IVF0004826 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE Homology
BLAST of IVF0004826 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.6e-08 Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 0
BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 5.1e-37 Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3DXZ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00130 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33 Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 5.4e-31 Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0
BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23 Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of IVF0004826 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 196 bits (498), Expect = 4.17e-63 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of IVF0004826 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 164 bits (416), Expect = 5.03e-50 Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of IVF0004826 vs. NCBI nr
Match: TYK28110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 152 bits (383), Expect = 1.45e-45 Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of IVF0004826 vs. NCBI nr
Match: KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 145 bits (365), Expect = 5.79e-43 Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0
BLAST of IVF0004826 vs. NCBI nr
Match: KAA0049584.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15944.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 118 bits (295), Expect = 2.28e-32 Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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