IVF0004854 (gene) Melon (IVF77) v1

Overview


Name	IVF0004854
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr03: 27079560 .. 27080222 (+)
RNA-Seq Expression	IVF0004854
Synteny	IVF0004854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATAGTTTTCTCCTCAGTGGTGGATATTATGAGTAGTTGCATTTCAGTTAGAGGTTTGCGTCTGAGTGGTAAATGGTTTATCTTTTCGTTGCCGTCATGGACAGTTCAGTTATGTATTTGATTTGGAAGATACCACAAACTGTAGCTATTTATTTTTTGATTTTGTTAATGCAACGTATTCTTATTCTTTCTTATTTCCATCACTGTGCAAATATTAGCTGGACGGACAAAATTTGTGGCACCAATTTATTCTCGGCTGGATTTGCAGGTTTCCCCGGCTGAGACAGAATGTTTCCTCAATGGCGTTGCATTGGAGGGTCTGTTGTCATTGGTGGTTCAGGAAGCCAATGGTGAGCAGCGTCATTGTGTATAAAATAAAAGAGAAATACATTCAACATTTACCTGAATTTTTGATTGCGCCCTTCCCCTTTTACTTTGCAGAGGACCATGTACAGCAAGAACCAGTTAAAAGAAAAACGATGGATCTAATATTGTAGAATTGGGACACCAAATACAAGTGATCTTTGGTCGAGGTATCAGCCATGGGTTCAAGCTCCAATCGAAAGCTAGAAGCATCATTTGCAATTTGTCATCACTAAGTCTGAATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTACAGCTGA

mRNA sequence

ATGAACATAGTTTTCTCCTCAGTGGTGGATATTATGAGTAGTTGCATTTCAGTTAGAGGTTTGCGTCTGAGTGGTAAATGGTTTATCTTTTCGTTGCCGTCATGGACAGTTCAGTTATCTGGACGGACAAAATTTGTGGCACCAATTTATTCTCGGCTGGATTTGCAGGTTTCCCCGGCTGAGACAGAATGTTTCCTCAATGGCGTTGCATTGGAGGGTCTGTTGTCATTGGTGGTTCAGGAAGCCAATGGTGAGCAGCGTCATTGTAAAAACGATGGATCTAATATTGTAGAATTGGGACACCAAATACAAGTGATCTTTGGTCGAGGTATCAGCCATGGGTTCAAGCTCCAATCGAAAGCTAGAAGCATCATTTGCAATTTGTCATCACTAAGTCTGAATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTACAGCTGA

Coding sequence (CDS)

ATGAACATAGTTTTCTCCTCAGTGGTGGATATTATGAGTAGTTGCATTTCAGTTAGAGGTTTGCGTCTGAGTGGTAAATGGTTTATCTTTTCGTTGCCGTCATGGACAGTTCAGTTATCTGGACGGACAAAATTTGTGGCACCAATTTATTCTCGGCTGGATTTGCAGGTTTCCCCGGCTGAGACAGAATGTTTCCTCAATGGCGTTGCATTGGAGGGTCTGTTGTCATTGGTGGTTCAGGAAGCCAATGGTGAGCAGCGTCATTGTAAAAACGATGGATCTAATATTGTAGAATTGGGACACCAAATACAAGTGATCTTTGGTCGAGGTATCAGCCATGGGTTCAAGCTCCAATCGAAAGCTAGAAGCATCATTTGCAATTTGTCATCACTAAGTCTGAATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTACAGCTGA

Protein sequence

MNIVFSSVVDIMSSCISVRGLRLSGKWFIFSLPSWTVQLSGRTKFVAPIYSRLDLQVSPAETECFLNGVALEGLLSLVVQEANGEQRHCKNDGSNIVELGHQIQVIFGRGISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAATYS

Homology

[Close]

BLAST of IVF0004854 vs. ExPASy TrEMBL
Match: A0A0A0LKG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348800 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 104/147 (70.75%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 8   VVDIMSSCISVRGLRLSGKWFIFSLPSWTVQLSGRTKFVAPIYSRLDLQVSPAETECFLN 67
           ++DIMSSCISVRG  L GKWFIF +     + + RTKFVAPI S+LDLQV PAETE FLN
Sbjct: 1   MLDIMSSCISVRG--LCGKWFIFFVVVMD-RSTRRTKFVAPIDSQLDLQVPPAETERFLN 60

Query: 68  GVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGHQIQVIFGRGISHGFKLQSKA 127
           G+AL+G LSLVVQEANG           KNDGSNI ELGHQI VIF RGI HGF +Q KA
Sbjct: 61  GLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRGICHGFNVQFKA 120

Query: 128 RSIICNLSSLSLNTLGFLSTVQVTAAT 149
           RSIICNLSSL L+TLGFLSTVQVTAAT
Sbjct: 121 RSIICNLSSLGLDTLGFLSTVQVTAAT 144

[Close]

BLAST of IVF0004854 vs. ExPASy TrEMBL
Match: A0A5A7UYN5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002230 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 51  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN 84
           S LDL +VSPAETECFLNGVALEGLLSLVVQEAN
Sbjct: 672 SFLDLWKVSPAETECFLNGVALEGLLSLVVQEAN 705

[Close]

BLAST of IVF0004854 vs. NCBI nr
Match: KAE8652037.1 (hypothetical protein Csa_018665, partial [Cucumis sativus])

HSP 1 Score: 130 bits (328), Expect = 2.56e-36
Identity = 73/98 (74.49%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 57  VSPAETECFLNGVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGHQIQVIFGRG 116
           V PAETE FLNG+AL+G LSLVVQEANG           KNDGSNI ELGHQI VIF RG
Sbjct: 1   VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG 60

Query: 117 ISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAAT 148
           I HGF +Q KARSIICNLSSL L+TLGFLSTVQVTAAT
Sbjct: 61  ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT 98

[Close]

BLAST of IVF0004854 vs. NCBI nr
Match: KAA0061083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.92e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 51  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN 83
           S LDL +VSPAETECFLNGVALEGLLSLVVQEAN
Sbjct: 672 SFLDLWKVSPAETECFLNGVALEGLLSLVVQEAN 705

The following BLAST results are available for this feature:

BLAST of IVF0004854 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKG0	1.1e-41	70.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348800 PE=4 SV=1	[more]
A0A5A7UYN5	4.6e-05	91.18	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of IVF0004854 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652037.1	2.56e-36	74.49	hypothetical protein Csa_018665, partial [Cucumis sativus]	[more]
KAA0061083.1	2.92e-06	91.18	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004854 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004854.1	IVF0004854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane