IVF0004619 (gene) Melon (IVF77) v1

Overview
NameIVF0004619
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr05: 12163442 .. 12163924 (-)
RNA-Seq ExpressionIVF0004619
SyntenyIVF0004619
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAGTAGACTGTTGATATTGTATTTGTAGGGAGAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGCGAAGGAAGAACTGATGAATGAATGGATAGAAATGCAATGGTAGCATTGTAAGGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG

mRNA sequence

ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG

Coding sequence (CDS)

ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGAGGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATGATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAATCAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG

Protein sequence

MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQMLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTHVCLT
Homology
BLAST of IVF0004619 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 77/154 (50.00%), Postives = 94/154 (61.04%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           M+F+QR KEN++D W  FK LVKACP +GI ECV ME FYF LS+DT           ML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----------------MNKLLKSM 120
           +SSYNQIK  LD+M+NN+++W D GFGSR   +  E                MN LL+SM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

Query: 121 ALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH 129
            LSQVNAA+N IHAV QV++    D A  T   H
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAH 154

BLAST of IVF0004619 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDT----------QML 60
           M F QR +ENL D+W  FK ++K CPH+ I ECVLME FYF LS++T           ML
Sbjct: 1   MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE 120
           +SSYNQIK MLD MA+N+++W+D+ FGSR +                         QV E
Sbjct: 61  RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120

Query: 121 MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP 124
           MN +L+SMAL QVN   +S+  V QV+EMGCV    P
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAP 156

BLAST of IVF0004619 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 2   LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQ 61
           +FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q          +L+
Sbjct: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78

Query: 62  SSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------------------QVNEMNKL 92
           +SYNQ KTMLD M +N+++ +DD   S+QE                      QV EMNKL
Sbjct: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138

BLAST of IVF0004619 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           +LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+          +L
Sbjct: 98  ILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGIL 157

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVN 120
           +SSYNQIK MLD+MANN++                                  +S HAV 
Sbjct: 158 RSSYNQIKAMLDSMANNSQ----------------------------------DSCHAVK 196

Query: 121 QVDEMGCVDAADP 124
            V+EM C     P
Sbjct: 218 HVEEMDCAGCGGP 196

BLAST of IVF0004619 vs. ExPASy TrEMBL
Match: A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           MLF+QR  ENL+D W  FK ++K C   GI E VLME FYF+LS+DTQ          ML
Sbjct: 142 MLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKLSKDTQHTVGAVFAGGML 201

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSR 80
           +S YNQIK+ML++MA N+++W D  F SR
Sbjct: 202 KSFYNQIKSMLNSMAGNSQEWDDSDFSSR 230

BLAST of IVF0004619 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 132 bits (331), Expect = 3.31e-36
Identity = 77/154 (50.00%), Postives = 94/154 (61.04%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           M+F+QR KEN++D W  FK LVKACP +GI ECV ME FYF LS+DT           ML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----------------MNKLLKSM 120
           +SSYNQIK  LD+M+NN+++W D GFGSR   +  E                MN LL+SM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

Query: 121 ALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH 128
            LSQVNAA+N IHAV QV++    D A  T   H
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAH 154

BLAST of IVF0004619 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 8.96e-31
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           M F QR +ENL D+W  FK ++K CPH+ I ECVLME FYF LS++T           ML
Sbjct: 1   MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE 120
           +SSYNQIK MLD MA+N+++W+D+ FGSR +                         QV E
Sbjct: 61  RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120

Query: 121 MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP 123
           MN +L+SMAL QVN   +S+  V QV+EMGCV    P
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAP 156

BLAST of IVF0004619 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.02e-23
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 2   LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQ 61
           +FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q          +L+
Sbjct: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78

Query: 62  SSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------------------QVNEMNKL 91
           +SYNQ KTMLD M +N+++ +DD   S+QE                      QV EMNKL
Sbjct: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138

BLAST of IVF0004619 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 7.95e-20
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0

Query: 21  LVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKK 80
           ++K C H+ IL CV++E FYF LS DTQ          ML+ S N IKT LDAM +N+++
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 81  WKDDGFGSRQER------------------------QVNEMNKLLKSMALSQVNAASNSI 112
           W+D+ FGS  E                         QV EMNKLL+SMALSQ+NA  +SI
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

BLAST of IVF0004619 vs. NCBI nr
Match: KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.40e-19
Identity = 54/133 (40.60%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------ML 60
           +LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+          +L
Sbjct: 98  ILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGIL 157

Query: 61  QSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVN 120
           +SSYNQIK MLD+MANN                                  + +S HAV 
Sbjct: 158 RSSYNQIKAMLDSMANN----------------------------------SQDSCHAVK 196

Query: 121 QVDEMGCVDAADP 123
            V+EM C     P
Sbjct: 218 HVEEMDCAGCGGP 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6F91.1e-2650.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5D3CC262.3e-2445.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TUE12.1e-1747.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1F34.3e-1540.60Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DR172.1e-1452.81Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
KGN44484.13.31e-3650.00hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0048713.18.96e-3145.86hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KAA0046468.12.02e-2347.93hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... [more]
KGN53801.17.95e-2043.65hypothetical protein Csa_014772 [Cucumis sativus][more]
KAA0061983.13.40e-1940.60uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004619.1IVF0004619.1mRNA