IVF0004695 (gene) Melon (IVF77) v1

Overview


Name	IVF0004695
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr06: 5443984 .. 5444289 (+)
RNA-Seq Expression	IVF0004695
Synteny	IVF0004695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGGAGCATACCAGGAGTGTTGGTTGAAGTCCTCAGAGTACGAGCCCCAAAGATCGAACGACTTAGGACCAATACGAAGCAAAGGGAAGAAACCGTTGGGGACTGCTTTTTACCCAGGTCGAGAAATCTGAATCTGGGACATTCTCGCTCGCATTTTCTTAAGATGAATGCTGGAAGTCCTCGAGCTCAGCCTATTTCCTTTGCAGCTAGTGCGTTTCCAGTAGTTTCTGACATTGGACGAGCGTTCGCCACTCGTTGGATGCATTGGCCATCTTTTGGACCGTTTTGGGTCGCACCTTAG

mRNA sequence

ATGTCAAGGAGCATACCAGGAGTGTTGGTTGAAGTCCTCAGAGTACGAGCCCCAAAGATCGAACGACTTAGGACCAATACGAAGCAAAGGGAAGAAACCGTTGGGGACTGCTTTTTACCCAGGTCGAGAAATCTGAATCTGGGACATTCTCGCTCGCATTTTCTTAAGATGAATGCTGGAAGTCCTCGAGCTCAGCCTATTTCCTTTGCAGCTAGTGCGTTTCCAGTAGTTTCTGACATTGGACGAGCGTTCGCCACTCGTTGGATGCATTGGCCATCTTTTGGACCGTTTTGGGTCGCACCTTAG

Coding sequence (CDS)

ATGTCAAGGAGCATACCAGGAGTGTTGGTTGAAGTCCTCAGAGTACGAGCCCCAAAGATCGAACGACTTAGGACCAATACGAAGCAAAGGGAAGAAACCGTTGGGGACTGCTTTTTACCCAGGTCGAGAAATCTGAATCTGGGACATTCTCGCTCGCATTTTCTTAAGATGAATGCTGGAAGTCCTCGAGCTCAGCCTATTTCCTTTGCAGCTAGTGCGTTTCCAGTAGTTTCTGACATTGGACGAGCGTTCGCCACTCGTTGGATGCATTGGCCATCTTTTGGACCGTTTTGGGTCGCACCTTAG

Protein sequence

MSRSIPGVLVEVLRVRAPKIERLRTNTKQREETVGDCFLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPFWVAP

Homology

[Close]

BLAST of IVF0004695 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.1e-18
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 38  FLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPF 97
           F  R+R L+  HSRSHFL  +  SPRA P+SFAASAF VVSD GRAFA+RW HWPSFGPF
Sbjct: 24  FYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFASRWKHWPSFGPF 83

Query: 98  WVAP 102
           WVAP
Sbjct: 84  WVAP 87

[Close]

BLAST of IVF0004695 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 38  FLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPF 97
           F  R+R L+  HSRSHFL  +  SPRA P+SFAASAF VVSD GRAF +RW HWPSFGPF
Sbjct: 24  FYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFTSRWKHWPSFGPF 83

Query: 98  WVAP 102
           WVAP
Sbjct: 84  WVAP 87

[Close]

BLAST of IVF0004695 vs. ExPASy TrEMBL
Match: A0A5A7VJF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00010 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 41  RSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPFWVA 100
           ++R L+ GHSRS FL  + GSPRAQP+SFAASAFPVVSD GRAFATRW   PSFGPFWVA
Sbjct: 14  KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

Query: 101 P 102
           P
Sbjct: 74  P 74

[Close]

BLAST of IVF0004695 vs. ExPASy TrEMBL
Match: A0A5A7SY75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001800 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 5  IPGVLVEVLRVRAPKIERLRTNTKQREETVGDCFLPRSRNLNLG 49
          +PGV VEVL V+APKIERL  NTKQREETVG   LP+   +  G
Sbjct: 1  MPGVWVEVLEVKAPKIERLMINTKQREETVGGSILPKDEKIEFG 44

[Close]

BLAST of IVF0004695 vs. ExPASy TrEMBL
Match: A0A5A7TUM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00010 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 10  VEVLRVRAPKIERLRTNTKQREETVGDCFLPRSRNLNLGHSRSHFLKMNAGSPRAQPISF 69
           +++  VR     ++R+  K+  ET    F PR R L  GHSRS FL  + GSPRA+P+SF
Sbjct: 163 IDLSLVRKVGSLQIRSKGKKPRET---AFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSF 222

Query: 70  AASAFPVV 78
           AASAF VV
Sbjct: 223 AASAFSVV 227

[Close]

BLAST of IVF0004695 vs. NCBI nr
Match: KAA0065855.1 (hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.77e-23
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 41  RSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPFWVA 100
           ++R L+ GHSRS FL  + GSPRAQP+SFAASAFPVVSD GRAFATRW   PSFGPFWVA
Sbjct: 14  KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

[Close]

BLAST of IVF0004695 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 4.57e-22
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 38  FLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPF 97
           F  R+R L+  HSRSHFL  +  SPRA P+SFAASAF VVSD GRAFA+RW HWPSFGPF
Sbjct: 24  FYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFASRWKHWPSFGPF 83

Query: 98  WVAP 101
           WVAP
Sbjct: 84  WVAP 87

[Close]

BLAST of IVF0004695 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.15e-21
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 38  FLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVVSDIGRAFATRWMHWPSFGPF 97
           F  R+R L+  HSRSHFL  +  SPRA P+SFAASAF VVSD GRAF +RW HWPSFGPF
Sbjct: 24  FYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFTSRWKHWPSFGPF 83

Query: 98  WVAP 101
           WVAP
Sbjct: 84  WVAP 87

[Close]

BLAST of IVF0004695 vs. NCBI nr
Match: KAA0032047.1 (hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.39e-07
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 5  IPGVLVEVLRVRAPKIERLRTNTKQREETVG-DCFLPRSRNL 45
          +PGV VEVLRVRAPKIERL +NTKQREETVG   F P   NL
Sbjct: 1  MPGVWVEVLRVRAPKIERLMSNTKQREETVGGSLFTPGRENL 42

[Close]

BLAST of IVF0004695 vs. NCBI nr
Match: KAA0046850.1 (hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.37e-07
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 22  RLRTNTKQREETVGDCFLPRSRNLNLGHSRSHFLKMNAGSPRAQPISFAASAFPVV 77
           ++R+  K+  ET    F PR R L  GHSRS FL  + GSPRA+P+SFAASAF VV
Sbjct: 175 QIRSKGKKPRETA---FYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

The following BLAST results are available for this feature:

BLAST of IVF0004695 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ75	7.1e-18	71.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5Z6	2.1e-17	70.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJF7	3.5e-17	75.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SY75	2.4e-05	63.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5A7TUM9	3.1e-05	48.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0004695 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065855.1	3.77e-23	75.41	hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa]	[more]
TYK01208.1	4.57e-22	71.88	uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]	[more]
KAA0062674.1	2.15e-21	70.31	uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]	[more]
KAA0032047.1	1.39e-07	73.81	hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa]	[more]
KAA0046850.1	2.37e-07	55.36	hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004695 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004695.1	IVF0004695.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity