Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA
mRNA sequence
ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA
Coding sequence (CDS)
ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA
Protein sequence
MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLAYCNTILHNNP
Homology
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match:
A0A5A7UMN4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001920 PE=4 SV=1)
HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND
Sbjct: 31 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 90
Query: 61 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD
Sbjct: 91 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 150
Query: 121 DIKLAYCNTILHNNP 136
DIKLAYCNTILHNNP
Sbjct: 151 DIKLAYCNTILHNNP 165
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match:
A0A5D3CVP7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00270 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 0
Query: 8 NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
+Q +N+S EDMMGA+P R +DCR SSG KRK + TV+VI + + C NDLLRAI +
Sbjct: 16 SQVLNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75
Query: 68 WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDI 123
W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++ L I+KAFLDL D+
Sbjct: 76 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFADM 130
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match:
A0A5A7VE05 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001560 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 0
Query: 8 NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
+Q +N+S EDMMGA+P R +DCR SSG KRK + TV+VI + C NDLLRAI +
Sbjct: 62 SQVLNMSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121
Query: 68 WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDI 123
W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++ L I+KAFLDL D+
Sbjct: 122 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFADM 176
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 0
Query: 1 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
ME +MY+QG+++ +D+MG RP R + R SSGSKRK G + T+ +I ++ +ND
Sbjct: 30 MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89
Query: 61 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
L+AI EWL + R + A EV+RQLQ IP+LS D V+ M +++ + +KAFLD+ D
Sbjct: 90 RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149
Query: 121 DIKLAYCNTILHNN 135
++KL YC I +N
Sbjct: 150 ELKLDYCTIIFQDN 163
BLAST of IVF0004716 vs. ExPASy TrEMBL
Match:
A0A5A7U169 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00580 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 0
Query: 6 MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
MY+QG+N+SP+D+MG R + N+ R SSGSKRK G + +++ AI+ ++ L I
Sbjct: 1 MYSQGLNMSPDDLMGTRIAQVNERRNVSSGSKRKRAGHAADSGDIVRTAIEYGHEQLNRI 60
Query: 66 AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
A+W + R + R+EV+RQL+ IP+L+++D + M ++++ + +KAFLD+SD+IK
Sbjct: 61 ADWPVLQRQDASQTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVSDNIKYP 120
Query: 126 YCNTILHNN 135
YC+ IL N
Sbjct: 121 YCSIILQEN 129
BLAST of IVF0004716 vs. NCBI nr
Match:
KAA0056454.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 269 bits (687), Expect = 2.62e-90
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND
Sbjct: 31 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 90
Query: 61 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD
Sbjct: 91 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 150
Query: 121 DIKLAYCNTILHNNP 135
DIKLAYCNTILHNNP
Sbjct: 151 DIKLAYCNTILHNNP 165
BLAST of IVF0004716 vs. NCBI nr
Match:
TYK15318.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 118 bits (295), Expect = 3.91e-31
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 0
Query: 8 NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
+Q +N+S EDMMGA+P R +DCR SSG KRK + TV+VI + + C NDLLRAI +
Sbjct: 16 SQVLNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75
Query: 68 WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++ L I+KAFLDL D
Sbjct: 76 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFAD 129
BLAST of IVF0004716 vs. NCBI nr
Match:
KAA0066582.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 115 bits (288), Expect = 1.65e-29
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 0
Query: 8 NQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAE 67
+Q +N+S EDMMGA+P R +DCR SSG KRK + TV+VI + C NDLLRAI +
Sbjct: 62 SQVLNMSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121
Query: 68 WLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
W K+ R EEDA RREVIRQLQ IP+LS LD V+ + ++ L I+KAFLDL D
Sbjct: 122 WPKLARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIAGNLVIMKAFLDLFAD 175
BLAST of IVF0004716 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (279), Expect = 2.71e-28
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 0
Query: 1 MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
ME +MY+QG+++ +D+MG RP R + R SSGSKRK G + T+ +I ++ +ND
Sbjct: 30 MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89
Query: 61 LLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSD 120
L+AI EWL + R + A EV+RQLQ IP+LS D V+ M +++ + +KAFLD+ D
Sbjct: 90 RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149
Query: 121 DIKLAYCNTILHNN 134
++KL YC I +N
Sbjct: 150 ELKLDYCTIIFQDN 163
BLAST of IVF0004716 vs. NCBI nr
Match:
KAA0049583.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15943.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 106 bits (264), Expect = 1.94e-26
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 0
Query: 6 MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
MY+QG+N+SP+D+MG R + N+ R SSGSKRK G + +++ AI+ ++ L I
Sbjct: 1 MYSQGLNMSPDDLMGTRIAQVNERRNVSSGSKRKRAGHAADSGDIVRTAIEYGHEQLNRI 60
Query: 66 AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
A+W + R + R+EV+RQL+ IP+L+++D + M ++++ + +KAFLD+SD+IK
Sbjct: 61 ADWPVLQRQDASQTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVSDNIKYP 120
Query: 126 YCNTILHNN 134
YC+ IL N
Sbjct: 121 YCSIILQEN 129
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UMN4 | 1.8e-69 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CVP7 | 6.8e-24 | 55.65 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VE05 | 4.4e-23 | 55.65 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7V469 | 3.7e-22 | 43.28 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U169 | 2.7e-20 | 41.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0056454.1 | 2.62e-90 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon p... | [more] |
TYK15318.1 | 3.91e-31 | 56.14 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0066582.1 | 1.65e-29 | 56.14 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0060529.1 | 2.71e-28 | 43.28 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
KAA0049583.1 | 1.94e-26 | 41.09 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15943.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |