IVF0004676 (gene) Melon (IVF77) v1

Overview
NameIVF0004676
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionConserved oligomeric Golgi complex subunit 6
Locationchr07: 6325055 .. 6325216 (+)
RNA-Seq ExpressionIVF0004676
SyntenyIVF0004676
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA

mRNA sequence

ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA

Coding sequence (CDS)

ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA

Protein sequence

MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI
Homology
BLAST of IVF0004676 vs. ExPASy Swiss-Prot
Match: Q6NMI3 (Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=COG6 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-04
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDK 44
           EAC++VA+++AEAYE+IY  + D  N Y DP +  A   PD+
Sbjct: 633 EACVRVAKTLAEAYEVIYQAVTDQQNGYPDPKSL-ARHPPDQ 673

BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A5A7UFH5 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00250 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 54
           MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI
Sbjct: 61  MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 113

BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A0A0L353 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358740 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 2  EACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 54
          EAC+QVARS++EA +LIY+TIMDPNNRY DPT CKAS KPDK DFGNITIEI
Sbjct: 45 EACVQVARSLSEADKLIYNTIMDPNNRYPDPTACKASSKPDKKDFGNITIEI 96

BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A5A7UEV6 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00300 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDP 33
           EACIQVARS+AEAYELIYD IMDPNN Y DP
Sbjct: 647 EACIQVARSLAEAYELIYDAIMDPNNGYPDP 677

BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A0A0L1U3 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358700 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDP 33
           EACIQVARS+AEAYELIYD IMDPNN Y DP
Sbjct: 647 EACIQVARSLAEAYELIYDAIMDPNNGYPDP 677

BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A2P5DEB1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_254050 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 2  EACIQVARSVAEAYELIYDTIMDPNNRYSDP-TTCKASFKPDKNDFGNI 50
          EA +QVARS+AEAYELIY+ IMD  N Y +P  T +AS  PDK+ FGNI
Sbjct: 50 EAPVQVARSLAEAYELIYEDIMDRKNGYPEPQATGQASSAPDKDHFGNI 98

BLAST of IVF0004676 vs. NCBI nr
Match: KAA0052229.1 (conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK01793.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 3.51e-30
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 53
           MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI
Sbjct: 61  MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 113

BLAST of IVF0004676 vs. NCBI nr
Match: KAE8649614.1 (hypothetical protein Csa_012223 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.91e-21
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI 53
           EAC+QVARS++EA +LIY+TIMDPNNRY DPT CKAS KPDK DFGNITIEI
Sbjct: 110 EACVQVARSLSEADKLIYNTIMDPNNRYPDPTACKASSKPDKKDFGNITIEI 161

BLAST of IVF0004676 vs. NCBI nr
Match: PON71609.1 (hypothetical protein TorRG33x02_254050 [Trema orientale])

HSP 1 Score: 58.2 bits (139), Expect = 3.35e-09
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 2  EACIQVARSVAEAYELIYDTIMDPNNRYSDP-TTCKASFKPDKNDFGNI 49
          EA +QVARS+AEAYELIY+ IMD  N Y +P  T +AS  PDK+ FGNI
Sbjct: 50 EAPVQVARSLAEAYELIYEDIMDRKNGYPEPQATGQASSAPDKDHFGNI 98

BLAST of IVF0004676 vs. NCBI nr
Match: XP_004142643.1 (conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypothetical protein Csa_012197 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.93e-08
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDP 32
           EACIQVARS+AEAYELIYD IMDPNN Y DP
Sbjct: 647 EACIQVARSLAEAYELIYDAIMDPNNGYPDP 677

BLAST of IVF0004676 vs. NCBI nr
Match: XP_008444218.2 (PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo] >KAA0052235.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK01798.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.93e-08
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDP 32
           EACIQVARS+AEAYELIYD IMDPNN Y DP
Sbjct: 647 EACIQVARSLAEAYELIYDAIMDPNNGYPDP 677

BLAST of IVF0004676 vs. TAIR 10
Match: AT1G31780.1 (CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 3.6e-05
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 2   EACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDK 44
           EAC++VA+++AEAYE+IY  + D  N Y DP +  A   PD+
Sbjct: 633 EACVRVAKTLAEAYEVIYQAVTDQQNGYPDPKSL-ARHPPDQ 673

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NMI35.0e-0447.62Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Match NameE-valueIdentityDescription
A0A5A7UFH55.6e-22100.00Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0L3531.3e-1580.77Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4... [more]
A0A5A7UEV67.3e-0687.10Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0L1U37.3e-0687.10Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4... [more]
A0A2P5DEB17.3e-0663.27Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_254050 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAA0052229.13.51e-30100.00conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK0179... [more]
KAE8649614.12.91e-2180.77hypothetical protein Csa_012223 [Cucumis sativus][more]
PON71609.13.35e-0963.27hypothetical protein TorRG33x02_254050 [Trema orientale][more]
XP_004142643.11.93e-0887.10conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypot... [more]
XP_008444218.21.93e-0887.10PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo] >KAA00522... [more]
Match NameE-valueIdentityDescription
AT1G31780.13.6e-0547.62CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR01049... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004676.1IVF0004676.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0015031 protein transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0017119 Golgi transport complex