IVF0004642 (gene) Melon (IVF77) v1

Overview
NameIVF0004642
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDrebrin-like
Locationchr08: 19700148 .. 19700444 (-)
RNA-Seq ExpressionIVF0004642
SyntenyIVF0004642
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAATATGTGAGCACATTCTCGCATCGTTCAAGCATCCCCGTGGCGCAAGACCCTTTCTGCATTTGATAGAAAATTTGTGTTTGAAGGCTTGTCCAACATTAAAGAAGCTTTGTCAAGTAGAAGTGAAGAATGGGGTTTGTACTGCCTCAACCATCCGCCGCATCATTGCCATCCACAAAAATAAAGTAAGGCTTAAACGCCTCAAGTCAAATAAGAAGGTCAAACAAAGGCTGAAGACGTGGATGACAGTGTTGAAGAAGAAGAAAGAGAGAAAGATAATGTCGCACTAA

mRNA sequence

ATGGACATAATATGTGAGCACATTCTCGCATCGTTCAAGCATCCCCGTGGCGCAAGACCCTTTCTGCATTTGATAGAAAATTTGTGTTTGAAGGCTTGTCCAACATTAAAGAAGCTTTGTCAAGTAGAAGTGAAGAATGGGGTTTGTACTGCCTCAACCATCCGCCGCATCATTGCCATCCACAAAAATAAAGTAAGGCTTAAACGCCTCAAGTCAAATAAGAAGGTCAAACAAAGGCTGAAGACGTGGATGACAGTGTTGAAGAAGAAGAAAGAGAGAAAGATAATGTCGCACTAA

Coding sequence (CDS)

ATGGACATAATATGTGAGCACATTCTCGCATCGTTCAAGCATCCCCGTGGCGCAAGACCCTTTCTGCATTTGATAGAAAATTTGTGTTTGAAGGCTTGTCCAACATTAAAGAAGCTTTGTCAAGTAGAAGTGAAGAATGGGGTTTGTACTGCCTCAACCATCCGCCGCATCATTGCCATCCACAAAAATAAAGTAAGGCTTAAACGCCTCAAGTCAAATAAGAAGGTCAAACAAAGGCTGAAGACGTGGATGACAGTGTTGAAGAAGAAGAAAGAGAGAAAGATAATGTCGCACTAA

Protein sequence

MDIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIHKNKVRLKRLKSNKKVKQRLKTWMTVLKKKKERKIMSH
Homology
BLAST of IVF0004642 vs. ExPASy TrEMBL
Match: A0A5A7VJ48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004490 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHIL   KHP GAR F HLIE LCLK C  L+KL QVEVK+G+CT  T+ RIIAIH
Sbjct: 127 EIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTITLPRIIAIH 186

Query: 62  KNKVRLKRLKSNKK 76
           KNK RLKRLK+ K+
Sbjct: 187 KNKARLKRLKTKKE 200

BLAST of IVF0004642 vs. ExPASy TrEMBL
Match: A0A5D3BPB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00710 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHIL   KHP GAR F HLIE LCLK C  L+KL QVEVK+G+CT  T+ RIIAIH
Sbjct: 30  EIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTITLPRIIAIH 89

Query: 62  KNKVRLKRLKSNKK 76
           KNK RLKRLK+ K+
Sbjct: 90  KNKARLKRLKTKKE 103

BLAST of IVF0004642 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-17
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHI A  KHP+G+RPF HLIE LCLKACP+L+KL QVEVK+ V TAST+   IAIH
Sbjct: 30  EIICEHIFAWVKHPQGSRPFPHLIEKLCLKACPSLEKLPQVEVKDRVYTASTLYCFIAIH 89

Query: 62  KNKVRLKRLKSNKKVKQRLKTWMTVLK 89
           KNK RLK LK+  + +  +     +L+
Sbjct: 90  KNKSRLKHLKTKHEARTSIPLQEEILQ 116

BLAST of IVF0004642 vs. ExPASy TrEMBL
Match: A0A0A0LAN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 3   IICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIHK 62
           II  HI+A  KHPRGARPF +LIE LCL+AC  L+KL QVEVK+G+   ST+ RIIAIHK
Sbjct: 68  IISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHK 127

Query: 63  NKVRLKRLKSNKKVK 78
           NK ++K LK+ +  K
Sbjct: 128 NKAKIKCLKTKEGCK 142

BLAST of IVF0004642 vs. ExPASy TrEMBL
Match: A0A5A7TV72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006200 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 2  DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
          ++I EHI+A  KHP G RPF  LIE LCLKAC TLK+  QVE+K+GV T +T+  IIA+H
Sbjct: 20 EMISEHIIAWVKHPCGLRPFPQLIERLCLKACLTLKQFPQVELKDGVWTVTTLHHIIAVH 79

Query: 62 KNKVRLKRLKSNKKVKQRLK 82
          KNK + KR K+ +  K  ++
Sbjct: 80 KNKAKFKRHKTKQDGKSEVE 99

BLAST of IVF0004642 vs. NCBI nr
Match: TYK00908.1 (hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.55e-25
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHIL   KHP GAR F HLIE LCLK C  L+KL QVEVK+G+CT  T+ RIIAIH
Sbjct: 30  EIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTITLPRIIAIH 89

Query: 62  KNKVRLKRLKSNK 74
           KNK RLKRLK+ K
Sbjct: 90  KNKARLKRLKTKK 102

BLAST of IVF0004642 vs. NCBI nr
Match: KAA0066376.1 (hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 2.07e-24
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHIL   KHP GAR F HLIE LCLK C  L+KL QVEVK+G+CT  T+ RIIAIH
Sbjct: 127 EIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTITLPRIIAIH 186

Query: 62  KNKVRLKRLKSNK 74
           KNK RLKRLK+ K
Sbjct: 187 KNKARLKRLKTKK 199

BLAST of IVF0004642 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.42e-22
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 2   DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
           +IICEHI A  KHP+G+RPF HLIE LCLKACP+L+KL QVEVK+ V TAST+   IAIH
Sbjct: 30  EIICEHIFAWVKHPQGSRPFPHLIEKLCLKACPSLEKLPQVEVKDRVYTASTLYCFIAIH 89

Query: 62  KNKVRLKRLKS 72
           KNK RLK LK+
Sbjct: 90  KNKSRLKHLKT 100

BLAST of IVF0004642 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_009739 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 4.72e-20
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 3   IICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIHK 62
           II  HI+A  KHPRGARPF +LIE LCL+AC  L+KL QVEVK+G+   ST+ RIIAIHK
Sbjct: 68  IISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHK 127

Query: 63  NKVRLKRLKS 72
           NK ++K LK+
Sbjct: 128 NKAKIKCLKT 137

BLAST of IVF0004642 vs. NCBI nr
Match: KAA0046046.1 (hypothetical protein E6C27_scaffold243G006200 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 5.71e-19
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 2  DIICEHILASFKHPRGARPFLHLIENLCLKACPTLKKLCQVEVKNGVCTASTIRRIIAIH 61
          ++I EHI+A  KHP G RPF  LIE LCLKAC TLK+  QVE+K+GV T +T+  IIA+H
Sbjct: 20 EMISEHIIAWVKHPCGLRPFPQLIERLCLKACLTLKQFPQVELKDGVWTVTTLHHIIAVH 79

Query: 62 KNKVRLKRLKS 72
          KNK + KR K+
Sbjct: 80 KNKAKFKRHKT 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VJ482.4e-1868.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BPB12.4e-1868.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SRQ17.6e-1758.62Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P... [more]
A0A0A0LAN09.3e-1561.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1[more]
A0A5A7TV725.1e-1353.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK00908.11.55e-2569.86hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa][more]
KAA0066376.12.07e-2469.86hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa][more]
KAA0032726.11.42e-2270.42drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v... [more]
KGN57727.14.72e-2064.29hypothetical protein Csa_009739 [Cucumis sativus][more]
KAA0046046.15.71e-1959.15hypothetical protein E6C27_scaffold243G006200 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004642.1IVF0004642.1mRNA