IVF0004468 (gene) Melon (IVF77) v1

Overview


Name	IVF0004468
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase ATRX
Location	chr05: 15317147 .. 15319164 (+)
RNA-Seq Expression	IVF0004468
Synteny	IVF0004468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTTTCTTTCTTGTTAAAGAGAAGAGAAAAGAAAAGGGATCCATTAAATACTTCTTTCTTGGCAGGCTAGATGGAAGAACTGAGAGTTCCGAAAGACAGAAGATTGTTGAGAGGTTTAATGAGCCTCTAAATAAGAGGGTAAAATGTACCCTGATATCAACTAGAGCTGGATCATTGGGCATCAATCTTCATTCTGCTAACCGTGTCATTATAGTGGATGGTTCTTGGAATCCAACTTATGATCTTCAGGCTATTTATCGAGCTTGGAGGTAGTTAGTTATCTTGTTCTTTTTTCTTCCTACTGAAGAATATGATAGCTTATGAAAATTCAATTGACCCTATCGGACTTGGATGCATATTTTCTGTTTATAACCAAAAAGAATTTTTCAAACGGGCATGCCATGGGGAACTTGGGTATTTTCACCAGGAACTATTTTGCTGAGTTTGTGAACTATCCTTCATACGATAACCTTCAGCATCTAGAATTAGTTCTAACTTGTTAGTTAGCAATGGATCGAAGAAAGAAATTCAAAGTTCTTAATTTTTATTGATATAGTCTGCCTGATAAAATTAGCAATGAACGAAGAAAAAATATTGAAGTTCTTAAATTTTTATTGTAAGTTTGCATGACATATAGAGGATGCATTGGCCTCCTTTATATGCCATGCTATTTTTCACAGTAGGTTATGGAAGTTTACTTTATTGTATTTCTTAGGCATGATACAGCCATAATCTATAACCCTAAAATAGACCTGCAGTAAGAAAAGTCAAAAAGAAAGAAGTGTACAAGTGAACTACTAAGATGCAGGAAATAATTGCAGATTCTCGAAGGTAATGACATAATATATGACTAATGGACCTAAAGGAGAGGGATGACCGGGTGCGATCATACCAGCACTAATGCACCGGATCCCGTTAGAACTCTGCAGCTAAGCGTGTTAATACTAAGTCGGATGACCACTTGGGAAGTCCTCGTGTTACATCCCTTTTTAAGGAGAGGGATGACCCCATTCTTTAACACCTCAACATGTCCTGCAAGGATGGTGTGAAGAAATAATTTATATTTCTGTTTTGAAGCTAAAACCATTAATAGGCTTTTAAATGTGATCTCAAATTTCATGAACTTTCAAACTTTTTTGTATTATTTTTATAAATGATGGAACGTGTACCCTCTTGTCATTTACTTATATGAAAATAATGGAAATGTTGATTTAGCTTTCTAATTTTTGTTGACAGTTGCATCAATTTTTACCTCATCTCTGTCTCTAGATTATTGTGGACATGATATCTTGATTTATTTCTTTCTTTTGTTATCAATGAGAATTTTTTTTTCTCTTTTGTTACATTTTTCTCACTCGTATATATATATACATATATATATACACACACATGCTTGCACACGCATGCATATAAACATATTCAAACATTTAGTTACTAGTTCACTATCGCTCTTCCCCATCATTATTCTTCAACAAGAGCCACTCTTAACTTGGTAGCTAAATTTCATAGTGACCACTAAAACTTTGTTGTTTAATATATTTCAATTATCATAATTTTATTTTTTAACCTGCAGATATGGCCAAACAAAACCGGTGTTTGCTTACCGATTTTTGGCGCATGGAACAATGGAAGAAAAAATTTATAAGCGTCAGGTATGATAAAACATTTTCTTACATTTTATGATTGCAGATGCAGTTTCTTTTATGGACTTGAATTTGATTGAGAAGTAAATTTGATAGGTAACGAAGGAGGGACTGGCTGCTAGAGTTGTTGATCGCCAACAGGTATATCGAACTATTTCTCGGGAAGAAATGTTGCATCTTTTTGAATTTGGTGATGATGAGAGTCTTGAGGCTTCCACTGAGTTGGACCAAGGAAATGGGCATACATCCCACCAGATTATGACTGGGCATCAAGGAAACGTGCTGAAGCAGAAAGGGCCTCTTTCCCATGGCAATTGTTCATCCGACAAGTTAATGGAAACTTTACTTGGGAAACACCATCCAAGGTAG

mRNA sequence

ATGAAAATTTTCTTTCTTGTTAAAGAGAAGAGAAAAGAAAAGGGATCCATTAAATACTTCTTTCTTGGCAGGCTAGATGGAAGAACTGAGAGTTCCGAAAGACAGAAGATTGTTGAGAGGTTTAATGAGCCTCTAAATAAGAGGGTAAAATGTACCCTGATATCAACTAGAGCTGGATCATTGGGCATCAATCTTCATTCTGCTAACCGTGTCATTATAGTGGATGGTTCTTGGAATCCAACTTATGATCTTCAGGCTATTTATCGAGCTTGGAGATATGGCCAAACAAAACCGGTGTTTGCTTACCGATTTTTGGCGCATGGAACAATGGAAGAAAAAATTTATAAGCGTCAGGTAACGAAGGAGGGACTGGCTGCTAGAGTTGTTGATCGCCAACAGGTATATCGAACTATTTCTCGGGAAGAAATGTTGCATCTTTTTGAATTTGGTGATGATGAGAGTCTTGAGGCTTCCACTGAGTTGGACCAAGGAAATGGGCATACATCCCACCAGATTATGACTGGGCATCAAGGAAACGTGCTGAAGCAGAAAGGGCCTCTTTCCCATGGCAATTGTTCATCCGACAAGTTAATGGAAACTTTACTTGGGAAACACCATCCAAGGTAG

Coding sequence (CDS)

ATGAAAATTTTCTTTCTTGTTAAAGAGAAGAGAAAAGAAAAGGGATCCATTAAATACTTCTTTCTTGGCAGGCTAGATGGAAGAACTGAGAGTTCCGAAAGACAGAAGATTGTTGAGAGGTTTAATGAGCCTCTAAATAAGAGGGTAAAATGTACCCTGATATCAACTAGAGCTGGATCATTGGGCATCAATCTTCATTCTGCTAACCGTGTCATTATAGTGGATGGTTCTTGGAATCCAACTTATGATCTTCAGGCTATTTATCGAGCTTGGAGATATGGCCAAACAAAACCGGTGTTTGCTTACCGATTTTTGGCGCATGGAACAATGGAAGAAAAAATTTATAAGCGTCAGGTAACGAAGGAGGGACTGGCTGCTAGAGTTGTTGATCGCCAACAGGTATATCGAACTATTTCTCGGGAAGAAATGTTGCATCTTTTTGAATTTGGTGATGATGAGAGTCTTGAGGCTTCCACTGAGTTGGACCAAGGAAATGGGCATACATCCCACCAGATTATGACTGGGCATCAAGGAAACGTGCTGAAGCAGAAAGGGCCTCTTTCCCATGGCAATTGTTCATCCGACAAGTTAATGGAAACTTTACTTGGGAAACACCATCCAAGGTAG

Protein sequence

MKIFFLVKEKRKEKGSIKYFFLGRLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEMLHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLGKHHPR

Homology

[Close]

BLAST of IVF0004468 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 4.1e-65
Identity = 134/187 (71.66%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            R+DG+TESSERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRVIIVDGSWNPTYD
Sbjct: 1172 RIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAI+RAWRYGQ KPVFAYR +A GT+EEKIYKRQVTKEGLAARVVDRQQV+RTIS+EEM
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM 1291

Query: 144  LHLFEF-GDDESLEASTELDQGN--GHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMET 203
            LHLFEF  DDE  EA TE+ + N  GH++       Q  +  +K  LS      DKLME 
Sbjct: 1292 LHLFEFDDDDEKSEAVTEISKQNEAGHSN----LVEQAILWTKKATLS--RVGGDKLMEN 1351

Query: 204  LLGKHHP 208
            LL +H P
Sbjct: 1352 LLQRHGP 1352

[Close]

BLAST of IVF0004468 vs. ExPASy Swiss-Prot
Match: Q61687 (Transcriptional regulator ATRX OS=Mus musculus OX=10090 GN=Atrx PE=1 SV=3)

HSP 1 Score: 156.0 bits (393), Expect = 4.7e-37
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDG T +  R+K  E FN+  N R +  +IST+AGSLGINL +ANRVII D SWNP+YD
Sbjct: 2068 RLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYD 2127

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            +Q+I+R +R+GQTKPV+ YRFLA GTME+KIY RQVTK+ L+ RVVD+QQV R  +  E+
Sbjct: 2128 IQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNEL 2187

Query: 144  LHLFEFGDD 153
              L+ F  D
Sbjct: 2188 TELYTFEPD 2196

[Close]

BLAST of IVF0004468 vs. ExPASy Swiss-Prot
Match: P46100 (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 6    LVKEKRKEKGSIKYFFLGRLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINL 65
            + K + K   +I Y+   RLDG T +  R+K  E FN+  N R +  +IST+AGSLGINL
Sbjct: 2070 IYKGEGKWLRNIDYY---RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINL 2129

Query: 66   HSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLA 125
             +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YRFLA GTME+KIY RQVTK+ L+
Sbjct: 2130 VAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLS 2189

Query: 126  ARVVDRQQVYRTISREEMLHLFEFGDD 153
             RVVD+QQV R  +  E+  L+ F  D
Sbjct: 2190 FRVVDQQQVERHFTMNELTELYTFEPD 2213

[Close]

BLAST of IVF0004468 vs. ExPASy Swiss-Prot
Match: Q7YQM4 (Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 6    LVKEKRKEKGSIKYFFLGRLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINL 65
            + K + K   +I Y+   RLDG T +  R+K  E FN+  N R +  +IST+AGSLGINL
Sbjct: 2070 IYKGEGKWLRNIDYY---RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINL 2129

Query: 66   HSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLA 125
             +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YRFLA GTME+KIY RQVTK+ L+
Sbjct: 2130 VAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLS 2189

Query: 126  ARVVDRQQVYRTISREEMLHLFEFGDD 153
             RVVD+QQV R  +  E+  L+ F  D
Sbjct: 2190 FRVVDQQQVERHFTMNELTELYTFEPD 2213

[Close]

BLAST of IVF0004468 vs. ExPASy Swiss-Prot
Match: Q7YQM3 (Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 6    LVKEKRKEKGSIKYFFLGRLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINL 65
            + K + K   +I Y+   RLDG T +  R+K  E FN+  N R +  +IST+AGSLGINL
Sbjct: 2070 IYKGEGKWLRNIDYY---RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINL 2129

Query: 66   HSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLA 125
             +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YRFLA GTME+KIY RQVTK+ L+
Sbjct: 2130 VAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLS 2189

Query: 126  ARVVDRQQVYRTISREEMLHLFEFGDD 153
             RVVD+QQV R  +  E+  L+ F  D
Sbjct: 2190 FRVVDQQQVERHFTMNELTELYTFEPD 2213

[Close]

BLAST of IVF0004468 vs. ExPASy TrEMBL
Match: A0A1S3B502 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1082 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1141

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1142 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1201

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1202 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1261

Query: 204  KHHPR 209
            KHHPR
Sbjct: 1262 KHHPR 1266

[Close]

BLAST of IVF0004468 vs. ExPASy TrEMBL
Match: A0A1S3B4Z9 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1180 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1239

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1240 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1299

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1300 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1359

Query: 204  KHHPR 209
            KHHPR
Sbjct: 1360 KHHPR 1364

[Close]

BLAST of IVF0004468 vs. ExPASy TrEMBL
Match: A0A5D3BHT1 (Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00030 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24  RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
           RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 513 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 572

Query: 84  LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
           LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 573 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 632

Query: 144 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
           LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 633 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 692

Query: 204 KHHPR 209
           KHHPR
Sbjct: 693 KHHPR 697

[Close]

BLAST of IVF0004468 vs. ExPASy TrEMBL
Match: A0A1S3B498 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1073 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1132

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1133 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1192

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1193 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1252

Query: 204  KHHPR 209
            KHHPR
Sbjct: 1253 KHHPR 1257

[Close]

BLAST of IVF0004468 vs. ExPASy TrEMBL
Match: A0A1S3B484 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1174 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1233

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1234 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1293

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1294 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1353

Query: 204  KHHPR 209
            KHHPR
Sbjct: 1354 KHHPR 1358

[Close]

BLAST of IVF0004468 vs. NCBI nr
Match: TYJ98677.1 (protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 372 bits (955), Expect = 4.56e-121
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24  RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
           RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 513 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 572

Query: 84  LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
           LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 573 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 632

Query: 144 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
           LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 633 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 692

Query: 204 KHHPR 208
           KHHPR
Sbjct: 693 KHHPR 697

[Close]

BLAST of IVF0004468 vs. NCBI nr
Match: XP_008441788.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X5 [Cucumis melo])

HSP 1 Score: 372 bits (955), Expect = 8.93e-117
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1073 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1132

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1133 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1192

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1193 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1252

Query: 204  KHHPR 208
            KHHPR
Sbjct: 1253 KHHPR 1257

[Close]

BLAST of IVF0004468 vs. NCBI nr
Match: XP_008441786.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo] >XP_008441787.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo])

HSP 1 Score: 372 bits (955), Expect = 9.88e-117
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1082 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1141

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1142 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1201

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1202 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1261

Query: 204  KHHPR 208
            KHHPR
Sbjct: 1262 KHHPR 1266

[Close]

BLAST of IVF0004468 vs. NCBI nr
Match: XP_008441785.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis melo])

HSP 1 Score: 372 bits (955), Expect = 2.43e-116
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1170 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1229

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1230 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1289

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1290 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1349

Query: 204  KHHPR 208
            KHHPR
Sbjct: 1350 KHHPR 1354

[Close]

BLAST of IVF0004468 vs. NCBI nr
Match: XP_008441784.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis melo])

HSP 1 Score: 372 bits (955), Expect = 2.52e-116
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD
Sbjct: 1174 RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1233

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM
Sbjct: 1234 LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 1293

Query: 144  LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 203
            LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG
Sbjct: 1294 LHLFEFGDDESLEASTELDQGNGHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMETLLG 1353

Query: 204  KHHPR 208
            KHHPR
Sbjct: 1354 KHHPR 1358

[Close]

BLAST of IVF0004468 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-66
Identity = 134/187 (71.66%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            R+DG+TESSERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRVIIVDGSWNPTYD
Sbjct: 1151 RIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1210

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAI+RAWRYGQ KPVFAYR +A GT+EEKIYKRQVTKEGLAARVVDRQQV+RTIS+EEM
Sbjct: 1211 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM 1270

Query: 144  LHLFEF-GDDESLEASTELDQGN--GHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMET 203
            LHLFEF  DDE  EA TE+ + N  GH++       Q  +  +K  LS      DKLME 
Sbjct: 1271 LHLFEFDDDDEKSEAVTEISKQNEAGHSN----LVEQAILWTKKATLS--RVGGDKLMEN 1330

Query: 204  LLGKHHP 208
            LL +H P
Sbjct: 1331 LLQRHGP 1331

[Close]

BLAST of IVF0004468 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-66
Identity = 134/187 (71.66%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            R+DG+TESSERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRVIIVDGSWNPTYD
Sbjct: 1172 RIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAI+RAWRYGQ KPVFAYR +A GT+EEKIYKRQVTKEGLAARVVDRQQV+RTIS+EEM
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM 1291

Query: 144  LHLFEF-GDDESLEASTELDQGN--GHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMET 203
            LHLFEF  DDE  EA TE+ + N  GH++       Q  +  +K  LS      DKLME 
Sbjct: 1292 LHLFEFDDDDEKSEAVTEISKQNEAGHSN----LVEQAILWTKKATLS--RVGGDKLMEN 1351

Query: 204  LLGKHHP 208
            LL +H P
Sbjct: 1352 LLQRHGP 1352

[Close]

BLAST of IVF0004468 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-66
Identity = 134/187 (71.66%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            R+DG+TESSERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRVIIVDGSWNPTYD
Sbjct: 1172 RIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAI+RAWRYGQ KPVFAYR +A GT+EEKIYKRQVTKEGLAARVVDRQQV+RTIS+EEM
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM 1291

Query: 144  LHLFEF-GDDESLEASTELDQGN--GHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMET 203
            LHLFEF  DDE  EA TE+ + N  GH++       Q  +  +K  LS      DKLME 
Sbjct: 1292 LHLFEFDDDDEKSEAVTEISKQNEAGHSN----LVEQAILWTKKATLS--RVGGDKLMEN 1351

Query: 204  LLGKHHP 208
            LL +H P
Sbjct: 1352 LLQRHGP 1352

[Close]

BLAST of IVF0004468 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-66
Identity = 134/187 (71.66%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 24   RLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 83
            R+DG+TESSERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRVIIVDGSWNPTYD
Sbjct: 1172 RIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231

Query: 84   LQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEM 143
            LQAI+RAWRYGQ KPVFAYR +A GT+EEKIYKRQVTKEGLAARVVDRQQV+RTIS+EEM
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM 1291

Query: 144  LHLFEF-GDDESLEASTELDQGN--GHTSHQIMTGHQGNVLKQKGPLSHGNCSSDKLMET 203
            LHLFEF  DDE  EA TE+ + N  GH++       Q  +  +K  LS      DKLME 
Sbjct: 1292 LHLFEFDDDDEKSEAVTEISKQNEAGHSN----LVEQAILWTKKATLS--RVGGDKLMEN 1351

Query: 204  LLGKHHP 208
            LL +H P
Sbjct: 1352 LLQRHGP 1352

[Close]

BLAST of IVF0004468 vs. TAIR 10
Match: AT3G19210.1 (homolog of RAD54 )

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-26
Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 18  KYFFLGRLDGRTESSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 77
           +Y FL RLDG T  S+RQK+V R N+P  K     L+S++AG  G+NL  ANR+++ D  
Sbjct: 575 RYPFL-RLDGSTTISKRQKLVNRLNDP-TKDEFAFLLSSKAGGCGLNLIGANRLVLFDPD 634

Query: 78  WNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRT 137
           WNP  D QA  R WR GQ K V+ YRFL+ GT+EEK+Y+RQ++KEGL  +V+  +Q   +
Sbjct: 635 WNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGL-QKVIQHEQTDNS 694

Query: 138 ------ISREEMLHLFEFGDDESLEASTELD----QGNGHTSHQIMTGHQGNV 181
                 +S E++  LF F  D   E   ++     Q +   +  I  G++ NV
Sbjct: 695 TRQGNLLSTEDLRDLFSFHGDVRSEIHEKMSCSRCQNDASGTENIEEGNENNV 744

The following BLAST results are available for this feature:

BLAST of IVF0004468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW51	4.1e-65	71.66	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=...	[more]
Q61687	4.7e-37	58.91	Transcriptional regulator ATRX OS=Mus musculus OX=10090 GN=Atrx PE=1 SV=3	[more]
P46100	1.0e-36	54.42	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5	[more]
Q7YQM4	1.0e-36	54.42	Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1	[more]
Q7YQM3	1.0e-36	54.42	Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1	[more]

BLAST of IVF0004468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B502	1.1e-100	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B4Z9	1.1e-100	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A5D3BHT1	1.1e-100	100.00	Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B498	1.1e-100	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B484	1.1e-100	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]

BLAST of IVF0004468 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98677.1	4.56e-121	100.00	protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008441788.1	8.93e-117	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X5 [Cucumis melo]	[more]
XP_008441786.1	9.88e-117	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo] >XP_0084417...	[more]
XP_008441785.1	2.43e-116	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis melo]	[more]
XP_008441784.1	2.52e-116	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis melo]	[more]

BLAST of IVF0004468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08600.1	2.9e-66	71.66	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.3	2.9e-66	71.66	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.4	2.9e-66	71.66	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.2	2.9e-66	71.66	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G19210.1	2.9e-26	41.04	homolog of RAD54	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 9..94 e-value: 5.2E-15 score: 65.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 20..94 e-value: 3.1E-14 score: 53.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 1..142 score: 14.049283
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..186 e-value: 4.9E-51 score: 175.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 23..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..208
None	No IPR available	PANTHER	PTHR45797:SF1	RAD54-LIKE	coord: 23..208
None	No IPR available	CDD	cd18793	SF2_C_SNF	coord: 13..105 e-value: 2.26988E-39 score: 129.904
IPR044574	ATPase ARIP4-like	PANTHER	PTHR45797	RAD54-LIKE	coord: 23..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004468.2	IVF0004468.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0046872	metal ion binding