IVF0004512 (gene) Melon (IVF77) v1

Overview


Name	IVF0004512
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	chr03: 20322892 .. 20333850 (-)
RNA-Seq Expression	IVF0004512
Synteny	IVF0004512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGCAGTCGCGGTGAAAAAATGGCGCGCAAGGGAAAGAAAACCAATAACCCTACTAGCGACAGCGACGAGGACGAAACTTTCTATTACCGGTATCCCTCCGCTGCCTCTTCTGCCCCGCCGCTGCCTTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACTAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATAGACAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTGCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGAGGGAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGCGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAGGCGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGGCGAAGATGATTAACCGAGCCTGTCTCTTTGGGAAGAGTTTGTAAAAGGTACGTGGTTTTTACTATTGTATTGTTTTTTTCTGCCGTTCCATTATATTTTGAACCTCTATTTCTGGTTGATTTTGGTGCATGATTTTTGGGAGGCATTGTTAGATGAGATAAAGCTTACAGAATTTAAATTTGGGCTGCCGGGTGCGATAAGTAATAATGAGTTATAGGTACGTAGTCTACATTCTGCTTCACGATAATGTCAGGAGTATTCAGGATTGGGATACTAACTGCCAACCTATGGCACTTGCCCTCCACCAATAGGTTAATAATTCAAACTACCCACCTCCAAATAGAAATGTTATGTTGAATTCACAGACTTTAGTTGGAGAGCTGAGATGTAATTAGAATTATTGGGGAATTGAAGACCGAACCGAAATGAGATCATAAGTTGTGAAAACAGTGAAAAAGAGGTTTGGATTGAAAAGTATCATATATGAATGAGTTTTAATTACAAATCAGCTCTAAAATGCTGAATCCAAACATTGGTTATTGATTACATTATATTACAATCTCATCCAATTACGGTCCACCGAACACCCAAGGATTTAGGTACTGTTGCTAACAGTATATGAGCCTAGGTACTGTTGCTAACAGTATATGAGCATGCCTTAGCAATAGCCGACCTTCACTGGAATTTGGAAGTGGTAATAAATACTCGATCTTCTAATTTCTCCTATTTTCTTTTAAGAGTTAAGGATTTCTGCAGTCAGAGAGTATAAGTCGCATATTCAATCCCTTGAGCATGAGCTTGTACTTCTGTACATTTAGGAATTCCCATATCATGATCTCGGCGTTTAATCCCAAAGGCTTGATTTCCCATGTGCCAAGACTTCTCCAAAGGATTCTTTGATCAAGCATTATTATTATCATTATTCTTTTTGAGGAGATATTTTTTGTATCAGAAACATATAAATAATTTCATTGATGGGATGAAATTACAAAAGAGCACATATGCTGCGAGAGATTGCAAAATACTATTCCATTGCGATATAAGAGAAGTAAGATTGTAATCACGAAAGTGTGGGGTGAATTAATACCAAGTGAAGGTTGTATACAAAAGATAATCGAAAAGTGAGTGAAGTCGGATTCCTTAACTTTGAAAGTACGATGGTGGCATCTGTTTCATATGAGCCAAAAGAGAACTCTTCAGTAAGATTATATGAAAAGTAAGGGTGGGGAACTTCAGAAAACCCAAGGGACTTGGGAAAAAAATCAGTCCAATTGACATCAATCAATAATGAGAGTGAAGTCATTACTTAAACCTTTAAAGTGGATACATGTTCCATTAGGCCTTGATCTCCTTCATTTTGCTGAACTTATGCTGGAGGTGTTGTTCAAGGTATTATTCTTTTTCTATCTTTTTCTGTGTTATGAGATTCTGTTTTGGCTGAGATGAATTTTGTTGGGATGATGAAATTTTTTTACATGCAACTGCTGAGATGAATTTTGTTGGTTGAGATTTAAGGTACAAGTAATAATGTTAAACTGTCTTTATATGTAATTTTAGCTTCAGTGTTTATATGGAATTGCCCTAAACCCGTATTAAAGAATTGAGCTTTAGTGTTTTTATATGTTTTGGCTGAGGTGAATTTAGTTTGAGGAATTGGAATTGTGTTTATATGTAAATTTGTAATATGGGTTGATAAAAATAATTCTTTTAAAGCTCAATTCTGTACTTACTCTCCCTCTCTTTTTTGTGTTATTCTTTGACCTATTTCTTACATTTTACTTTTTGTTTCATGATATTTGGCGGCTGTTATGTTATGATTTTTTTTTTAATGAACTGACTTTGCAAATGTTGAACTAACATTTTGGGGGTGGGGGGCTGTGGCTGTTTTCATATGCATATAAATTTTGATTTAAATTTTTAACAAGTTCTACATTATGAGGAAATAGTGACTTTGTTTCGTTTGAATTTTGAAGTCTAGAAACTGAGATTAGTTGACCTAAATGTTTGGTTTGTGTCGTGAATTATGTATGCCCCTTTTCCTTTCTAGTTTATTGATTTTCTACTGTATTCCAATTTTAAAATTACATTCTAAATGTCACAAAAATCATCCGAACAACATTGCGTAAATGAGGTTGTCGAAATTGATGGATTAAGAAGTGAGGGGCCATGGTCAGACAAGAGTGAAACTATATTTGGTGATTTAATGGATGAAGAGCTTGTAAAAGGCAATAGATCAACCACAACATTTACAAATGCTAAATGCTAAATCGACCAACTAAATGCTAGTACGATATAGTTATACCAATGATCAATTGAAAAACAAAGTTCAATAAATTAAGACAAATTTGCAAAAACTTCACAAAGATATTGAGTGAAAAGACTGGAAATGGTTGGGATCCATTATCAGGCTCTATCAATTTGGAAAAGGAGCGATGAACAACTTTTTAAGGTATAATATTAGAGTGTGAGTGTTTTTTTTTCTTTTTCTTTCTATTTTTGATCATCTATTGAATTATGGTTGGTTTTATATCGTGTTGTGCTACTACTTCTTACAGAGCTAAAAAGTTTAAAAAAAGTGGTTCAACATCATTTTTATCTTCAAAATCTAAATTTATAAGTTTTGTTTATGGGCAAACATTTACACCTGTGTCAATACTATCTCCAAAAATACTCATTGGCTTTTCATAATGTGGGTAGCCACTTTTTTTTTTGAACTTTTGAGCCTCTCTTATTCACCTGGAAGTAGCGGTTCGGTTTGAAGCTAGAACCGTATCAAACCGCAAAATGCAAAAAAAAAAATCTCATATGAAACTAAATTGCTCATATGTGCAAACCGAACCGCTTATGCATAAGTATTATAATCGAAATCCTTTATGAACATTATACATAAGATCTTGTACTTCATTTTAAACGATGGCTTTCAAATTTAAACGATCGTGTAGATCATGATACATGATCTCAGGCCTTAGTTGCACCGAGATGCCCCGGGATGAAAGAATTCTGCCTCTAATTCATTCGATTTTGGGTATATAATGCCCTAAGATGAAATAATTTTTCAAATAGTTATTGGATCTCGGGCCTTAGTGGCACTGATATGGCTTGGGATGAAATAATTCTGTCTTTATTTTATTCGATCCCAGGTATACATTCCCCCGATATGCCCTGGGATGAAAGACTTTTGTCTTTAGTTATTCGATCTCGGGCTTTAGTGGCACTGAGATGGCTTAATGTCTGTATTTATATATTTAATTTTTTTTTTAATAAAGCAGTTTAGTTCTGTTTTAGAATCGGTTTAATGTCTTAAATCGAACCAATTTCAATTTCAACAATCTCATTGATGATTTTTGTGACATCTAGAATGTAATATTAAAATTGGAATAAAGAAGAAAATCAATAAAAGTAGAAAGGAGAAAGGGGCATAGATAATTAACGACACAAACCGAACATTTAAGTCAACTAATCTAAGTTTCTAGACTTCAAAATTCACACCCATCCTAGTTTTTAAATGAGGCCATTCCACTACAATACATATGAAACAAAGTCACTATTTCCACCTAAAAATTTTCATCATATGAAAAAAGCTCCTGCCCCGGTTAGTTCTTTTAGTTCCAACATCTGCAAAAATAGTTCATAACATAACAGTCATAAAAAATATCATGAAACAGAACTAAAGAAATGGGTCAATGATCTCATTCAGAAAACAAACATTTTCCTAAGGAAGTACACGGAAAAAGAAAGGGAGAGTAAGTACAGAATTGAGCTGTAGTACAATTATTCTTCATCAACCCATATTACAAAATTACATATAAACACCAAAACATATAAACGCTAAAGCTCAATTTTGTAATATGGGTTCAAGGTTGTTCCATAAGTAACACTAATATTTATACTTTAAATCTCAGCCAACAAAATTCATCTCAGTAGTTACCGATAAAATTTCATCATTCCCAATAAAATTCATCTTAGCCGAAACAGAATCTCATTACACAAACAAAGATAGAAAAAGAATAATACCTTGAACGACACCTCCGGTACAAATCAAGAAAAATATAGAAACAGAGAGATCAGAGGGGAGAAACAACACATACCTCCCTAACTATAGCCAAACGTAGCCCTAGCCGGAGAGAATGGAGTCGGAGAACGAAGAGAGAAGACAGCCAGAGAATGAAAAGAAAATTTGGAGAGAAGAGAACAAGAAATGGAACAAGAGAAACCTTTTTTTATTCTCATGAATTTCTAAATGAAATCAGAAACGTTTCTAATATTTTGAGAACGAGAAACAGGGAACGTTACCAAACACATTTTTTTTCTTAGAAAATTAGAAACAAAAAACGGAAAAGTTACCAAACATGTTCTAATTTTTTCTAGAGTCCTGACTCTTATTGGGCAACTTAGAGATGGAAATCCCCGTCATCCTCATCAGATCTAAAAAATTACCATGCAATTTAAATCGCAATCCAAGAACCTAAGTTGAGGTTTCACATTATCTAATCATGTAAAATCCATATTTGTGCAGAGCTTAATTATAGAGGTTCAGAATATGCATATTTGGTCATCGTCCGGCCTGGCTCTCTTTTCTTTTAATTCTTTCTTCTTGTGATAGCCTCTGTCTTTTCAAGGAATCTGATGTGCTACCTTAGTGAAGGTTGCAACTCTTCACCGTGAGTAGGAACCCTAGCTTGGTAGTAACTATTTAATGTTGATTTCTACTAATTTCTCTCATTAGCATAGATCAGGATGTCTCAAGAATAATATTCAGAAGGCATTCTTAGATTTTGCCCATTCTGAACCTGATTTGCACTTACTGTAGCGAAGGTGTGCCATGATCCAATTTTTTGGCCTCTGCTAGTGCTTTGTTGTCCTTGCTTGTAGGAAAAGGTTTGTTCAATTGAATGATAGGTATATCATTGATTAAATCTTTATTGGGAGTATAGTGGTCAGTGTAAAAGGAAAAAAGGTTTTCTATATTTGATTGGGATGGCATATAAAATTATAAATAAATGATTATGTAGATTGAGACTTCTTAGATGAACTCTTGGAAATTAAGGGTTTTAGGTAAGAAATAAAAATAATGGATTTACAACTGGTTTCGCGTTCAACAAAATAACTTTGGCCAAAACTATATTCATAAAGGACCAAGGGAAAATTAGTTTGAAGTCCTCTTTCTCTTCATGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGAAGTTGAAGTTGAAGTTGAAGTAGGCTTCTTTAAAAAACCTTGATGTTATGAAAGCTTTATTATTGAATTGTATATTTTAGGATTTCATTTTACCCGCTCCAATTTGCAGAAGTGAAGCCATTTTTAGGAGTGGCAATGACATAAGCCTTTTTTCCCCTACAACCTGCAAATAGTTGAGAAGATTAAACTTTATATTAATATTTAGTAGAGGAAGTCGGCCACGCGGCTGGGTCCTTTGATCACTTTCCTTAGGTACTAATCAGCTATGACAGTTAATAGTTGAGAAGATAAAAAACAAAGTTGAGTGTTAGAAATAATGGGCTTAGGTCATGTTGAAAGCCCATGGGTAGCTAAGATTTACTTTGCCCTAATTTTTATTCTTTTAATTAAGCTCGTGTTGCCTATAAATATTTTCTCCCTCTGTACCTCTATTATTATTGAAAAAAATAATAAAAATAAAAGTATCGTAGTTTTTCACCCAGTACTTGCCTTTCCATGTAAGTTTATGTGCTCTTTGTCTCTACTTTCAATGTTGAGAAATTATAAAATACCTTTTTTCAGGAAGAGTGGGAAAATGAGCTTAGCTTATTGTCATGCCCCAAATATGCCCCATGAAAGTCCAAAATCTTTTGCGAATTAGGCTCTCTAGCATAGGCAAGAGGGGTTAAATCATGCCATGTAACATCAAAAGGCACCATGCGCGGCTAGCATGCGCGCTCGTGCCATGTCGAGTGATGATGCACAACTAAGCTCATGGCCAAGTGTGCAGGCGTGCACGCGACCATGTAGACGCAAGTGTGCACGACCAAGTAAGGCTGATGGTCGAATGGCGCACATGTAGATCCACCAGAGATGGAGACAAGAAGCAAGCATATGGACGCCTAGTCAGCAAGCACGTTAACATGTAAAGCAAGCACAATGACACACGAAAGGTGTCATCTGTCAAGGCCGAGAAGTGAAGTGCCATGATGTGATCTTGGAGAACGATACATCATCCAGACATGAAGATTAGTGGGCTAGCATGCCAAGTTGAACCTTAGGCAAGAAGGCAAGCTTTAATGCCATTTGTGGTGTTAGTGACATGCTTAGTGGGGCAAAATGGGGCCCCAGACTATGACCGCAGAAGTCGGGGTTCCGTTGCGAATTTGGAAGAGTGGCTTTGGAGTTAGATGCATATTGATGAGATATGCAAGCACGTCGAATTTCTTATCTATTGCAGTACAAATGGGTGCTCTACATTGGTGAATCGTTTGCACAATTAATGTGCAAGGGTGGAAAAAATGCAAGAGTGGAGAAAATGTAAGGGTTCAAAATGTACTTTAGGGGAGGCTTTCCACCACCCCTGGCCCCAGTGAGCTATCCCATGACACACTCGTGTGTCATGTCGTGTGCGAGTGTCGTTGGAGGAGTGTTTCAGGTAACTTCCAGTGATGAGTAACTCGATGACATTGAGAGTGTGTCGACATTGCGCCTTCTCGAAATGGTTGGAGGTTGCAATATAGGTCAGGCTCAATATCCTTAAACGACACATTATTGTTGCAAGTGTAGTCAAGCCCCAATAATGTCTAAATAGTTAGATGTCTGTAAAGTCTTAACAAGCGATAAGTACAAATGAGTCGAGGCCCAGTTCTCGATAAGTGTGCTCTTATGTGCAGTGAAGGTCAATGTCATCGTAGGGTTCGAAATGACATCCCAAGTTACTAGTGGGCACAGATAAGCAACAGAAAGCTAGTATTGACCCAATAGATGTCAATACTCATCCTGTTTGGCAAGTTAAGCATTCCTTGGCTCAAAGTGCAACAAGAACTATCTTGAAAGCTCTCAGTGGACCCGATAAGCTAGTAATGAACTAGAATGCTGCAGGAATGGTCTTGGAAGCATTTGATGGTCCTGTTAAGCTACTTACGGCAAAGTGAGCAAGAGAAATCATCCGATAAACCTTGTAAGCTAGTTCTAGTTTTACTTAAGGTCATGACTTATTCTAGAAAGGTCCCTTATCATGGGACGACCTAGAGGTCAAGAACCTAGATTATAAAGTTACTGTACGATGACCTTGGCTGCATATATGGGCAAAGTTGAGCCTCATGGCTTGCTTAGAGTAGAGGCAAGTGGGCTAGAGTTGCATATTACGGAAAATGCATGTACAAGCAACATGTATGGCCGAATAAAGTTCAGTTCCGTATGAGCTCTAGCTTCAAAGAGTCGAGTAAAAAGTAGAATGGGACTTGAGTTTCCCTTAAGGTTGACCATGAACGTGTATAATGCCATGGTACCACATGGTTTAAAAGTATTGATCATCACACCTAGCGCACGTGTGCTCTTGACCAATGTGCAGGACCCTTTGGACACCCGTTGAGCAGACTTCTTGAGATAGTGCCACAAGCCTCTCAAGTGTCTTGAAGCTTTTTAAAAGGATAGACAGTGCTATGCCATGCTAGCATGAACGAGGAGGCTTCAGATGCATCTTGAAGGCCCCATATAGCTTTAGGCCATGCTACTCTACATGCCCAAGGCCTAGGTAGCACTAGAAGGCCTTAGAAGGTGCAAGACTATGTGTCACGGGGGTGATTCCAGACTATGGATTTTTCGCCCTTTAACCTCGTGCGGTTTCCCTTGACCAGCAATGCACCCATAAGGACACTTGGAATGCTAGATGAACTCCCAAAGGGCATTTTCCTCACACACATACCTCATGGCTCAACTAGAGAGTAGGGTAGGAGAGTAGCACGTATGTATGGTGGAAATATAGCACAGTTTATTCGTTAAAGCTCTATCAAAACCACAGTTTACAAGTTTGAGATTTGGAAGTTCCCAGACATGGGAGAGCTTCCATACAAGATGTGACCTAACAAATGCTTGAGATATGACTCCCATGGTTGTTCGGAGGAGTGAGTTTGGGAGAGAAAGTGGGTAAGGGGGGGCATAATCGCCCACTAGCCATAAGAATAGGGTCTTTCTCTCATGTTCTCTACAACAATCTTCTACATATTACGATAGTGGAGAGCATGGTCATCCCCTTTCCCTGTTAATAGTACACACTTCTCACTTAACATAGTGTTAGGACCACCTTTCTATTATTTAGAATATAACCACACAGGATCTCTATGAACATGAGTCTTCTCCATCCTTTAAAATAATTATGCTTGTTAGGTTCTTTGGGCCAAGCACGCTTGATAATATTCTTCTGTTATCAAGTGTCTCACAAGTCATGTTGTCATGTTGTCAAGCTCCTGATGAAATGCATTCCCTTCTGCCATGGACCAAGCTTGCCTCACCTTGAGCACATGCATGTGTTGTCTCATGGCTCATTGTCTAATGCGCACCTAAGACACCCGCGTGTCAGCTTAACATTGCACTTGCTTGTGGAGTGTCGCCATTGTGGTTGGCACTTGCGCACACGTTGTTGCATCTGCATGGGTGCGCACACTCAAGTGCCTGTGTGTCTCATGTCCTTCTGTCCATGGGCATGTCTTGGCACTCCTTGATGCCTTATGTGCACCAAAAACCCATGTTAACCTTCATGCATGGGGTGTAGGCCTCTGGCCCATGCTAGCTCTATGTCACACCTGTGTGCACATATGCCGCACGCCTCGTGGGCACTTGCAAAGTCTTCTATGCTAGTGACATGTTGATGTCACTCATCTTGCTTTTGCCTAATTGTTGTCTGTGCACATGCCATGACACGGCTGCCTGCAAGGCATTGGCGATGTGTCAATGCTTGAGTATTGAGGTCCTGACACTATGCCAATATATGCTAGAAGGTTCCAAACCTCTCGGGAAGGCTCTAGAACATGTTGGAGTGCTCGACAAGGTCAGACACTACAGTGTTGATGAAGGTCTAGAAGATCCCATGAGCGTTTAGGTTTGTCTAATAGGCTTAGAATATGTCATCTAATACTAGAATGAGCCAAAGTGTACCAAGAAGGCGTAGAGAGAACTATGACCAACCCGCTAAGGGTGGTTAAGAGGCCCCTATGTCGGTTGGGGCTTGTCTATAAATAGCCCTAAGGGACTCATTTGCAAGCATCCACGAGAAGCATCAATAAAGCTCTCTCAAACATTCACTCAAACCCAAACCCACTCACTCTGACTACTCTCTTTCATGAATTTCTTCATGCCCCAGCAAGTCAAGAACTTCTAAAGGCTTGCTTCGTTTCTCCTTTGATAGCAAAGGCACCAAATTACTTTGTTTCTCCTTTGATAGCAAAGACACTTCAGTGCCGCACGTCTAATTGCCTGAAATTAGCAACTACGTGACATTATGGTTGTCATCACTAGTATTAACTTCCTATCTTCAATCAATAATTCTCTTTGATAGGAAGAACGTTTTAGGACCCGTTTATTGGTTTCCAATCTCTTTCTTACATAGTTCGATGATTAGTTCACATTTTGCAAAGTCTAGCAGACAAGTCCTTAAAGACACAACGATAATTTTAAGTATACATCTATATAAAGATCAATTTTAACTATTAAACTAATAAGAAGATTCATTTTTTTTCTATGGTAGGTTAGCCGCAGTAGAAGCGATTGATGCTTTCAATGCTCTTGTGAAAAAGGCCCATGGATGGTTTCCGCTCCAAGTTGGTGTGCCTTTGTCGTGCTAATTCTGTCTTGATCTTTTGTGAATTTGCTTGAACATGTTGGGGGTGGATGTTAAAGTCCTTCAGTTGCAAATACCTCTAACATTGTTGAGTATGAGTTCTATTGGTCATCCTTTCAAGAAAGGAAAAGGTGATATTATAGGAATTCATTATCGAAGGCTTATGACTTATTTGAAATGAGAGAAATCATCATACTTTTGAATATAGAGAAACTGAATTCACACAATTCTTGATTGTCCTTATGTACACTTTATATGTGTTAGTGTAAATTAAGCTAAGCTTTTTTGTTATTACAACCGTACTTATCTTATTGCAGACAAATGCATAGCTTCACGAGATCTCATTTCCTTTTTTGTAA

mRNA sequence

CTTTGGCAGTCGCGGTGAAAAAATGGCGCGCAAGGGAAAGAAAACCAATAACCCTACTAGCGACAGCGACGAGGACGAAACTTTCTATTACCGGTATCCCTCCGCTGCCTCTTCTGCCCCGCCGCTGCCTTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACTAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATAGACAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTGCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGAGGGAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGCGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAGGCGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGGCGAAGATGATTAACCGAGCCTGTCTCTTTGGGAAGAGTTTGTAAAAGGTTAGCCGCAGTAGAAGCGATTGATGCTTTCAATGCTCTTGTGAAAAAGGCCCATGGATGGTTTCCGCTCCAAGTTGGTGTGCCTTTGTCGTGCTAATTCTGTCTTGATCTTTTGTGAATTTGCTTGAACATGTTGGGGGTGGATGTTAAAGTCCTTCAGTTGCAAATACCTCTAACATTGTTGAGTATGAGTTCTATTGGTCATCCTTTCAAGAAAGGAAAAGGTGATATTATAGGAATTCATTATCGAAGGCTTATGACTTATTTGAAATGAGAGAAATCATCATACTTTTGAATATAGAGAAACTGAATTCACACAATTCTTGATTGTCCTTATGTACACTTTATATGTGTTAGTGTAAATTAAGCTAAGCTTTTTTGTTATTACAACCGTACTTATCTTATTGCAGACAAATGCATAGCTTCACGAGATCTCATTTCCTTTTTTGTAA

Coding sequence (CDS)

ATGGCGCGCAAGGGAAAGAAAACCAATAACCCTACTAGCGACAGCGACGAGGACGAAACTTTCTATTACCGGTATCCCTCCGCTGCCTCTTCTGCCCCGCCGCTGCCTTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACTAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATAGACAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTGCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGAGGGAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGCGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAGGCGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGGCGAAGATGATTAA

Protein sequence

MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIVEKKKAKKASYFSDESGEDD

Homology

[Close]

BLAST of IVF0004512 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.5e-72
Identity = 164/267 (61.42%), Postives = 191/267 (71.54%), Query Frame = 0


Query: 6   KKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           KK     SD +ED+TFYYRY S A  APP PS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVA--APP-PSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRR-GGVGARHEEDWGSD------VGEAFEDDNWASVVDGDADQRLLTGG 245
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENIVE----KKKAKKASYFSDESGEDD 260
               E    K+K KK SYFSDES ++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of IVF0004512 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-42
Identity = 102/217 (47.00%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPK-RGRRGGVGARHEEDWGSDVGEAFEDD------------NWASVVD 238
           PKN LG RE P+ K + ++  V    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGGENIVE---KKKAKKASYFSDESGEDD 260
                R  TGG +  +   + + KK++YFSDE    D
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of IVF0004512 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 100/217 (46.08%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPK-RGRRGGVGARHEEDWGSDVGEAFEDD------------NWASVVD 238
           PKN LG RE P+ K + ++  +    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGGENIVE---KKKAKKASYFSDESGEDD 260
             +  R   GG +  +   + + KK++YFSDE    D
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of IVF0004512 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41
Identity = 103/218 (47.25%), Postives = 132/218 (60.55%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 238
           PKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 239 IVEKKKA-----------------KKASYFSDESGEDD 260
              K+ A                 KK++YFSDE    D
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEELSD 218

[Close]

BLAST of IVF0004512 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 3.0e-41
Identity = 100/219 (45.66%), Postives = 133/219 (60.73%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 238
           PKN LG RE P+ K  ++       EE+   +  E  ED+     +D  +        + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE--IEEVEESEDEGEDPALDSLSQAIAFQQAKI 181

Query: 239 IVEKKK------------------AKKASYFSDESGEDD 260
             E+KK                   KK++YFSDE    D
Sbjct: 182 EEEQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of IVF0004512 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 6.5e-140
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDD 260
           EKKKAKKASYFSDESGEDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of IVF0004512 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 6.5e-140
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDD 260
           EKKKAKKASYFSDESGEDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of IVF0004512 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.7e-127
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RKGK+  NP SDSD+DETFYYRYPSA SSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GE FEDD WASVVDGDADQRLLT  EN+V
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDD 260
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of IVF0004512 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.8e-127
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK K+  NP SDSD+DETFYYRYPSA SSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLT  EN+V
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDD 260
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of IVF0004512 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 7.2e-123
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGK+T NP SDSD+DETFYYRYPSAASSAPP PSSSQ   SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPP-PSSSQ---SSQAHSHSSIKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLTGGEN+ 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240

Query: 241 EKKKAKKASYFSDESGEDD 260
           E+KK KKASYFSDES ED+
Sbjct: 241 ERKKGKKASYFSDESDEDE 254

[Close]

BLAST of IVF0004512 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 509 bits (1310), Expect = 1.22e-181
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDD 259
           EKKKAKKASYFSDESGEDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of IVF0004512 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 487 bits (1254), Expect = 4.20e-173
Identity = 247/259 (95.37%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240

Query: 241 EKKKAKKASYFSDESGEDD 259
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESDEDD 259

[Close]

BLAST of IVF0004512 vs. NCBI nr
Match: XP_031739837.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745445.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745456.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745622.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745721.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637133.1 hypothetical protein CSA_021509 [Cucumis sativus] >KAE8637376.1 hypothetical protein CSA_004469 [Cucumis sativus] >KAE8637383.1 hypothetical protein CSA_004476 [Cucumis sativus] >KAE8637476.1 hypothetical protein CSA_018827 [Cucumis sativus] >KAE8637589.1 hypothetical protein CSA_021598 [Cucumis sativus])

HSP 1 Score: 479 bits (1232), Expect = 1.02e-169
Identity = 247/261 (94.64%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHS--STKSGGG 60
           MA KGKKTN+PTSDSDEDETFYYRYPSA SS P LPSSSQSHFSSQSHSHS  STKSGGG
Sbjct: 1   MAPKGKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGG 60

Query: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFS FGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 240
           PKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN
Sbjct: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKAKKASYFSDESGEDD 259
           IVEKKK KKASYFSDES EDD
Sbjct: 241 IVEKKKEKKASYFSDESDEDD 261

[Close]

BLAST of IVF0004512 vs. NCBI nr
Match: XP_031745992.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637587.1 hypothetical protein CSA_004586 [Cucumis sativus])

HSP 1 Score: 474 bits (1220), Expect = 8.56e-168
Identity = 246/267 (92.13%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSH--------SHSS 60
           MA KGKKTN+PTSDSDEDETFYYRYPSA SS P LPSSSQSHFSSQSH        SHSS
Sbjct: 1   MAPKGKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHFSSQSHSHSHSS 60

Query: 61  TKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF 120
           TKSGGGSGGLVPSKST+YVSNFDYSLTNSDLHTLF  FGKIARVTVLKDRQTRKSRGVAF
Sbjct: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFFNFGKIARVTVLKDRQTRKSRGVAF 120

Query: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDG 180
           VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DG
Sbjct: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDG 180

Query: 181 HLSYECPKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRL 240
           HLSYECPKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRL
Sbjct: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRL 240

Query: 241 LTGGENIVEKKKAKKASYFSDESGEDD 259
           LTGGENIVEKKK KKASYFSDES EDD
Sbjct: 241 LTGGENIVEKKKEKKASYFSDESDEDD 267

[Close]

BLAST of IVF0004512 vs. NCBI nr
Match: XP_031745314.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637394.1 hypothetical protein CSA_004754 [Cucumis sativus])

HSP 1 Score: 473 bits (1218), Expect = 1.73e-167
Identity = 246/267 (92.13%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSH--------SHSS 60
           MA K KKTN+PTSDSDEDETFYYRYPSA SS P LPSSSQSHFSSQSH        SHSS
Sbjct: 1   MAPKEKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHFSSQSHSHSHSS 60

Query: 61  TKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF 120
           TKSGGGSGGLVPSKST+YVSNFDYSLTNSDLHTLFS FGKIARVTVLKDRQTRKSRGVAF
Sbjct: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAF 120

Query: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDG 180
           VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DG
Sbjct: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDG 180

Query: 181 HLSYECPKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRL 240
           HLSYECPKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRL
Sbjct: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRL 240

Query: 241 LTGGENIVEKKKAKKASYFSDESGEDD 259
           LTGGENIVEKKK KKASYFSDES EDD
Sbjct: 241 LTGGENIVEKKKEKKASYFSDESDEDD 267

[Close]

BLAST of IVF0004512 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.8e-73
Identity = 164/267 (61.42%), Postives = 191/267 (71.54%), Query Frame = 0


Query: 6   KKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           KK     SD +ED+TFYYRY S A  APP PS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVA--APP-PSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRR-GGVGARHEEDWGSD------VGEAFEDDNWASVVDGDADQRLLTGG 245
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENIVE----KKKAKKASYFSDESGEDD 260
               E    K+K KK SYFSDES ++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of IVF0004512 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of IVF0004512 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of IVF0004512 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 69  VYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQM 128
           ++VS      T+  L  LFS FG+I    +++D +T++ +G  F+ F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 129 HGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 163
            GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

[Close]

BLAST of IVF0004512 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-08
Identity = 41/124 (33.06%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 25  YPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLH 84
           +PS  +S+  LP+     F     S  +           P  S + V N  +S +   L 
Sbjct: 8   FPSFVASSSSLPNYRNLRFPKIKASLFN----------YPLASKIMVRNLPFSTSEDFLK 67

Query: 85  TLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIAT 144
             FS FG+IA V ++KD   ++S+G AF+QF SQDDA  A + M  ++ NGR++   IA 
Sbjct: 68  REFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 121

Query: 145 DNGR 149
              R
Sbjct: 128 PGKR 121

The following BLAST results are available for this feature:

BLAST of IVF0004512 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	2.5e-72	61.42	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q499V6	2.1e-42	47.00	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q9CZ96	1.3e-41	46.08	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]
Q5SP50	2.3e-41	47.25	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]
Q8TBF4	3.0e-41	45.66	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]

BLAST of IVF0004512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	6.5e-140	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	6.5e-140	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	1.7e-127	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	2.8e-127	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	7.2e-123	90.35	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of IVF0004512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456528.1	1.22e-181	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
XP_038883985.1	4.20e-173	95.37	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]
XP_031739837.1	1.02e-169	94.64	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >X...	[more]
XP_031745992.1	8.56e-168	92.13	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >K...	[more]
XP_031745314.1	1.73e-167	92.13	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >K...	[more]

BLAST of IVF0004512 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	1.8e-73	61.42	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	2.5e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.5e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	1.1e-09	34.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G20030.1	4.5e-08	33.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 68..141 e-value: 1.2E-5 score: 34.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 68..141 e-value: 9.0E-25 score: 98.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..139 e-value: 1.6E-21 score: 75.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 67..145 score: 18.973166
None	No IPR available	GENE3D	4.10.60.10		coord: 154..196 e-value: 2.2E-5 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 13..259
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..142 e-value: 1.0E-27 score: 98.8
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 13..259
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 66..143 e-value: 6.62813E-40 score: 131.284
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004512.2	IVF0004512.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding