IVF0004646 (gene) Melon (IVF77) v1

Overview
NameIVF0004646
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr01: 25485089 .. 25485532 (+)
RNA-Seq ExpressionIVF0004646
SyntenyIVF0004646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGTGCATCGGGAACAACATCGGGAATAAGGGATTTTTCCAACGCACTATTGTGGGTCGAAAAAAACCATTTAGTGAGCGTCGGGAATACCCTTATTCCCGACGCCGTAAAAGGGATCTTCCGACGCTTTCGTGCGGTGTCGGCAAATCCCCTTTATAAACGTTTCAATTCTATTTTACATAGAATTAAAAAGAAAGGGAAAGAGAGAAGAGAGAAACGAAGATTCGTCACCATCCGTAGCTCGCCATCGTCCGTTTCGTCGTCGTTGCCGGCCCTCACTGCCGTTTGCCACCTTAGGTAAGTTTAAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTAGGGTTTCTTTTAAGAAAATTGTTTTAGAATTTTGTTTTGGAATAGATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTGTAATTTGTGGTTGA

mRNA sequence

ATGCATAGTGCATCGGGAACAACATCGGGAATAAGGGATTTTTCCAACGCACTATTGTGGGTCGAAAAAAACCATTTAGTGAGCGTCGGGAATACCCTTATTCCCGACGCCGTAAAAGGGATCTTCCGACGCTTTCGTGCGGTGTCGGCAAATCCCCTTTATAAACGTTTCAATTCTATTTTACATAGAATTAAAAAGAAAGGGAAAGAGAGAAGAGAGAAACGAAGATTCGTCACCATCCGTAGCTCGCCATCGTCCGTTTCGTCGTCGTTGCCGGCCCTCACTGCCGTTTGCCACCTTAGAATGTGTGTAATTTGTGGTTGA

Coding sequence (CDS)

ATGCATAGTGCATCGGGAACAACATCGGGAATAAGGGATTTTTCCAACGCACTATTGTGGGTCGAAAAAAACCATTTAGTGAGCGTCGGGAATACCCTTATTCCCGACGCCGTAAAAGGGATCTTCCGACGCTTTCGTGCGGTGTCGGCAAATCCCCTTTATAAACGTTTCAATTCTATTTTACATAGAATTAAAAAGAAAGGGAAAGAGAGAAGAGAGAAACGAAGATTCGTCACCATCCGTAGCTCGCCATCGTCCGTTTCGTCGTCGTTGCCGGCCCTCACTGCCGTTTGCCACCTTAGAATGTGTGTAATTTGTGGTTGA

Protein sequence

MHSASGTTSGIRDFSNALLWVEKNHLVSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSSVSSSLPALTAVCHLRMCVICG
Homology
BLAST of IVF0004646 vs. ExPASy TrEMBL
Match: A0A5D3CU45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002450 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 27  VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
           +SV NTLI DA+KGI  RFRA S + LYKRF+S+L+R + + + RREKRRFV +RSSPSS
Sbjct: 1   MSVENTLISDAIKGISPRFRAASGDLLYKRFSSVLYRTENEKERRREKRRFVAVRSSPSS 60

Query: 87  VSSSLPALTAVCHLR 102
           V SSL +LTA+CHLR
Sbjct: 61  VPSSLSSLTAICHLR 75

BLAST of IVF0004646 vs. ExPASy TrEMBL
Match: A0A5A7V9W7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001110 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
          +S+GNTLIPD +KGIFR FRA S + LYKRFN ILHR + + + RREKRRF+ I SS  S
Sbjct: 1  MSIGNTLIPDTIKGIFRCFRAASDDSLYKRFNYILHRTENERERRREKRRFIAICSSSPS 60

Query: 87 VSSSL 92
          VSSSL
Sbjct: 61 VSSSL 65

BLAST of IVF0004646 vs. ExPASy TrEMBL
Match: A0A5A7UAX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001380 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 27  VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
           +SVGNT+IP+AV    R    ++ + L+         +K KGK RREKRR  TIRSS  S
Sbjct: 1   MSVGNTIIPEAVVW-HREILFINVSVLF------YTELKTKGKRRREKRRAFTIRSSSPS 60

Query: 87  VSSSLPALTAVCHLRM 103
           V SSLP+L AVCHL +
Sbjct: 61  VLSSLPSLAAVCHLSL 69

BLAST of IVF0004646 vs. ExPASy TrEMBL
Match: A0A5D3E0D4 (Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00150 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRI----KKKGKERREKRRFVTIRS 86
          +SVGNTLI D +KGI RRFRA S +PL+K F+S+LHRI    +++ +E +  RR    R 
Sbjct: 1  MSVGNTLILDDIKGISRRFRAASGDPLFKCFSSVLHRIESERERENRETKIHRRPFRRRC 60

Query: 87 SPSSVSSSLPALTA 97
           PS  SS+   + A
Sbjct: 61 RPSPPSSATLVMVA 74

BLAST of IVF0004646 vs. ExPASy TrEMBL
Match: A0A5A7V7N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00660 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRI---KKKGKERREKRRFVTIRSS 86
          +SVGN  IPDA  GI R     S NPLYK F+S+ HRI   K KG + R K   +    S
Sbjct: 1  MSVGNNGIPDAFLGIARHCPTASRNPLYKLFSSVFHRIETEKGKGGKNRTKATVLLSLPS 60

Query: 87 PSSVSSSLPALTAV 98
          P SV SSLP+L  V
Sbjct: 61 PPSVLSSLPSLAVV 74

BLAST of IVF0004646 vs. NCBI nr
Match: KAA0045869.1 (uncharacterized protein E6C27_scaffold243G004050 [Cucumis melo var. makuwa] >TYK13719.1 uncharacterized protein E5676_scaffold299G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 8.04e-22
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 27  VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
           +SV NTLI DA+KGI  RFRA S + LYKRF+S+L+R + + + RREKRRFV +RSSPSS
Sbjct: 1   MSVENTLISDAIKGISPRFRAASGDLLYKRFSSVLYRTENEKERRREKRRFVAVRSSPSS 60

Query: 87  VSSSLPALTAVCHLR 101
           V SSL +LTA+CHLR
Sbjct: 61  VPSSLSSLTAICHLR 75

BLAST of IVF0004646 vs. NCBI nr
Match: KAA0062461.1 (hypothetical protein E6C27_scaffold130G00490 [Cucumis melo var. makuwa] >TYK27421.1 hypothetical protein E5676_scaffold325G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.04e-17
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
          +S+GNTLIPD +KGIFR FRA S + LYKRFN ILHR + + + RREKRRF+ I SS  S
Sbjct: 1  MSIGNTLIPDTIKGIFRCFRAASDDSLYKRFNYILHRTENERERRREKRRFIAICSSSPS 60

Query: 87 VSSSL 91
          VSSSL
Sbjct: 61 VSSSL 65

BLAST of IVF0004646 vs. NCBI nr
Match: KAA0050659.1 (hypothetical protein E6C27_scaffold673G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.82e-08
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 27  VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRIKKKGKERREKRRFVTIRSSPSS 86
           +SVGNT+IP+AV    R    ++ + L+         +K KGK RREKRR  TIRSS  S
Sbjct: 1   MSVGNTIIPEAVVW-HREILFINVSVLF------YTELKTKGKRRREKRRAFTIRSSSPS 60

Query: 87  VSSSLPALTAVCHLRM 102
           V SSLP+L AVCHL +
Sbjct: 61  VLSSLPSLAAVCHLSL 69

BLAST of IVF0004646 vs. NCBI nr
Match: KAA0063250.1 (hypothetical protein E6C27_scaffold205G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.88e-08
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRI---KKKGKERREKRRFVTIRSS 86
          +SVGN  IPDA  GI R     S NPLYK F+S+ HRI   K KG + R K   +    S
Sbjct: 1  MSVGNNGIPDAFLGIARHCPTASRNPLYKLFSSVFHRIETEKGKGGKNRTKATVLLSLPS 60

Query: 87 PSSVSSSLPALTAV 97
          P SV SSLP+L  V
Sbjct: 61 PPSVLSSLPSLAVV 74

BLAST of IVF0004646 vs. NCBI nr
Match: TYK31523.1 (hypothetical protein E5676_scaffold455G008490 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 7.15e-08
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 27 VSVGNTLIPDAVKGIFRRFRAVSANPLYKRFNSILHRI---KKKGKERREKRRFVTIRSS 86
          +SVGN  IPDA  GI R     S NPLYK F+S+ HRI   K KG + R K   +    S
Sbjct: 1  MSVGNNGIPDAFLGIARHCPTASRNPLYKLFSSVFHRIETEKGKGGKNRTKATVLLSLPS 60

Query: 87 PSSVSSSLPALTAV 97
          P SV SSLP+L  V
Sbjct: 61 PPSVLSSLPSLAVV 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CU451.9e-1665.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9W71.2e-1266.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UAX48.6e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E0D42.5e-0547.30Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7V7N02.5e-0550.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0045869.18.04e-2265.33uncharacterized protein E6C27_scaffold243G004050 [Cucumis melo var. makuwa] >TYK... [more]
KAA0062461.12.04e-1766.15hypothetical protein E6C27_scaffold130G00490 [Cucumis melo var. makuwa] >TYK2742... [more]
KAA0050659.12.82e-0850.00hypothetical protein E6C27_scaffold673G001380 [Cucumis melo var. makuwa][more]
KAA0063250.14.88e-0850.00hypothetical protein E6C27_scaffold205G00660 [Cucumis melo var. makuwa][more]
TYK31523.17.15e-0850.00hypothetical protein E5676_scaffold455G008490 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004646.1IVF0004646.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane