IVF0004872 (gene) Melon (IVF77) v1

Overview


Name	IVF0004872
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Flagellar radial spoke protein 5 isoform X3
Location	chr05: 13158739 .. 13159281 (-)
RNA-Seq Expression	IVF0004872
Synteny	IVF0004872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGATCACTCACCGGAGCTTCTCGAACCTCACTTCCTTTAAATCCTTCACAGCTGAGACAAGAAGACATTATGAAAGGAGAAAGCTTGGAGCTAAAAGCTCTATTAAGTGCTCTCAGACATTGGAAGGGTTCACCCAAACTGTTATGGTGTCAAATAGTAAGGATTTATTAGAATTTTGTCGAGTCCTCAATGGAATGTGGCAGACTAGTGGTGGATGGAGGAGAATTAACCGTGACACCACGGTGGAGGCAATGCTCCGATATGTCGACATCGGACTTATAACCTTTGATATGGCCGACCACTATTCTGAAGCATTTCTGCACCGATTAGGTCTACACCTTCTCAACATGGCACTAATGACGCTTCGGTTGTTGATGAAGAAATTAATTCTTTTTCCCCAGATCATCTCCCTCTTCAATCTGAATCTGAATCACTTGGAGGTGTTCATGATTCTCAGGGAGCTTCCAACTCCATCGATGTCGATGAACTCGCTTGTTTTGCTATCGTGGAACACAACAAAGAAGAGTCGCAGTTGA

mRNA sequence

ATGGAAGCGATCACTCACCGGAGCTTCTCGAACCTCACTTCCTTTAAATCCTTCACAGCTGAGACAAGAAGACATTATGAAAGGAGAAAGCTTGGAGCTAAAAGCTCTATTAAGTGCTCTCAGACATTGGAAGGGTTCACCCAAACTGTTATGGTGTCAAATAGTAAGGATTTATTAGAATTTTGTCGAGTCCTCAATGGAATGTGGCAGACTAGTGGTGGATGGAGGAGAATTAACCGTGACACCACGGTGGAGGCAATGCTCCGATATGTCGACATCGGACTTATAACCTTTGATATGGCCGACCACTATTCTGAAGCATTTCTGCACCGATTAGGTCTACACCTTCTCAACATGGCACTAATGACGCTTCGGTTGTTGATGAAGAAATTAATTCTTTTTCCCCAGATCATCTCCCTCTTCAATCTGAATCTGAATCACTTGGAGGTGTTCATGATTCTCAGGGAGCTTCCAACTCCATCGATGTCGATGAACTCGCTTGTTTTGCTATCGTGGAACACAACAAAGAAGAGTCGCAGTTGA

Coding sequence (CDS)

ATGGAAGCGATCACTCACCGGAGCTTCTCGAACCTCACTTCCTTTAAATCCTTCACAGCTGAGACAAGAAGACATTATGAAAGGAGAAAGCTTGGAGCTAAAAGCTCTATTAAGTGCTCTCAGACATTGGAAGGGTTCACCCAAACTGTTATGGTGTCAAATAGTAAGGATTTATTAGAATTTTGTCGAGTCCTCAATGGAATGTGGCAGACTAGTGGTGGATGGAGGAGAATTAACCGTGACACCACGGTGGAGGCAATGCTCCGATATGTCGACATCGGACTTATAACCTTTGATATGGCCGACCACTATTCTGAAGCATTTCTGCACCGATTAGGTCTACACCTTCTCAACATGGCACTAATGACGCTTCGGTTGTTGATGAAGAAATTAATTCTTTTTCCCCAGATCATCTCCCTCTTCAATCTGAATCTGAATCACTTGGAGGTGTTCATGATTCTCAGGGAGCTTCCAACTCCATCGATGTCGATGAACTCGCTTGTTTTGCTATCGTGGAACACAACAAAGAAGAGTCGCAGTTGA

Protein sequence

MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLEFCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRLGLHLLNMALMTLRLLMKKLILFPQIISLFNLNLNHLEVFMILRELPTPSMSMNSLVLLSWNTTKKSRS

Homology

[Close]

BLAST of IVF0004872 vs. ExPASy TrEMBL
Match: A0A5D3DFB8 (Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001280 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE
Sbjct: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 113
           FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL
Sbjct: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112

[Close]

BLAST of IVF0004872 vs. ExPASy TrEMBL
Match: A0A5A7U6H2 (Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001550 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.8e-55
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           MEAITHRSF NLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGF QTVMVSNSKDLLE
Sbjct: 1   MEAITHRSFLNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFAQTVMVSNSKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 113
           FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL
Sbjct: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112

[Close]

BLAST of IVF0004872 vs. ExPASy TrEMBL
Match: A0A5A7UQB5 (Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001410 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-42
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M AITHRSF NL +FKSFTAETRR YERRKLGAKSSIKC QT EGFTQTVMVSN KDLLE
Sbjct: 1   MAAITHRSFLNLIAFKSFTAETRRRYERRKLGAKSSIKCFQTSEGFTQTVMVSNGKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLH 111
           FCRVLNGMWQTS GW RI+RD  +EAMLRY D GL TFD+ DHY+EA +H
Sbjct: 61  FCRVLNGMWQTSDGWGRIDRDAAMEAMLRYADAGLTTFDIVDHYTEASMH 110

[Close]

BLAST of IVF0004872 vs. ExPASy TrEMBL
Match: A0A1S4E206 (flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.1e-40
Identity = 85/107 (79.44%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M  ITHRSF NLT+FKSFTAETRR YERRKLGAKSS+ CSQTLEG  QTV VSN KD LE
Sbjct: 1   MATITHRSFLNLTAFKSFTAETRRRYERRKLGAKSSVNCSQTLEGSAQTVAVSNGKDSLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEA 108
            CRVLNGMWQTSGGW RI+RD  VEAMLRY D GL TFDMADHY  A
Sbjct: 61  ICRVLNGMWQTSGGWGRIDRDAAVEAMLRYADAGLTTFDMADHYGPA 107

[Close]

BLAST of IVF0004872 vs. ExPASy TrEMBL
Match: A0A1S3C7R4 (flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.1e-40
Identity = 85/107 (79.44%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M  ITHRSF NLT+FKSFTAETRR YERRKLGAKSS+ CSQTLEG  QTV VSN KD LE
Sbjct: 1   MATITHRSFLNLTAFKSFTAETRRRYERRKLGAKSSVNCSQTLEGSAQTVAVSNGKDSLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEA 108
            CRVLNGMWQTSGGW RI+RD  VEAMLRY D GL TFDMADHY  A
Sbjct: 61  ICRVLNGMWQTSGGWGRIDRDAAVEAMLRYADAGLTTFDMADHYGPA 107

[Close]

BLAST of IVF0004872 vs. NCBI nr
Match: TYK22233.1 (flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (580), Expect = 2.59e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE
Sbjct: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112
           FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL
Sbjct: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112

[Close]

BLAST of IVF0004872 vs. NCBI nr
Match: KAA0051412.1 (flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (569), Expect = 1.22e-71
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           MEAITHRSF NLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGF QTVMVSNSKDLLE
Sbjct: 1   MEAITHRSFLNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFAQTVMVSNSKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112
           FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL
Sbjct: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLHRL 112

[Close]

BLAST of IVF0004872 vs. NCBI nr
Match: KAA0057300.1 (flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 9.54e-56
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M AITHRSF NL +FKSFTAETRR YERRKLGAKSSIKC QT EGFTQTVMVSN KDLLE
Sbjct: 1   MAAITHRSFLNLIAFKSFTAETRRRYERRKLGAKSSIKCFQTSEGFTQTVMVSNGKDLLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEAFLH 110
           FCRVLNGMWQTS GW RI+RD  +EAMLRY D GL TFD+ DHY+EA +H
Sbjct: 61  FCRVLNGMWQTSDGWGRIDRDAAMEAMLRYADAGLTTFDIVDHYTEASMH 110

[Close]

BLAST of IVF0004872 vs. NCBI nr
Match: XP_008458596.1 (PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo])

HSP 1 Score: 174 bits (442), Expect = 1.43e-49
Identity = 85/107 (79.44%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M  ITHRSF NLT+FKSFTAETRR YERRKLGAKSS+ CSQTLEG  QTV VSN KD LE
Sbjct: 1   MATITHRSFLNLTAFKSFTAETRRRYERRKLGAKSSVNCSQTLEGSAQTVAVSNGKDSLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEA 107
            CRVLNGMWQTSGGW RI+RD  VEAMLRY D GL TFDMADHY  A
Sbjct: 61  ICRVLNGMWQTSGGWGRIDRDAAVEAMLRYADAGLTTFDMADHYGPA 107

[Close]

BLAST of IVF0004872 vs. NCBI nr
Match: XP_016902264.1 (PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 174 bits (442), Expect = 1.72e-49
Identity = 85/107 (79.44%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MEAITHRSFSNLTSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLE 60
           M  ITHRSF NLT+FKSFTAETRR YERRKLGAKSS+ CSQTLEG  QTV VSN KD LE
Sbjct: 1   MATITHRSFLNLTAFKSFTAETRRRYERRKLGAKSSVNCSQTLEGSAQTVAVSNGKDSLE 60

Query: 61  FCRVLNGMWQTSGGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEA 107
            CRVLNGMWQTSGGW RI+RD  VEAMLRY D GL TFDMADHY  A
Sbjct: 61  ICRVLNGMWQTSGGWGRIDRDAAVEAMLRYADAGLTTFDMADHYGPA 107

[Close]

BLAST of IVF0004872 vs. TAIR 10
Match: AT2G27680.1 (NAD(P)-linked oxidoreductase superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 13  TSFKSFTAETRRHYERRKLGAKSSIKCSQTLEGFTQTVMVSNSKDLLEFCRVLNGMWQTS 72
           T+  +  +   R+  RR+    +S+ CS  +    ++V + N  D LE CRVLNGMWQTS
Sbjct: 11  TNLATTLSSNYRNVSRRRT-ISTSVNCSVEITEADRSVKLKNGNDSLEICRVLNGMWQTS 70

Query: 73  GGWRRINRDTTVEAMLRYVDIGLITFDMADHYSEA 108
           GGW +I+R+  V++MLRY D GL TFDMADHY  A
Sbjct: 71  GGWGKIDRNDAVDSMLRYADAGLSTFDMADHYGPA 104

The following BLAST results are available for this feature:

BLAST of IVF0004872 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFB8	3.1e-56	100.00	Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7U6H2	5.8e-55	98.21	Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UQB5	2.5e-42	80.00	Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E206	3.1e-40	79.44	flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A1S3C7R4	3.1e-40	79.44	flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]

BLAST of IVF0004872 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22233.1	2.59e-73	100.00	flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa]	[more]
KAA0051412.1	1.22e-71	98.21	flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa]	[more]
KAA0057300.1	9.54e-56	80.00	flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa]	[more]
XP_008458596.1	1.43e-49	79.44	PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo]	[more]
XP_016902264.1	1.72e-49	79.44	PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo]	[more]

BLAST of IVF0004872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27680.1	1.3e-19	47.37	NAD(P)-linked oxidoreductase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43147	PROTEIN TAS	coord: 19..107
None	No IPR available	PANTHER	PTHR43147:SF1	OS09G0567350 PROTEIN	coord: 19..107
IPR036812	NADP-dependent oxidoreductase domain superfamily	SUPERFAMILY	51430	NAD(P)-linked oxidoreductase	coord: 62..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004872.2	IVF0004872.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0047834	D-threo-aldose 1-dehydrogenase activity