IVF0004676 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA ATGGAAGCCTGTATTCAAGTGGCTCGATCAGTGGCTGAAGCTTACGAACTTATATACGACACAATCATGGATCCAAACAACAGGTACTCAGACCCTACTACTTGCAAGGCATCCTTCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTGA MEACIQVARSVAEAYELIYDTIMDPNNRYSDPTTCKASFKPDKNDFGNITIEI Homology
BLAST of IVF0004676 vs. ExPASy Swiss-Prot
Match: Q6NMI3 (Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=COG6 PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 5.0e-04 Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0
BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A5A7UFH5 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00250 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 5.6e-22 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A0A0L353 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358740 PE=3 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15 Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0
BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A5A7UEV6 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00300 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06 Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A0A0L1U3 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358700 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06 Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of IVF0004676 vs. ExPASy TrEMBL
Match: A0A2P5DEB1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_254050 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
BLAST of IVF0004676 vs. NCBI nr
Match: KAA0052229.1 (conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK01793.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa]) HSP 1 Score: 111 bits (278), Expect = 3.51e-30 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of IVF0004676 vs. NCBI nr
Match: KAE8649614.1 (hypothetical protein Csa_012223 [Cucumis sativus]) HSP 1 Score: 90.5 bits (223), Expect = 2.91e-21 Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0
BLAST of IVF0004676 vs. NCBI nr
Match: PON71609.1 (hypothetical protein TorRG33x02_254050 [Trema orientale]) HSP 1 Score: 58.2 bits (139), Expect = 3.35e-09 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
BLAST of IVF0004676 vs. NCBI nr
Match: XP_004142643.1 (conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypothetical protein Csa_012197 [Cucumis sativus]) HSP 1 Score: 59.3 bits (142), Expect = 1.93e-08 Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of IVF0004676 vs. NCBI nr
Match: XP_008444218.2 (PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo] >KAA0052235.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK01798.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa]) HSP 1 Score: 59.3 bits (142), Expect = 1.93e-08 Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of IVF0004676 vs. TAIR 10
Match: AT1G31780.1 (CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 3.6e-05 Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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