IVF0004826 (gene) Melon (IVF77) v1

Overview
NameIVF0004826
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr02: 10873044 .. 10873340 (+)
RNA-Seq ExpressionIVF0004826
SyntenyIVF0004826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG

mRNA sequence

ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG

Coding sequence (CDS)

ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAGAGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG

Protein sequence

MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
Homology
BLAST of IVF0004826 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-08
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 1   MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
           M  E+   ++  A  AI L+LSD+V+  +I E+T  G+W +LE LY SK L N+ Y++++
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 99
                M +  + + +L  F  L      L  KI +E++
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDK 144

BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 99
          FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98

BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.1e-37
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MT EEKETMEN  YGAIVLNLSDNVL+EVI E+TTYGMWKKLEELYQSKDLPNRAY+RER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG 95
          F T+KMD NKSL ENLGEFKKLS DFREL DKIG
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRELGDKIG 94

BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3DXZ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00130 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 9  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDD 68
          MEN  YGAIVLNLSDNVL+EVIGEETTYGMWKKLEELYQ KDLPNRA++RERF T+KMDD
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NKSLIENLGEFKKLSLDFRELKDKIGDE 97
          NK +IENL EFKKLS +F+EL+DKIGDE
Sbjct: 61 NKLVIENLEEFKKLSSEFKELRDKIGDE 88

BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-31
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MTQE+KETME  AYGAIVLNLSDNV++EVI EE  YGMWKKL+ELYQSKDL N AY+RER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFR 88
          F T+KMDDN SLIENLGEFKKLS DF+
Sbjct: 61 FFTFKMDDNNSLIENLGEFKKLSSDFK 87

BLAST of IVF0004826 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 1   MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
           +T+E+ E ME+  YG IVL LSDNVL E+I +ETTY +W KLEE+Y ++DL NRAY+ E+
Sbjct: 36  VTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEK 95

Query: 61  FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 99
           F TY MD N+SL + L EFKKLS +F+ L D+I +ENE
Sbjct: 96  FFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENE 133

BLAST of IVF0004826 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 4.17e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98
          FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98

BLAST of IVF0004826 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 5.03e-50
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MT EEKETMEN  YGAIVLNLSDNVL+EVI E+TTYGMWKKLEELYQSKDLPNRAY+RER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG 94
          F T+KMD NKSL ENLGEFKKLS DFREL DKIG
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRELGDKIG 94

BLAST of IVF0004826 vs. NCBI nr
Match: TYK28110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 1.45e-45
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 9  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDD 68
          MEN  YGAIVLNLSDNVL+EVIGEETTYGMWKKLEELYQ KDLPNRA++RERF T+KMDD
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NKSLIENLGEFKKLSLDFRELKDKIGDE 96
          NK +IENL EFKKLS +F+EL+DKIGDE
Sbjct: 61 NKLVIENLEEFKKLSSEFKELRDKIGDE 88

BLAST of IVF0004826 vs. NCBI nr
Match: KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 5.79e-43
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0

Query: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60
          MTQE+KETME  AYGAIVLNLSDNV++EVI EE  YGMWKKL+ELYQSKDL N AY+RER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 FLTYKMDDNKSLIENLGEFKKLSLDFR 87
          F T+KMDDN SLIENLGEFKKLS DF+
Sbjct: 61 FFTFKMDDNNSLIENLGEFKKLSSDFK 87

BLAST of IVF0004826 vs. NCBI nr
Match: KAA0049584.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15944.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 2.28e-32
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 0

Query: 9  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDD 68
          MEN  YGAIVLNLSD+VL+E IGEE  Y MWKKLEELY+SKDL NRAY RERF T+KMDD
Sbjct: 1  MENAGYGAIVLNLSDSVLREFIGEERAYEMWKKLEELYKSKDLLNRAYGRERFFTFKMDD 60

Query: 69 NKSLIENLGEFKKLSLDFR 87
          NK L  +LGEFK+LS +F+
Sbjct: 61 NKYLTGDLGEFKQLSSNFK 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109781.6e-0832.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3BAU21.2e-46100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7V6Z95.1e-3786.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DXZ12.0e-3382.95Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7V1L85.4e-3180.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BSZ62.5e-2358.16Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G... [more]
Match NameE-valueIdentityDescription
TYJ96960.14.17e-63100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0063883.15.03e-5086.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK28110.11.45e-4582.95Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0059755.15.79e-4380.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0049584.12.28e-3273.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 9..96
e-value: 6.7E-19
score: 68.0
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..96
NoneNo IPR availablePANTHERPTHR34676:SF12ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATEDcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004826.2IVF0004826.2mRNA