IVF0004346 (gene) Melon (IVF77) v1

Overview
NameIVF0004346
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 15309122 .. 15309524 (+)
RNA-Seq ExpressionIVF0004346
SyntenyIVF0004346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTCTTTCGGCTTAAGTGTGACTCTTGGGTCTGGATAAGCGGGACCTCTTGGTTCGGGGGAAACCTGAGATCTTGGCTAAGAAAGCTAAGGAGGCAAGTACAGGATGGAGAAAATGCACAAGGACCGATAGGGAGAGAAGAGAACGAGTTTGATCGGGAGATTAGGGTCGGAACTCTGAATGGGGAAGGTATAGTAACTAACTCAAATCGGAAGCTGCCGCCTGGTTCGAGCACGTTGACTGCCTGGAAGCGTTTTCTTTTCGGTTGAGAAAAGCTAGACAAATTCTCAGTTGCGGATGGAAAGGGTAGGCCCAGGAAAGGGACCCAGTCAAATTCTCTCTTTCCGTAGCAAGACAGCTAACCAGTGTGGCCTGCATGAACATGGTTAAGCACGCGAG

mRNA sequence

ATGTCAGTCTTTCGGCTTAAGTGTGACTCTTGGGTCTGGATAAGCGGGACCTCTTGGTTCGGGGGAAACCTGAGATCTTGGCTAAGAAAGCTAAGGAGGCAAGTACAGGATGGAGAAAATGCACAAGGACCGATAGGGAGAGAAGAGAACGAGTTTGATCGGGAGATTAGGGTCGGAACTCTGAATGGGGAAGGTATAGTAACTAACTCAAATCGGAAGCTGCCGCCTGGTTCGAGCACGTTGACTGCCTGGAAGCGTTTTCTTTTCGGTTGAGAAAAGCTAGACAAATTCTCAGTTGCGGATGGAAAGGGTAGGCCCAGGAAAGGGACCCAGTCAAATTCTCTCTTTCCGTAGCAAGACAGCTAACCAGTGTGGCCTGCATGAACATGGTTAAGCACGCGAG

Coding sequence (CDS)

ATGTCAGTCTTTCGGCTTAAGTGTGACTCTTGGGTCTGGATAAGCGGGACCTCTTGGTTCGGGGGAAACCTGAGATCTTGGCTAAGAAAGCTAAGGAGGCAAGTACAGGATGGAGAAAATGCACAAGGACCGATAGGGAGAGAAGAGAACGAGTTTGATCGGGAGATTAGGGTCGGAACTCTGAATGGGGAAGGTATAGTAACTAACTCAAATCGGAAGCTGCCGCCTGGTTCGAGCACGTTGACTGCCTGGAAGCGTTTTCTTTTCGGTTGA

Protein sequence

MSVFRLKCDSWVWISGTSWFGGNLRSWLRKLRRQVQDGENAQGPIGREENEFDREIRVGTLNGEGIVTNSNRKLPPGSSTLTAWKRFLFG
Homology
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BLAST of IVF0004346 vs. ExPASy TrEMBL
Match: A0A0A0KZB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G526580 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 7  KCDSWVWISGTSWFGGNLRSWLRKLRRQVQDGENA 42
          +CDSWVWIS TSWFGGN RSWLRKL RQVQDGENA
Sbjct: 12 ECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENA 46

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BLAST of IVF0004346 vs. NCBI nr
Match: TYJ99676.1 (hypothetical protein E5676_scaffold562G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 4.56e-05
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 17  TSWFGGNLRSWLRKLRRQVQDGENAQ 42
           TSWF G+LRSWLRKL RQVQD ENAQ
Sbjct: 82  TSWFEGSLRSWLRKLSRQVQDKENAQ 107

The following BLAST results are available for this feature:
BLAST of IVF0004346 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004346 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZB56.4e-1088.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G526580 PE=4 SV=1[more]
BLAST of IVF0004346 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ99676.14.56e-0584.62hypothetical protein E5676_scaffold562G00680 [Cucumis melo var. makuwa][more]
BLAST of IVF0004346 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004346.1IVF0004346.1mRNA