IVF0004890 (gene) Melon (IVF77) v1

Overview


Name	IVF0004890
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr09: 7400059 .. 7400508 (+)
RNA-Seq Expression	IVF0004890
Synteny	IVF0004890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTCATTGCGTACCCCGAGGCATGTATGAACTAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAAATACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCAGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGGTAAGAAACATAAATTAAACGTCCCGCTACTTATCCAGTGTACATTTACTTCACAAATTTTGTTTAAGTATATGTAAGTGGTCCTCGTTTTTTATGCAGAGCATTCTGTAA

mRNA sequence

ATGGCTACCTCATTGCGTACCCCGAGGCATTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAAATACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCAGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA

Coding sequence (CDS)

ATGGCTACCTCATTGCGTACCCCGAGGCATTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAAATACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCAGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA

Protein sequence

MATSLRTPRHCLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL

Homology

[Close]

BLAST of IVF0004890 vs. ExPASy TrEMBL
Match: A0A5A7TAW0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00970 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 18  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC 77
           MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC
Sbjct: 1   MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC 60

Query: 78  SGLDWNVSAKCIIAEKELFDNWVRSIL 105
           SGLDWNVSAKCIIAEKELFDNWVRSIL
Sbjct: 61  SGLDWNVSAKCIIAEKELFDNWVRSIL 87

[Close]

BLAST of IVF0004890 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.8e-39
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRS 103
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCIIAEKELFDNWVRS
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRS 114

[Close]

BLAST of IVF0004890 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRS 103
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVRS
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]

BLAST of IVF0004890 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRS 103
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVRS
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]

BLAST of IVF0004890 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRS 103
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVRS
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]

BLAST of IVF0004890 vs. NCBI nr
Match: KAA0040594.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (487), Expect = 5.73e-60
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 18  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC 77
           MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC
Sbjct: 1   MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPAC 60

Query: 78  SGLDWNVSAKCIIAEKELFDNWVRSIL 104
           SGLDWNVSAKCIIAEKELFDNWVRSIL
Sbjct: 61  SGLDWNVSAKCIIAEKELFDNWVRSIL 87

[Close]

BLAST of IVF0004890 vs. NCBI nr
Match: KAA0053616.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 1.37e-51
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVR 101
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]

BLAST of IVF0004890 vs. NCBI nr
Match: KAA0059075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 1.37e-51
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVLTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVR 101
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]

BLAST of IVF0004890 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 1.37e-51
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVR 101
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCI+AEKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]

BLAST of IVF0004890 vs. NCBI nr
Match: KAA0032394.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 1.99e-51
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQ 60
           M+TS R PRH            CL++LV M GWK DNGTF P YLAQ VRMMAEK+ GCQ
Sbjct: 1   MSTSNRAPRHVWMKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQ 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRS 102
           VRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KCIIAEKELFDNWVRS
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRS 114

The following BLAST results are available for this feature:

BLAST of IVF0004890 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAW0	4.1e-45	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKT2	9.8e-39	71.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CWL2	1.7e-38	71.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TRV1	1.7e-38	71.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.7e-38	71.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0004890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040594.1	5.73e-60	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK05636.1 retrotransposon p...	[more]
KAA0053616.1	1.37e-51	70.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059075.1	1.37e-51	70.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036099.1	1.37e-51	70.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032394.1	1.99e-51	71.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 11..102
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 11..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004890.1	IVF0004890.1	mRNA