IVF0004542 (gene) Melon (IVF77) v1

Overview
NameIVF0004542
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 14678202 .. 14678369 (+)
RNA-Seq ExpressionIVF0004542
SyntenyIVF0004542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTTCGGCTAGGTACGTGGAAGGAGGACCAGCAAATTGGACGCGGAAGATTGGGCTTAGTGCGGTGAAGGATGACCAGCGAAAGATTGGGCTGCTTACACAGAAGGATCACCGTCGGTGGAAGATACGACTGCTCGCGCGTAAGGACAACCGTGGGTTATGA

mRNA sequence

ATGGAAGCTTCGGCTAGGTACGTGGAAGGAGGACCAGCAAATTGGACGCGGAAGATTGGGCTTAGTGCGGTGAAGGATGACCAGCGAAAGATTGGGCTGCTTACACAGAAGGATCACCGTCGGTGGAAGATACGACTGCTCGCGCGTAAGGACAACCGTGGGTTATGA

Coding sequence (CDS)

ATGGAAGCTTCGGCTAGGTACGTGGAAGGAGGACCAGCAAATTGGACGCGGAAGATTGGGCTTAGTGCGGTGAAGGATGACCAGCGAAAGATTGGGCTGCTTACACAGAAGGATCACCGTCGGTGGAAGATACGACTGCTCGCGCGTAAGGACAACCGTGGGTTATGA

Protein sequence

MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL
Homology
[Close]
BLAST of IVF0004542 vs. ExPASy TrEMBL
Match: A0A5A7TUC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00480 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1   MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL 56
           MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL
Sbjct: 195 MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL 249

[Close]
BLAST of IVF0004542 vs. NCBI nr
Match: KAA0047173.1 (hypothetical protein E6C27_scaffold83G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 1.73e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1   MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL 55
           MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL
Sbjct: 195 MEASARYVEGGPANWTRKIGLSAVKDDQRKIGLLTQKDHRRWKIRLLARKDNRGL 249

The following BLAST results are available for this feature:
BLAST of IVF0004542 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004542 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TUC68.9e-23100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0004542 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047173.11.73e-29100.00hypothetical protein E6C27_scaffold83G00480 [Cucumis melo var. makuwa][more]
BLAST of IVF0004542 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004542.1IVF0004542.1mRNA