IVF0004775 (gene) Melon (IVF77) v1

Overview


Name	IVF0004775
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	SWIM-type domain-containing protein
Location	chr03: 18075266 .. 18075537 (+)
RNA-Seq Expression	IVF0004775
Synteny	IVF0004775

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCTACTTGTTGTCGAACTTCAAATAATGTTATGCCGGTCGATTCCATCCAATCCAACATCCAGATTATTGGCTTGAGTTGTCATTCACCGAAGTTCGCTCAAATGCAGACTTACTTAAAGGACCCGGTCGACCGAGAACAACAAGGATCCATAATGAAATGGATTGGAAAGAGTCTGGTCAATCACTCAGATGCACTATCTGTAAAGTCGAAGGACACAACAGACGTACCTGTCCTCAACGTGCATCTTCTTCTTCAAGACACTAA

mRNA sequence

ATGAATGCTACTTGTTATTATTGGCTTGAGTTGTCATTCACCGAAGTTCGCTCAAATGCAGACTTACTTAAAGGACCCGGTCGACCGAGAACAACAAGGATCCATAATGAAATGGATTGGAAAGAGTCTGGTCAATCACTCAGATGCACTATCTGTAAAGTCGAAGGACACAACAGACGTACCTGTCCTCAACGTGCATCTTCTTCTTCAAGACACTAA

Coding sequence (CDS)

ATGAATGCTACTTGTTATTATTGGCTTGAGTTGTCATTCACCGAAGTTCGCTCAAATGCAGACTTACTTAAAGGACCCGGTCGACCGAGAACAACAAGGATCCATAATGAAATGGATTGGAAAGAGTCTGGTCAATCACTCAGATGCACTATCTGTAAAGTCGAAGGACACAACAGACGTACCTGTCCTCAACGTGCATCTTCTTCTTCAAGACACTAA

Protein sequence

MNATCYYWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRASSSSRH

Homology

[Close]

BLAST of IVF0004775 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.5e-30
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of IVF0004775 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.5e-30
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of IVF0004775 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MNATCYYWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRR 60
          MNAT YYWLE+SFTEVR NADLLK PGRPRTTRI NEMDWKES QSLRCT+ KVEGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRASSSSRH 73
          TCPQRASSSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of IVF0004775 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTE+R NADLLKGPGRPRTTRI NEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 225 SSSSRH 230

[Close]

BLAST of IVF0004775 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.2e-28
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NA+LLKGP RPRTTRIHNEMDWKESGQSLRCTICKVEGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 260 SSSSRH 265

[Close]

BLAST of IVF0004775 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 2.05e-40
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MNATCYYWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRR 60
          MNAT YYWLE+SFTEVR NADLLK PGRPRTTRI NEMDWKES QSLRCT+ KVEGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRASSSSRH 72
          TCPQRASSSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of IVF0004775 vs. NCBI nr
Match: KAA0033661.1 (hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.68e-37
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTE+R NADLLKGPGRPRTTRI NEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 225 SSSSRH 230

[Close]

BLAST of IVF0004775 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 4.08e-36
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of IVF0004775 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 4.08e-36
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of IVF0004775 vs. NCBI nr
Match: KAA0063901.1 (hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK15904.1 hypothetical protein E5676_scaffold94G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 6.55e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 7   YWLELSFTEVRSNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 66
           YW ELSFTEVR NA+LLKGP RPRTTRIHNEMDWKESGQSLRCTICKVEGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 260 SSSSRH 265

The following BLAST results are available for this feature:

BLAST of IVF0004775 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004775 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BS92	7.5e-30	96.97	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TN56	7.5e-30	96.97	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0A0KT57	1.7e-29	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1	[more]
A0A5A7SW50	1.1e-28	93.94	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7VDU8	9.2e-28	92.42	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of IVF0004775 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51592.1	2.05e-40	88.89	hypothetical protein Csa_008873 [Cucumis sativus]	[more]
KAA0033661.1	1.68e-37	93.94	hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa]	[more]
KAA0044308.1	4.08e-36	96.97	uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]	[more]
TYK02543.1	4.08e-36	96.97	uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa]	[more]
KAA0063901.1	6.55e-36	92.42	hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK1590...	[more]

BLAST of IVF0004775 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004775.2	IVF0004775.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding