IVF0004541 (gene) Melon (IVF77) v1

Overview
NameIVF0004541
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr04: 11926736 .. 11926894 (+)
RNA-Seq ExpressionIVF0004541
SyntenyIVF0004541
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTACTACCATAGAAAAAGAGTTTATGAGAGGATCGTCTTCTAAAACTAAAGTTGGGAATTCACAAATGAAGAAGAAGGGAAAGGGGAAGATTCCCAAGAACAATAAGGGAAAAAGTTGCAAAAGGTAA

mRNA sequence

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTACTACCATAGAAAAAGAGTTTATGAGAGGATCGTCTTCTAAAACTAAAGTTGGGAATTCACAAATGAAGAAGAAGGGAAAGGGGAAGATTCCCAAGAACAATAAGGGAAAAAGTTGCAAAAGGTAA

Coding sequence (CDS)

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTACTACCATAGAAAAAGAGTTTATGAGAGGATCGTCTTCTAAAACTAAAGTTGGGAATTCACAAATGAAGAAGAAGGGAAAGGGGAAGATTCCCAAGAACAATAAGGGAAAAAGTTGCAAAAGGTAA

Protein sequence

MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGKSCKR
Homology
BLAST of IVF0004541 vs. ExPASy TrEMBL
Match: A0A5D3CXH7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00610 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1  MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGKSCKR 53
          MGKGKEVEAN+ T EKEFMRG SSKTKVG SQMKKKGKGK PKN+KGK   R
Sbjct: 27 MGKGKEVEANVATTEKEFMRGWSSKTKVGPSQMKKKGKGKTPKNSKGKKSTR 78

BLAST of IVF0004541 vs. ExPASy TrEMBL
Match: A0A5A7TD75 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002290 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1  MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGKSCKR 53
          MGKGKEVEAN+ T EKEFMRG SSKTKVG SQMKKKGKGK PKN+KGK   R
Sbjct: 27 MGKGKEVEANVATTEKEFMRGWSSKTKVGPSQMKKKGKGKTPKNSKGKKSTR 78

BLAST of IVF0004541 vs. ExPASy TrEMBL
Match: A0A5D3E379 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1985G00020 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-10
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 49
           MGK KEVEAN+ TIEKEFM GS SKTKVG SQMKKKGKGK PKN+KGK
Sbjct: 112 MGKEKEVEANVATIEKEFMGGSYSKTKVGASQMKKKGKGKTPKNSKGK 159

BLAST of IVF0004541 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 49
           MGKGKEVEANI TIEKE + GSSSKT+VG SQ+KKKGKGK PKN+KGK
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGK 118

BLAST of IVF0004541 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 49
           MGKGKEVEANI T EKE + GSSSKT+VG SQ+KKKGKGK PKN+KGK
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGK 118

BLAST of IVF0004541 vs. NCBI nr
Match: TYK16050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.51e-16
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1  MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGKSCKR 52
          MGKGKEVEAN+ T EKEFMRG SSKTKVG SQMKKKGKGK PKN+KGK   R
Sbjct: 27 MGKGKEVEANVATTEKEFMRGWSSKTKVGPSQMKKKGKGKTPKNSKGKKSTR 78

BLAST of IVF0004541 vs. NCBI nr
Match: KAA0041250.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.51e-16
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1  MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGKSCKR 52
          MGKGKEVEAN+ T EKEFMRG SSKTKVG SQMKKKGKGK PKN+KGK   R
Sbjct: 27 MGKGKEVEANVATTEKEFMRGWSSKTKVGPSQMKKKGKGKTPKNSKGKKSTR 78

BLAST of IVF0004541 vs. NCBI nr
Match: TYK30527.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 7.33e-14
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 48
           MGK KEVEAN+ TIEKEFM GS SKTKVG SQMKKKGKGK PKN+KGK
Sbjct: 112 MGKEKEVEANVATIEKEFMGGSYSKTKVGASQMKKKGKGKTPKNSKGK 159

BLAST of IVF0004541 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.15e-13
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 48
           MGKGKEVEANI TIEKE + GSSSKT+VG SQ+KKKGKGK PKN+KGK
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGK 118

BLAST of IVF0004541 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 6.43e-13
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MGKGKEVEANITTIEKEFMRGSSSKTKVGNSQMKKKGKGKIPKNNKGK 48
           MGKGKEVEANI T EKE + GSSSKT+VG SQ+KKKGKGK PKN+KGK
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGK 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CXH75.7e-1180.77Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00610... [more]
A0A5A7TD755.7e-1180.77Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G0022... [more]
A0A5D3E3796.3e-1083.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1985G000... [more]
A0A5A7T0L91.1e-0981.25Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029... [more]
A0A5D3E1U54.1e-0979.17Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010... [more]
Match NameE-valueIdentityDescription
TYK16050.12.51e-1680.77gag/pol protein [Cucumis melo var. makuwa][more]
KAA0041250.12.51e-1680.77gag/pol protein [Cucumis melo var. makuwa][more]
TYK30527.17.33e-1483.33gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035756.11.15e-1381.25gag/pol protein [Cucumis melo var. makuwa][more]
TYK29862.16.43e-1379.17gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004541.1IVF0004541.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding