IVF0004515 (gene) Melon (IVF77) v1

Overview
NameIVF0004515
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Locationchr04: 1547048 .. 1547320 (-)
RNA-Seq ExpressionIVF0004515
SyntenyIVF0004515
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGTCGAAAAATAAAGAAGAAAATAATAAGAAAAAGAATAATACTACTAATATTACGTGCATGGCAGCTGAAACAAGTAGATTGAATAATCGAAGTGGGGGATTATTCAGGTACGACGCATTAAGCTATGCTCAAAATTTTGACGAGGGATTGGCTAATGCTGACGAAGAAGGATCCCATCGAAGTTTTTCTGCAAGATATGCTATTCCTTCCCAACCCCCAACTAAAAAGTTAGGATAG

mRNA sequence

ATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGTCGAAAAATAAAGAAGAAAATAATAAGAAAAAGAATAATACTACTAATATTACGTGCATGGCAGCTGAAACAAGTAGATTGAATAATCGAAGTGGGGGATTATTCAGGTACGACGCATTAAGCTATGCTCAAAATTTTGACGAGGGATTGGCTAATGCTGACGAAGAAGGATCCCATCGAAGTTTTTCTGCAAGATATGCTATTCCTTCCCAACCCCCAACTAAAAAGTTAGGATAG

Coding sequence (CDS)

ATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGTCGAAAAATAAAGAAGAAAATAATAAGAAAAAGAATAATACTACTAATATTACGTGCATGGCAGCTGAAACAAGTAGATTGAATAATCGAAGTGGGGGATTATTCAGGTACGACGCATTAAGCTATGCTCAAAATTTTGACGAGGGATTGGCTAATGCTGACGAAGAAGGATCCCATCGAAGTTTTTCTGCAAGATATGCTATTCCTTCCCAACCCCCAACTAAAAAGTTAGGATAG

Protein sequence

MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDEGLANADEEGSHRSFSARYAIPSQPPTKKLG
Homology
BLAST of IVF0004515 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 0

Query: 1   MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
           MSCWERL+MKILS+ KE N   KN+ TNITCM  ETS LNNRSGGLF+YDALSYA+NFDE
Sbjct: 14  MSCWERLRMKILSRKKEGNINNKND-TNITCMGGETSGLNNRSGGLFKYDALSYAKNFDE 73

Query: 61  GLANADEEGSHRSFSARYAIPSQPPTKKLG 91
           GLANAD EGS RSFSARYA+PS+PP KKLG
Sbjct: 74  GLANADGEGSFRSFSARYAVPSKPPAKKLG 102

BLAST of IVF0004515 vs. ExPASy TrEMBL
Match: K7KJ14 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G090800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
          +SCW RLK+K+                     A  TS    +S G F+YD LSYAQNFDE
Sbjct: 16 LSCWGRLKLKL-------------------PWAKRTS--TYKSIGGFKYDPLSYAQNFDE 75

Query: 61 GLANADEEGSHRSFSARYAIPS 83
          G    DEE  HR FSARYA PS
Sbjct: 76 GWVEDDEESLHRGFSARYAAPS 76

BLAST of IVF0004515 vs. ExPASy TrEMBL
Match: A0A059BR02 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02166 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 2   SCWERLKMKI--LSKNKEENNKKKNNTTNITC--MAAETSRLNNRSGGLFRYDALSYAQN 61
           SCW RLK+K+    +   +  + K+ T N+ C  +A   S    +  G FRYD LSY+QN
Sbjct: 14  SCWGRLKLKLPWPRRGGADRRRHKSLTANLDCKSIATTLSVPQPKPVGGFRYDPLSYSQN 73

Query: 62  FDEGLANADEEGSHRSFSARYAIPSQPP 86
           FD+G   AD +   R FS RYA P  PP
Sbjct: 74  FDDGCWRADGDAPSRGFSTRYAAPPPPP 101

BLAST of IVF0004515 vs. ExPASy TrEMBL
Match: A0A2P6PG70 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0233511 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 36/82 (43.90%), Postives = 42/82 (51.22%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
          +SCW RLK K+              T+ +        R     GG FRYD LSYAQNFD+
Sbjct: 15 LSCWGRLKFKL------------PWTSRLRRYTTTRQRSIGNPGGGFRYDPLSYAQNFDD 74

Query: 61 GLANADEEGSHRSFSARYAIPS 83
          G    DE+ S R FSARYA PS
Sbjct: 75 GWDETDEDSSKRGFSARYAAPS 84

BLAST of IVF0004515 vs. ExPASy TrEMBL
Match: A0A445KYI8 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_009209 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
          +SCW RLK+K+                     A  TS    +S G F+YD LSYAQNFDE
Sbjct: 28 LSCWGRLKLKL-------------------PWAKRTS--TYKSIGGFKYDPLSYAQNFDE 87

Query: 61 GLANADEEGSHRSFSARYAIPS 83
          G    DEE  HR FSARYA PS
Sbjct: 88 GWVEDDEESLHRGFSARYAAPS 88

BLAST of IVF0004515 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 2.20e-41
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 0

Query: 1   MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
           MSCWERL+MKILS+ KE N   KN+T NITCM  ETS LNNRSGGLF+YDALSYA+NFDE
Sbjct: 14  MSCWERLRMKILSRKKEGNINNKNDT-NITCMGGETSGLNNRSGGLFKYDALSYAKNFDE 73

Query: 61  GLANADEEGSHRSFSARYAIPSQPPTKKLG 90
           GLANAD EGS RSFSARYA+PS+PP KKLG
Sbjct: 74  GLANADGEGSFRSFSARYAVPSKPPAKKLG 102

BLAST of IVF0004515 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 7.08e-16
Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 2  SCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDEG 61
          S W+ LK KI S  KE    K  +                   G F YDA+SYAQNFD+G
Sbjct: 16 SIWKCLKSKISSGKKEGTTSKNEH-------------------GKFSYDAVSYAQNFDDG 75

Query: 62 LANADEEGSHRSFSARYAIPSQPPTKK 88
          LANAD+EGS RSFSARYA+ S+PP KK
Sbjct: 76 LANADDEGSSRSFSARYAVASKPPPKK 83

BLAST of IVF0004515 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 2.79e-15
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
          MS W+ LK KI  K +   +K ++                    G F YDA+SYAQNFD+
Sbjct: 15 MSIWKCLKSKISGKKEGTTSKNEH--------------------GKFSYDAVSYAQNFDD 74

Query: 61 GLANADEEGSHRSFSARYAIPSQPPTKK 88
          GL NAD+EGS RSFSARYA+ S+PP KK
Sbjct: 75 GLGNADDEGSSRSFSARYAVASKPPPKK 82

BLAST of IVF0004515 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 2.11e-13
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAETSRLNNRSGGLFRYDALSYAQNFDE 60
          +SCW RLK+K+L   +E NN          C+  +T  LN    G FRYDALSYAQNFDE
Sbjct: 14 VSCWGRLKLKLLLMKREGNN---------PCIG-DTKPLN----GGFRYDALSYAQNFDE 73

Query: 61 GLANADEEGSHRSFSARYAIPSQPPTK 87
          GL + DEE   R FSARY   S+P  K
Sbjct: 74 GLDDEDEELRCRGFSARYVSASKPLPK 86

BLAST of IVF0004515 vs. NCBI nr
Match: KAG2698660.1 (hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothetical protein I3842_07G165100 [Carya illinoinensis])

HSP 1 Score: 64.7 bits (156), Expect = 2.46e-11
Identity = 39/86 (45.35%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 1  MSCWERLKMKILSKNKEENNKKKNNTTNITCMAAET-SRLNNRSGGLFRYDALSYAQNFD 60
          +SCW RLK+K+               T     +  T SR+  + GG F+YD LSYAQNFD
Sbjct: 7  LSCWGRLKLKLP-------------WTQQRVRSPNTRSRVVGKLGGRFKYDPLSYAQNFD 66

Query: 61 EGLANADEEGSHRSFSARYAIPSQPP 85
          EG  + DEE   R FSARYA PS  P
Sbjct: 67 EGWDDDDEEVYQRGFSARYAAPSSKP 79

BLAST of IVF0004515 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 7.9e-05
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 41  NRSG--GLFRYDALSYAQNFDEG--LANADEEGSHRSFSARYAIPSQPPTKK 89
           NRS   G FRYD LSY+ NFD+G    + D+E  +R +S R+A PS P + K
Sbjct: 117 NRSSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAAPSLPVSTK 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR51.2e-2978.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1[more]
K7KJ144.3e-0646.34Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G090800 PE=4 SV=1[more]
A0A059BR024.3e-0642.05Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02166 PE=4 SV... [more]
A0A2P6PG704.3e-0643.90Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0233511 PE=4... [more]
A0A445KYI84.3e-0646.34Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_009209 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN60281.12.20e-4178.89hypothetical protein Csa_002688 [Cucumis sativus][more]
KAG7024589.17.08e-1650.57hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591707.12.79e-1547.73hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6608120.12.11e-1350.57hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG2698660.12.46e-1145.35hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothe... [more]
Match NameE-valueIdentityDescription
AT3G01430.17.9e-0548.08BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..90
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 4..87
NoneNo IPR availablePANTHERPTHR33168:SF46NHL DOMAIN PROTEINcoord: 4..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004515.1IVF0004515.1mRNA