64  REFQQKKRSVLHCKSP--TSGSRRKRRTSTSIISIPVAVLDLDAEEPTVRDDATKQDPET 123

Query: 126 AEAEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK 185
           AEAE KK +S++EQKA  SSLS STLPC+DKLREELSCAICLEICFEPSTTPCGHSFCKK
Sbjct: 124 AEAEPKKSNSLIEQKAGDSSLSCSTLPCIDKLREELSCAICLEICFEPSTTPCGHSFCKK 183

Query: 186 CLRSAADKCEK 190
           CLRSAAD+C K
Sbjct: 184 CLRSAADRCGK 192

[Close]

BLAST of IVF0004940 vs. ExPASy TrEMBL
Match: A0A6J1J0X7 (E3 ubiquitin-protein ligase TRIM39-like OS=Cucurbita maxima OX=3661 GN=LOC111482456 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.5e-66
Identity = 147/191 (76.96%), Postives = 155/191 (81.15%), Query Frame = 0


Query: 6   EGSTAGTS-------ELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPE 65
           EGSTA  S       E +PL   NDADSF SPRFKSAAAMAGWDEEALLIASLVVDDTPE
Sbjct: 4   EGSTASASEPEQRVIESRPLECGNDADSFFSPRFKSAAAMAGWDEEALLIASLVVDDTPE 63

Query: 66  REFQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKY 125
           REFQQKKRS L  KSP   S SRRKRR  TS ISIPV VLDL+ EEP VKDD  KQ+P+ 
Sbjct: 64  REFQQKKRSVLHCKSP--TSGSRRKRRISTSKISIPVAVLDLDAEEPTVKDDATKQDPET 123

Query: 126 AEAEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK 185
           AEAE KK DS++EQKA ASSLS STLP +DKLREELSCAICLEICFEPSTTPCGHSFCKK
Sbjct: 124 AEAEPKKSDSLIEQKAGASSLSCSTLPFIDKLREELSCAICLEICFEPSTTPCGHSFCKK 183

Query: 186 CLRSAADKCEK 190
           CLRSAAD+C K
Sbjct: 184 CLRSAADRCGK 192

[Close]

BLAST of IVF0004940 vs. NCBI nr
Match: XP_008450054.1 (PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Cucumis melo])

HSP 1 Score: 356 bits (914), Expect = 8.07e-120
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60
           MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE
Sbjct: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60

Query: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120
           FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE
Sbjct: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120

Query: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180
           AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL
Sbjct: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180

Query: 181 RSAADKCEK 189
           RSAADKC K
Sbjct: 181 RSAADKCGK 189

[Close]

BLAST of IVF0004940 vs. NCBI nr
Match: KAA0056261.1 (LON peptidase N-terminal domain and RING finger protein 3-like [Cucumis melo var. makuwa] >TYK05240.1 LON peptidase N-terminal domain and RING finger protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 356 bits (914), Expect = 8.07e-120
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60
           MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE
Sbjct: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60

Query: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120
           FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE
Sbjct: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120

Query: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180
           AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL
Sbjct: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180

Query: 181 RSAADKCEK 189
           RSAADKC K
Sbjct: 181 RSAADKCGK 189

[Close]

BLAST of IVF0004940 vs. NCBI nr
Match: XP_004145719.1 (uncharacterized protein LOC101209296 [Cucumis sativus] >KGN58207.1 hypothetical protein Csa_017490 [Cucumis sativus])

HSP 1 Score: 313 bits (801), Expect = 9.02e-103
Identity = 172/189 (91.01%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 1   MVSELEGSTAGTSELKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60
           MVSE  GSTA  SE KPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE
Sbjct: 1   MVSE--GSTASASESKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPERE 60

Query: 61  FQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKYAE 120
           FQQKKRS LQRKSPAS S  RRKRRTLTSIISIPV VLDL+E EP VKDDGPKQEPK AE
Sbjct: 61  FQQKKRSVLQRKSPASGS--RRKRRTLTSIISIPVAVLDLDETEPTVKDDGPKQEPKSAE 120

Query: 121 AEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180
           AEAKK DSMVEQKADASSL+SSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL
Sbjct: 121 AEAKKSDSMVEQKADASSLTSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 180

Query: 181 RSAADKCEK 189
           RSAADKC K
Sbjct: 181 RSAADKCGK 185

[Close]

BLAST of IVF0004940 vs. NCBI nr
Match: XP_038895790.1 (putative E3 ubiquitin-protein ligase RING1a [Benincasa hispida])

HSP 1 Score: 287 bits (734), Expect = 1.75e-92
Identity = 158/191 (82.72%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 6   EGSTAGTSE-------LKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPE 65
           EGSTA  SE        KP GI ND +SFLSPRFKSAAAMAGWDEE LLIASLVVDDTPE
Sbjct: 4   EGSTASASEPERRTIESKPPGIGNDVESFLSPRFKSAAAMAGWDEETLLIASLVVDDTPE 63

Query: 66  REFQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKY 125
           RE QQKKRS LQRKSPAS    RRKRRTLTSIIS+PVTVLDL+EEEP VKDD PKQ+P+ 
Sbjct: 64  RELQQKKRSVLQRKSPASGL--RRKRRTLTSIISVPVTVLDLDEEEPTVKDDAPKQDPET 123

Query: 126 AEAEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK 185
           AEAE KK DSMVEQK DASSLS STLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK
Sbjct: 124 AEAEPKKSDSMVEQKVDASSLSCSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK 183

Query: 186 CLRSAADKCEK 189
           CLRSAADKC K
Sbjct: 184 CLRSAADKCGK 192

[Close]

BLAST of IVF0004940 vs. NCBI nr
Match: KAG7017808.1 (Tripartite motif-containing protein 65, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264 bits (675), Expect = 1.22e-83
Identity = 147/191 (76.96%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 6   EGSTAGTSE-------LKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPE 65
           EGSTA  SE        +PL   NDADSF SPRFKSAAAMAGWDEEALLIASLVVDDTPE
Sbjct: 4   EGSTASASEPERRAIESRPLESGNDADSFFSPRFKSAAAMAGWDEEALLIASLVVDDTPE 63

Query: 66  REFQQKKRSDLQRKSPASASASRRKRRTLTSIISIPVTVLDLEEEEPAVKDDGPKQEPKY 125
           REFQQKKRS L  KSP S S  RRKRRT TSIISIPV VLDL+ EEP V+DD  KQ+P+ 
Sbjct: 64  REFQQKKRSVLHCKSPTSGS--RRKRRTSTSIISIPVAVLDLDAEEPTVRDDATKQDPET 123

Query: 126 AEAEAKKCDSMVEQKADASSLSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKK 185
           AEAE KK +S++EQKA  SSLS STLPC+DKLREELSCAICLEICFEPSTTPCGHSFCKK
Sbjct: 124 AEAEPKKSNSLIEQKAGDSSLSCSTLPCIDKLREELSCAICLEICFEPSTTPCGHSFCKK 183

Query: 186 CLRSAADKCEK 189
           CLRSAAD+C K
Sbjct: 184 CLRSAADRCGK 192

[Close]

BLAST of IVF0004940 vs. TAIR 10
Match: AT3G27330.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 165.6 bits (418), Expect = 4.7e-41
Identity = 102/187 (54.55%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 11  GTSELKPLGIAND-----ADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPER-EFQQK 70
           G++  K + IA +     A+ F+SPRFKSAAAMAGWDEE L+IAS VVDDTPER   +++
Sbjct: 575 GSNGSKEVSIAREKNGENAEIFISPRFKSAAAMAGWDEEDLIIASFVVDDTPERSSSKRR 634

Query: 71  KRSDLQRKSPASASASRRKRRTLTSIISIPVTVLD---LEEEEPAVKDDGPKQEPKYAEA 130
           +RS+L  KS   + +SRR +R   S++ +PV  LD     EEE + +    K+E +    
Sbjct: 635 RRSNLLFKSTPPSGSSRRNQRVKQSLVPLPVIDLDKVIRHEEEKSAEKKKKKREMETETK 694

Query: 131 EAKKCDSMVEQKADASSLSSS-TLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCL 188
           E KK D       D  SLS    LPC+DKLR+ELSCAICLEICFEPSTT CGHSFCKKCL
Sbjct: 695 EEKKIDK------DEKSLSDHVVLPCIDKLRDELSCAICLEICFEPSTTTCGHSFCKKCL 754

[Close]

BLAST of IVF0004940 vs. TAIR 10
Match: AT1G18660.4 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 147 MDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKARIFHVPAHMGVETSRR 206
           M +  ++  C +CL++ +EP+TTPCGH+FC+ CL  + D+  K  +      M   T   
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246

Query: 207 STLLH 212
           S  L+
Sbjct: 247 SVTLN 251

[Close]

BLAST of IVF0004940 vs. TAIR 10
Match: AT1G18660.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 147 MDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKARIFHVPAHMGVETSRR 206
           M +  ++  C +CL++ +EP+TTPCGH+FC+ CL  + D+  K  +      M   T   
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246

Query: 207 STLLH 212
           S  L+
Sbjct: 247 SVTLN 251

[Close]

BLAST of IVF0004940 vs. TAIR 10
Match: AT1G18660.3 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 147 MDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKARIFHVPAHMGVETSRR 206
           M +  ++  C +CL++ +EP+TTPCGH+FC+ CL  + D+  K  +      M   T   
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246

Query: 207 STLLH 212
           S  L+
Sbjct: 247 SVTLN 251

[Close]

BLAST of IVF0004940 vs. TAIR 10
Match: AT1G18660.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 147 MDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCEKARIFHVPAHMGVETSRR 206
           M +  ++  C +CL++ +EP+TTPCGH+FC+ CL  + D+  K  +      M   T   
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246

Query: 207 STLLH 212
           S  L+
Sbjct: 247 SVTLN 251

The following BLAST results are available for this feature:

BLAST of IVF0004940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q61510	4.8e-06	61.76	E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus OX=10090 GN=Trim25 PE=1 SV=2	[more]
Q6PJ69	8.2e-06	53.66	Tripartite motif-containing protein 65 OS=Homo sapiens OX=9606 GN=TRIM65 PE=1 SV...	[more]
Q8BVP1	2.4e-05	58.97	Probable E3 ubiquitin-protein ligase TRIML1 OS=Mus musculus OX=10090 GN=Triml1 P...	[more]
Q14258	3.1e-05	70.97	E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens OX=9606 GN=TRIM25 PE=1 SV=2	[more]
Q8N9V2	3.1e-05	58.97	Probable E3 ubiquitin-protein ligase TRIML1 OS=Homo sapiens OX=9606 GN=TRIML1 PE...	[more]

BLAST of IVF0004940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URU5	2.6e-95	99.47	LON peptidase N-terminal domain and RING finger protein 3-like OS=Cucumis melo v...	[more]
A0A1S3BPD3	2.6e-95	99.47	LON peptidase N-terminal domain and RING finger protein 3-like OS=Cucumis melo O...	[more]
A0A0A0LBY2	3.3e-82	91.85	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592120 P...	[more]
A0A6J1F9B4	6.6e-67	76.44	E3 ubiquitin-protein ligase ORTHRUS 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J0X7	1.5e-66	76.96	E3 ubiquitin-protein ligase TRIM39-like OS=Cucurbita maxima OX=3661 GN=LOC111482...	[more]

BLAST of IVF0004940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450054.1	8.07e-120	99.47	PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Cucum...	[more]
KAA0056261.1	8.07e-120	99.47	LON peptidase N-terminal domain and RING finger protein 3-like [Cucumis melo var...	[more]
XP_004145719.1	9.02e-103	91.01	uncharacterized protein LOC101209296 [Cucumis sativus] >KGN58207.1 hypothetical ...	[more]
XP_038895790.1	1.75e-92	82.72	putative E3 ubiquitin-protein ligase RING1a [Benincasa hispida]	[more]
KAG7017808.1	1.22e-83	76.96	Tripartite motif-containing protein 65, partial [Cucurbita argyrosperma subsp. a...	[more]

BLAST of IVF0004940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27330.1	4.7e-41	54.55	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G18660.4	3.4e-07	33.85	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G18660.2	3.4e-07	33.85	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G18660.3	3.4e-07	33.85	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G18660.1	3.4e-07	33.85	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 156..190 e-value: 2.8E-4 score: 30.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 156..191 score: 10.320587
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 156..182 e-value: 9.7E-7 score: 28.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 107..225 e-value: 4.8E-15 score: 57.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
None	No IPR available	PANTHER	PTHR23328:SF6	SUBFAMILY NOT NAMED	coord: 23..188
None	No IPR available	PANTHER	PTHR23328	UNCHARACTERIZED	coord: 23..188
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 149..196
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 171..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004940.2	IVF0004940.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding