Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAGTAGACTGTTGATATTGTATTTGTAGGGAGAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGCGAAGGAAGAACTGATGAATGAATGGATAGAAATGCAATGGTAGCATTGTAAGGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG
mRNA sequence
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG
Coding sequence (CDS)
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG
Protein sequence
MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQMLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTHVCLT
Homology
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match:
A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 77/154 (50.00%), Postives = 94/154 (61.04%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
M+F+QR KEN++D W FK LVKACP +GI ECV ME FYF LS+DT ML
Sbjct: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----------------MNKLLKSM 120
+SSYNQIK LD+M+NN+++W D GFGSR + E MN LL+SM
Sbjct: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
Query: 121 ALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH 129
LSQVNAA+N IHAV QV++ D A T H
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAH 154
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match:
A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDT----------QML 60
M F QR +ENL D+W FK ++K CPH+ I ECVLME FYF LS++T ML
Sbjct: 1 MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE 120
+SSYNQIK MLD MA+N+++W+D+ FGSR + QV E
Sbjct: 61 RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120
Query: 121 MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP 124
MN +L+SMAL QVN +S+ V QV+EMGCV P
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAP 156
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match:
A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 0
Query: 2 LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQ 61
+FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q +L+
Sbjct: 19 VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
Query: 62 SSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------------------QVNEMNKL 92
+SYNQ KTMLD M +N+++ +DD S+QE QV EMNKL
Sbjct: 79 NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match:
A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
+LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+ +L
Sbjct: 98 ILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGIL 157
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVN 120
+SSYNQIK MLD+MANN++ +S HAV
Sbjct: 158 RSSYNQIKAMLDSMANNSQ----------------------------------DSCHAVK 196
Query: 121 QVDEMGCVDAADP 124
V+EM C P
Sbjct: 218 HVEEMDCAGCGGP 196
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match:
A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
MLF+QR ENL+D W FK ++K C GI E VLME FYF+LS+DTQ ML
Sbjct: 142 MLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKLSKDTQHTVGAVFAGGML 201
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSR 80
+S YNQIK+ML++MA N+++W D F SR
Sbjct: 202 KSFYNQIKSMLNSMAGNSQEWDDSDFSSR 230
BLAST of IVF0004619 vs. NCBI nr
Match:
KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])
HSP 1 Score: 132 bits (331), Expect = 3.31e-36
Identity = 77/154 (50.00%), Postives = 94/154 (61.04%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
M+F+QR KEN++D W FK LVKACP +GI ECV ME FYF LS+DT ML
Sbjct: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----------------MNKLLKSM 120
+SSYNQIK LD+M+NN+++W D GFGSR + E MN LL+SM
Sbjct: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
Query: 121 ALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH 128
LSQVNAA+N IHAV QV++ D A T H
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAH 154
BLAST of IVF0004619 vs. NCBI nr
Match:
KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])
HSP 1 Score: 123 bits (309), Expect = 8.96e-31
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
M F QR +ENL D+W FK ++K CPH+ I ECVLME FYF LS++T ML
Sbjct: 1 MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE 120
+SSYNQIK MLD MA+N+++W+D+ FGSR + QV E
Sbjct: 61 RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120
Query: 121 MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP 123
MN +L+SMAL QVN +S+ V QV+EMGCV P
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAP 156
BLAST of IVF0004619 vs. NCBI nr
Match:
KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])
HSP 1 Score: 99.0 bits (245), Expect = 2.02e-23
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 0
Query: 2 LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQ 61
+FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q +L+
Sbjct: 19 VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
Query: 62 SSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------------------QVNEMNKL 91
+SYNQ KTMLD M +N+++ +DD S+QE QV EMNKL
Sbjct: 79 NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
BLAST of IVF0004619 vs. NCBI nr
Match:
KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])
HSP 1 Score: 89.4 bits (220), Expect = 7.95e-20
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0
Query: 21 LVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKK 80
++K C H+ IL CV++E FYF LS DTQ ML+ S N IKT LDAM +N+++
Sbjct: 1 MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
Query: 81 WKDDGFGSRQER------------------------QVNEMNKLLKSMALSQVNAASNSI 112
W+D+ FGS E QV EMNKLL+SMALSQ+NA +SI
Sbjct: 61 WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
BLAST of IVF0004619 vs. NCBI nr
Match:
KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])
HSP 1 Score: 93.2 bits (230), Expect = 3.40e-19
Identity = 54/133 (40.60%), Postives = 70/133 (52.63%), Query Frame = 0
Query: 1 MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
+LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+ +L
Sbjct: 98 ILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGIL 157
Query: 61 QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVN 120
+SSYNQIK MLD+MANN + +S HAV
Sbjct: 158 RSSYNQIKAMLDSMANN----------------------------------SQDSCHAVK 196
Query: 121 QVDEMGCVDAADP 123
V+EM C P
Sbjct: 218 HVEEMDCAGCGGP 196
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K6F9 | 1.1e-26 | 50.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1 | [more] |
A0A5D3CC26 | 2.3e-24 | 45.86 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TUE1 | 2.1e-17 | 47.93 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V1F3 | 4.3e-15 | 40.60 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3DR17 | 2.1e-14 | 52.81 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KGN44484.1 | 3.31e-36 | 50.00 | hypothetical protein Csa_015918 [Cucumis sativus] | [more] |
KAA0048713.1 | 8.96e-31 | 45.86 | hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... | [more] |
KAA0046468.1 | 2.02e-23 | 47.93 | hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... | [more] |
KGN53801.1 | 7.95e-20 | 43.65 | hypothetical protein Csa_014772 [Cucumis sativus] | [more] |
KAA0061983.1 | 3.40e-19 | 40.60 | uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |