IVF0004716 (gene) Melon (IVF77) v1

Overview
NameIVF0004716
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr10: 18483494 .. 18483901 (-)
RNA-Seq ExpressionIVF0004716
SyntenyIVF0004716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

mRNA sequence

ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

Coding sequence (CDS)

ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

Protein sequence

MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLAYCNTILHNNP
Homology
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match: A0A5A7UMN4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001920 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query: 1   MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
           MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND
Sbjct: 31  MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 90

Query: 61  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
           LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD
Sbjct: 91  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 150

Query: 121 DIKLAYCNTILHNNP 136
           DIKLAYCNTILHNNP
Sbjct: 151 DIKLAYCNTILHNNP 165

BLAST of IVF0004716 vs. ExPASy TrEMBL
Match: A0A5D3CVP7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00270 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 0

Query: 8   NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
           +Q +N+S EDMMGA+P R +DCR  SSG KRK     + TV+VI + + C NDLLRAI +
Sbjct: 16  SQVLNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75

Query: 68  WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDI 123
           W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++   L I+KAFLDL  D+
Sbjct: 76  WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFADM 130

BLAST of IVF0004716 vs. ExPASy TrEMBL
Match: A0A5A7VE05 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001560 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 0

Query: 8   NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
           +Q +N+S EDMMGA+P R +DCR  SSG KRK     + TV+VI   + C NDLLRAI +
Sbjct: 62  SQVLNMSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121

Query: 68  WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDI 123
           W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++   L I+KAFLDL  D+
Sbjct: 122 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFADM 176

BLAST of IVF0004716 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 0

Query: 1   MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
           ME  +MY+QG+++  +D+MG RP R  + R  SSGSKRK  G  + T+ +I   ++ +ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
            L+AI EWL + R +  A   EV+RQLQ IP+LS  D V+ M +++  +  +KAFLD+ D
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149

Query: 121 DIKLAYCNTILHNN 135
           ++KL YC  I  +N
Sbjct: 150 ELKLDYCTIIFQDN 163

BLAST of IVF0004716 vs. ExPASy TrEMBL
Match: A0A5A7U169 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00580 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 0

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+N+SP+D+MG R  + N+ R  SSGSKRK  G    + +++  AI+  ++ L  I
Sbjct: 1   MYSQGLNMSPDDLMGTRIAQVNERRNVSSGSKRKRAGHAADSGDIVRTAIEYGHEQLNRI 60

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A+W  + R +    R+EV+RQL+ IP+L+++D  + M ++++ +  +KAFLD+SD+IK  
Sbjct: 61  ADWPVLQRQDASQTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVSDNIKYP 120

Query: 126 YCNTILHNN 135
           YC+ IL  N
Sbjct: 121 YCSIILQEN 129

BLAST of IVF0004716 vs. NCBI nr
Match: KAA0056454.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (687), Expect = 2.62e-90
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query: 1   MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
           MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND
Sbjct: 31  MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 90

Query: 61  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
           LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD
Sbjct: 91  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 150

Query: 121 DIKLAYCNTILHNNP 135
           DIKLAYCNTILHNNP
Sbjct: 151 DIKLAYCNTILHNNP 165

BLAST of IVF0004716 vs. NCBI nr
Match: TYK15318.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 3.91e-31
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 8   NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
           +Q +N+S EDMMGA+P R +DCR  SSG KRK     + TV+VI + + C NDLLRAI +
Sbjct: 16  SQVLNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75

Query: 68  WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
           W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++   L I+KAFLDL  D
Sbjct: 76  WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFAD 129

BLAST of IVF0004716 vs. NCBI nr
Match: KAA0066582.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 1.65e-29
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 0

Query: 8   NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
           +Q +N+S EDMMGA+P R +DCR  SSG KRK     + TV+VI   + C NDLLRAI +
Sbjct: 62  SQVLNMSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121

Query: 68  WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
           W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++   L I+KAFLDL  D
Sbjct: 122 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFAD 175

BLAST of IVF0004716 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.71e-28
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 0

Query: 1   MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
           ME  +MY+QG+++  +D+MG RP R  + R  SSGSKRK  G  + T+ +I   ++ +ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
            L+AI EWL + R +  A   EV+RQLQ IP+LS  D V+ M +++  +  +KAFLD+ D
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149

Query: 121 DIKLAYCNTILHNN 134
           ++KL YC  I  +N
Sbjct: 150 ELKLDYCTIIFQDN 163

BLAST of IVF0004716 vs. NCBI nr
Match: KAA0049583.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15943.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 1.94e-26
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 0

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+N+SP+D+MG R  + N+ R  SSGSKRK  G    + +++  AI+  ++ L  I
Sbjct: 1   MYSQGLNMSPDDLMGTRIAQVNERRNVSSGSKRKRAGHAADSGDIVRTAIEYGHEQLNRI 60

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A+W  + R +    R+EV+RQL+ IP+L+++D  + M ++++ +  +KAFLD+SD+IK  
Sbjct: 61  ADWPVLQRQDASQTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVSDNIKYP 120

Query: 126 YCNTILHNN 134
           YC+ IL  N
Sbjct: 121 YCSIILQEN 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMN41.8e-69100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CVP76.8e-2455.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE054.4e-2355.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4693.7e-2243.28Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U1692.7e-2041.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0056454.12.62e-90100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon p... [more]
TYK15318.13.91e-3156.14retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066582.11.65e-2956.14retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060529.12.71e-2843.28retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0049583.11.94e-2641.09retrotransposon protein [Cucumis melo var. makuwa] >TYK15943.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004716.1IVF0004716.1mRNA