IVF0004706 (gene) Melon (IVF77) v1

Overview


Name	IVF0004706
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 9044448 .. 9044636 (-)
RNA-Seq Expression	IVF0004706
Synteny	IVF0004706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAAATGACTTAAATAAAGAATTGAAAACTAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAAAGAAAAGAAGAAAGATGAAATCATAGGAGAAGACGGGGAAGACGAAATAAGAGGAGGAAGTCGAATCGTGAGGAAGAAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAA

mRNA sequence

ATGGAAAGATTAAATGACTTAAATAAAGAATTGAAAACTAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAAAGAAAAGAAGAAAGATGAAATCATAGGAGAAGACGGGGAAGACGAAATAAGAGGAGGAAGTCGAATCGTGAGGAAGAAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAA

Coding sequence (CDS)

ATGGAAAGATTAAATGACTTAAATAAAGAATTGAAAACTAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAAAGAAAAGAAGAAAGATGAAATCATAGGAGAAGACGGGGAAGACGAAATAAGAGGAGGAAGTCGAATCGTGAGGAAGAAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAA

Protein sequence

MERLNDLNKELKTKKDDGKKLQKRKKEKKKDEIIGEDGEDEIRGGSRIVRKKRKMEGQIWNI

Homology

[Close]

BLAST of IVF0004706 vs. ExPASy TrEMBL
Match: A0A5A7SVQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00530 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 22 QKRKKEKKKDEIIGEDGEDEIRGGSRIVRKKRKMEGQIWNI 63
          +K++KE KKDEI GEDG+DEI GG RI RK RKMEGQ WNI
Sbjct: 6  RKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0004706 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.15e-09
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 23 KRKKEKKKDEIIGEDGEDEIRGGSRIVRKKRKMEGQIWNI 62
          K++KE KKDEI GEDG+DEI GG RI RK RKMEGQ WNI
Sbjct: 7  KKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

The following BLAST results are available for this feature:

BLAST of IVF0004706 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVQ8	1.7e-06	73.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0004706 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	5.15e-09	75.00	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004706 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004706.1	IVF0004706.1	mRNA