IVF0004920 (gene) Melon (IVF77) v1

Overview


Name	IVF0004920
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNase H domain-containing protein
Location	chr04: 7568490 .. 7568717 (-)
RNA-Seq Expression	IVF0004920
Synteny	IVF0004920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCAGACGGTGCAAACGCGCGGATGATGGCTGCGTTCGTCGGGTGAAGAAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCGTTGGCTTCGTGAAGGCAGTCGAGGACGCGCGAACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCATCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTGTCGCGCGCCTTTAG

mRNA sequence

ATGGACGGCAGACGGTGCAAACGCGCGGATGATGGCTGCGTTCGTCGGGTGAAGAAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCGTTGGCTTCGTGAAGGCAGTCGAGGACGCGCGAACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCATCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTGTCGCGCGCCTTTAG

Coding sequence (CDS)

ATGGACGGCAGACGGTGCAAACGCGCGGATGATGGCTGCGTTCGTCGGGTGAAGAAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCGTTGGCTTCGTGAAGGCAGTCGAGGACGCGCGAACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCATCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTGTCGCGCGCCTTTAG

Protein sequence

MDGRRCKRADDGCVRRVKKLKRRRRRTAWRWLREGSRGRANGGGDTNGGERMETAASDDVGRRRRWNGWGGVARL

Homology

[Close]

BLAST of IVF0004920 vs. ExPASy TrEMBL
Match: A0A5A7URF1 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00330 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 2  DGRRCKRADDGCVRRVKKLKRRRRRTAWRWLREGSRGRANGGGDTNGGERMETAASDDVG 61
          DGRR KRADDGCVRRVKKLKRRRRRTAWRWLREG RGRA+GGGDTN GERMETAA     
Sbjct: 27 DGRRRKRADDGCVRRVKKLKRRRRRTAWRWLREGRRGRADGGGDTNRGERMETAAVGRCR 86

Query: 62 RRRRWNGWGGVAR 75
          +++R    GGV+R
Sbjct: 87 KKKRMERLGGVSR 99

[Close]

BLAST of IVF0004920 vs. ExPASy TrEMBL
Match: A0A5A7U9S5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00860 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 2  DGRRCKRADDGCVRRVKKLKRRRRRTAWRWLREGSRGRANGGGDTNGGERMETAASDDVG 61
          DG+RCKRADDG VRRVKK KRRRRRTAWRWLREGSRGRA+GGGDTNGGERMETAA     
Sbjct: 6  DGKRCKRADDGSVRRVKKRKRRRRRTAWRWLREGSRGRADGGGDTNGGERMETAAVGRCR 65

Query: 62 RRRRWNGWGG 72
          ++++    GG
Sbjct: 66 KKKKMERLGG 75

[Close]

BLAST of IVF0004920 vs. NCBI nr
Match: KAA0056205.1 (uncharacterized protein E6C27_scaffold431G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 3.17e-24
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 2  DGRRCKRADDGCVRRVKKLKRRRRRTAWRWLREGSRGRANGGGDTNGGERMETAASDDVG 61
          DGRR KRADDGCVRRVKKLKRRRRRTAWRWLREG RGRA+GGGDTN GERMETAA     
Sbjct: 27 DGRRRKRADDGCVRRVKKLKRRRRRTAWRWLREGRRGRADGGGDTNRGERMETAAVGRCR 86

Query: 62 RRRRWNGWGGVAR 74
          +++R    GGV+R
Sbjct: 87 KKKRMERLGGVSR 99

[Close]

BLAST of IVF0004920 vs. NCBI nr
Match: KAA0050355.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 2.20e-23
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 2  DGRRCKRADDGCVRRVKKLKRRRRRTAWRWLREGSRGRANGGGDTNGGERMETAASDDVG 61
          DG+RCKRADDG VRRVKK KRRRRRTAWRWLREGSRGRA+GGGDTNGGERMETAA   VG
Sbjct: 6  DGKRCKRADDGSVRRVKKRKRRRRRTAWRWLREGSRGRADGGGDTNGGERMETAA---VG 65

Query: 62 RRRR 65
          R R+
Sbjct: 66 RCRK 66

The following BLAST results are available for this feature:

BLAST of IVF0004920 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URF1	3.7e-19	76.71	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9S5	2.4e-18	75.71	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G008...	[more]

BLAST of IVF0004920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056205.1	3.17e-24	76.71	uncharacterized protein E6C27_scaffold431G00330 [Cucumis melo var. makuwa]	[more]
KAA0050355.1	2.20e-23	85.94	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004920.1	IVF0004920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity