IVF0004829 (gene) Melon (IVF77) v1

Overview
NameIVF0004829
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr02: 14376136 .. 14376360 (-)
RNA-Seq ExpressionIVF0004829
SyntenyIVF0004829
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTCCCGACGCAGGCTATGCCGACGCTTAGTAGGCGTCGGGAGAGGCTTTCCCGACGCCGCGTTGGTATGGCGTCGGGAAAGCCTCTCCCGACGCATTTCTCCCGACGTTCTTCCCGACGCCGTTTTGTACGTCGGGAAAGGTTATTCCGACGTACTTTTCATTTTCGCCGACGTTTTTGGCGTCGGGAGTACCCCCGTCTCTTGTAGTGATTGTTAA

mRNA sequence

ATGCCTCTTTCCCGACGCAGGCTATGCCGACGCTTAGTAGGCGTCGGGAGAGGCTTTCCCGACGCCGCGTTGGTATGGCGTCGGGAAAGCCTCTCCCGACGCATTTCTCCCGACGTTCTTCCCGACGCCGTTTTGTACGTCGGGAAAGGTTATTCCGACGTACTTTTCATTTTCGCCGACGTTTTTGGCGTCGGGAGTACCCCCGTCTCTTGTAGTGATTGTTAA

Coding sequence (CDS)

ATGCCTCTTTCCCGACGCAGGCTATGCCGACGCTTAGTAGGCGTCGGGAGAGGCTTTCCCGACGCCGCGTTGGTATGGCGTCGGGAAAGCCTCTCCCGACGCATTTCTCCCGACGTTCTTCCCGACGCCGTTTTGTACGTCGGGAAAGGTTATTCCGACGTACTTTTCATTTTCGCCGACGTTTTTGGCGTCGGGAGTACCCCCGTCTCTTGTAGTGATTGTTAA

Protein sequence

MPLSRRRLCRRLVGVGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVFGVGSTPVSCSDC
Homology
BLAST of IVF0004829 vs. ExPASy TrEMBL
Match: A0A5D3CRC0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00660 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 43/59 (72.88%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 4   SRRRLCRRLVGVGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVF 63
           SRRR      GVG+GFPDA LV RRESLSRRISPDVLPD VL+VG  + DVL IFADVF
Sbjct: 123 SRRRHADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADVF 181

BLAST of IVF0004829 vs. ExPASy TrEMBL
Match: A0A5D3BQN2 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001040 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 15  VGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVFGVGSTPVSCS 73
           VGRG P+A LV     +S+R+S DV  DAV  VGK Y DV   F DVF    +P+SCS
Sbjct: 116 VGRGIPNAMLVMHGGFISQRVSFDVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCS 173

BLAST of IVF0004829 vs. ExPASy TrEMBL
Match: A0A5D3DGV6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00040 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.6e-04
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 15  VGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDV-LFIFADVFGVGSTPVSCSD 74
           V R  P+A LV RRE +SRR+S DV PDAV  VGK Y DV L  F  V    S+P  CS+
Sbjct: 115 VERDIPNAVLVMRREFVSRRVSSDVCPDAVNDVGKRYPDVFLASFDIVMRRESSPXFCSE 174

BLAST of IVF0004829 vs. ExPASy TrEMBL
Match: A0A5D3DDA9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00450 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 34  RISPDVLPDAVLYVGKGYSDVLFIFADVF 63
           + S DVLPDA+LYVGKGY DVLFIFADVF
Sbjct: 536 KASLDVLPDAILYVGKGYPDVLFIFADVF 564

BLAST of IVF0004829 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.75e-17
Identity = 43/59 (72.88%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 4   SRRRLCRRLVGVGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVF 62
           SRRR      GVG+GFPDA LV RRESLSRRISPDVLPD VL+VG  + DVL IFADVF
Sbjct: 123 SRRRHADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADVF 181

BLAST of IVF0004829 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.74e-06
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 15  VGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVFGVGSTPVSCS 72
           VGRG P+A LV     +S+R+S DV  DAV  VGK Y DV   F DVF    +P+SCS
Sbjct: 116 VGRGIPNAMLVMHGGFISQRVSFDVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCS 173

BLAST of IVF0004829 vs. NCBI nr
Match: TYK22927.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 5.68e-06
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 15  VGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFAD-VFGVGSTPVSCSD 73
           V R  P+A LV RRE +SRR+S DV PDAV  VGK Y DV     D V    S+P  CS+
Sbjct: 115 VERDIPNAVLVMRREFVSRRVSSDVCPDAVNDVGKRYPDVFLASFDIVMRRESSPXFCSE 174

BLAST of IVF0004829 vs. NCBI nr
Match: TYK21553.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 9.40e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 34  RISPDVLPDAVLYVGKGYSDVLFIFADVF 62
           + S DVLPDA+LYVGKGY DVLFIFADVF
Sbjct: 536 KASLDVLPDAILYVGKGYPDVLFIFADVF 564

BLAST of IVF0004829 vs. NCBI nr
Match: KAA0036659.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.48e-05
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 15  VGRGFPDAALVWRRESLSRRISPDVLPDAVLYVGKGYSDVLFIFADVFGVGSTPVSCS 72
           VGRG P+A LV     +S+R+S DV  DAV  VGK Y DV     DVF    +P+SCS
Sbjct: 116 VGRGIPNAMLVMHGGFISQRVSFDVYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCS 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CRC06.6e-1372.88CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BQN21.9e-0451.72Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DGV65.6e-0453.33NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DDA99.6e-0482.76CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
TYK14413.12.75e-1772.88CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK01082.11.74e-0651.72zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
TYK22927.15.68e-0651.67NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK21553.19.40e-0682.76CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0036659.12.48e-0550.00zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004829.1IVF0004829.1mRNA