IVF0004613 (gene) Melon (IVF77) v1

Overview
NameIVF0004613
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 31861290 .. 31861718 (+)
RNA-Seq ExpressionIVF0004613
SyntenyIVF0004613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGGTAGGAAAATGAGCAAAATCCTGCGATATGGTTTTATTTCATTTAAACCAATGTGATATAGGTATCAGGGCTAAGAAATATTTTAAAAAAACAAAACCCTAGTTTTAACTTAGAGCATCAAACCCTAGCTGCCTCACCTAGCCGGCGCCGATGGAAACCGACCGGAACCCTAGCTACTGTCTTTAACAGCACACAACACCTCCGGCGTGTTTGTGGTCGAAGTATCTGTTCCCGCCCGTCAGATCACCCTTTAGTCCACCCCAACCGTCGACTTTGAAGTCCGTTTGTGGTTGTGTTAGCAGACATTGTTCGTTGGCTTCGATCGCGGTTGTTCGGCGGGATCGTGGCAAAAGATCTGTGTGTTTGCGAGAGGATGGAGATGAAAATGGGAAGAGAGTGGAGCGAGGGAGTGAGGGAGTAG

mRNA sequence

ATGGGCAGTTTTAACTTAGAGCATCAAACCCTAGCTGCCTCACCTAGCCGGCGCCGATGGAAACCGACCGGAACCCTAGCTACTGTCTTTAACAGCACACAACACCTCCGGCGTGTTTGTGGTCGAAGTATCTGTTCCCGCCCGTCAGATCACCCTTTAGTCCACCCCAACCCAGACATTGTTCGTTGGCTTCGATCGCGGTTGTTCGGCGGGATCGTGGCAAAAGATCTGTGTGTTTGCGAGAGGATGGAGATGAAAATGGGAAGAGAGTGGAGCGAGGGAGTGAGGGAGTAG

Coding sequence (CDS)

ATGGGCAGTTTTAACTTAGAGCATCAAACCCTAGCTGCCTCACCTAGCCGGCGCCGATGGAAACCGACCGGAACCCTAGCTACTGTCTTTAACAGCACACAACACCTCCGGCGTGTTTGTGGTCGAAGTATCTGTTCCCGCCCGTCAGATCACCCTTTAGTCCACCCCAACCCAGACATTGTTCGTTGGCTTCGATCGCGGTTGTTCGGCGGGATCGTGGCAAAAGATCTGTGTGTTTGCGAGAGGATGGAGATGAAAATGGGAAGAGAGTGGAGCGAGGGAGTGAGGGAGTAG

Protein sequence

MGSFNLEHQTLAASPSRRRWKPTGTLATVFNSTQHLRRVCGRSICSRPSDHPLVHPNPDIVRWLRSRLFGGIVAKDLCVCERMEMKMGREWSEGVRE
Homology
[Close]
BLAST of IVF0004613 vs. ExPASy TrEMBL
Match: A0A0A0KC93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447730 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 73/110 (66.36%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 1   MGSFNLEHQTLAASPSRRRWKPTGTLATVFNSTQHLRRVCGRSICSRPSDHPLVHPN--- 60
           MGSFNLEHQTLAASPS+RRWKPTGTLATVFNS Q+LRRVCGRSI S  SDHPLVHPN   
Sbjct: 1   MGSFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRL 60

Query: 61  --------PDIVRWLRSRL------FGGIVAKDLCVCERMEMKMGREWSE 94
                    DIVRWL SRL        G+  + +  CE MEMKMGREW E
Sbjct: 61  GSPFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV-FCEGMEMKMGREWRE 109

[Close]
BLAST of IVF0004613 vs. NCBI nr
Match: KGN45411.1 (hypothetical protein Csa_016605 [Cucumis sativus])

HSP 1 Score: 132 bits (333), Expect = 8.13e-38
Identity = 73/110 (66.36%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 1   MGSFNLEHQTLAASPSRRRWKPTGTLATVFNSTQHLRRVCGRSICSRPSDHPLVHPNP-- 60
           MGSFNLEHQTLAASPS+RRWKPTGTLATVFNS Q+LRRVCGRSI S  SDHPLVHPN   
Sbjct: 1   MGSFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRL 60

Query: 61  ---------DIVRWLRSRL------FGGIVAKDLCVCERMEMKMGREWSE 93
                    DIVRWL SRL        G+  + +  CE MEMKMGREW E
Sbjct: 61  GSPFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV-FCEGMEMKMGREWRE 109

The following BLAST results are available for this feature:
BLAST of IVF0004613 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004613 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC933.3e-2866.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447730 PE=4 SV=1[more]
BLAST of IVF0004613 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45411.18.13e-3866.36hypothetical protein Csa_016605 [Cucumis sativus][more]
BLAST of IVF0004613 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004613.1IVF0004613.1mRNA