IVF0004341 (gene) Melon (IVF77) v1

Overview


Name	IVF0004341
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Glutamate receptor
Location	chr02: 18525024 .. 18525185 (-)
RNA-Seq Expression	IVF0004341
Synteny	IVF0004341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTAATGCACAAACAACTCAATCTGGATCGGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

mRNA sequence

ATGGAACCTAATGCACAAACAACTCAATCTGGATCGGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

Coding sequence (CDS)

ATGGAACCTAATGCACAAACAACTCAATCTGGATCGGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

Protein sequence

MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP

Homology

[Close]

BLAST of IVF0004341 vs. ExPASy TrEMBL
Match: A0A5A7V1I8 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00010 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 911 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 963

[Close]

BLAST of IVF0004341 vs. ExPASy TrEMBL
Match: A0A5D3CE25 (Glutamate receptor 2.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00640 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 940 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 992

[Close]

BLAST of IVF0004341 vs. ExPASy TrEMBL
Match: A0A0A0LWR2 (PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G295160 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRI 42
           ME NAQTTQSGS  SVSEIAEATTP+H DS EEPH LGIRI
Sbjct: 186 MEHNAQTTQSGSEHSVSEIAEATTPNHGDSTEEPHNLGIRI 226

[Close]

BLAST of IVF0004341 vs. NCBI nr
Match: TYK09468.1 (glutamate receptor 2.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 2.01e-24
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 53
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 940 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 992

[Close]

BLAST of IVF0004341 vs. NCBI nr
Match: KAA0059725.1 (glutamate receptor 2.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 2.01e-24
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 53
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 911 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 963

[Close]

BLAST of IVF0004341 vs. NCBI nr
Match: XP_008453654.1 (PREDICTED: glutamate receptor 2.7-like [Cucumis melo])

HSP 1 Score: 46.2 bits (108), Expect = 8.15e-04
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 13  VRSVSEIAEATTPDHDDSIEEPHKLGIR 40
           V SVSEIAEATTPDHD+  E+PH LG++
Sbjct: 619 VHSVSEIAEATTPDHDNPTEDPHNLGVK 646

The following BLAST results are available for this feature:

BLAST of IVF0004341 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1I8	2.3e-20	100.00	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G0...	[more]
A0A5D3CE25	2.3e-20	100.00	Glutamate receptor 2.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LWR2	3.5e-08	82.93	PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G295160 PE=4 S...	[more]

BLAST of IVF0004341 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09468.1	2.01e-24	100.00	glutamate receptor 2.7-like [Cucumis melo var. makuwa]	[more]
KAA0059725.1	2.01e-24	100.00	glutamate receptor 2.7-like [Cucumis melo var. makuwa]	[more]
XP_008453654.1	8.15e-04	71.43	PREDICTED: glutamate receptor 2.7-like [Cucumis melo]	[more]

BLAST of IVF0004341 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004341.1	IVF0004341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity