IVF0004320 (gene) Melon (IVF77) v1

Overview
NameIVF0004320
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Locationchr02: 12957343 .. 12957994 (+)
RNA-Seq ExpressionIVF0004320
SyntenyIVF0004320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGTAATGGGTGACATTGAACTACCAGTTAAAATTGGCCCATGTATTTTCAACATAGTCTTTCAAGTCATGGAGATAACACCCACATACAGTTTTTTATTAGGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA

mRNA sequence

ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA

Coding sequence (CDS)

ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA

Protein sequence

MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRREDVLGFTPQEWCHPHCIKN
Homology
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 831

BLAST of IVF0004320 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.3e-82
Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYK L TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 313 MPIIAKDIEYKNLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 372

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 373 LDILNKAHVGHDISVKKFSGIIGNITSSNSIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 432

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 433 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 477

BLAST of IVF0004320 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 159/165 (96.36%), Postives = 159/165 (96.36%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 459 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 518

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNIT  NSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 519 LDILNKAHVGHDISVEKFSGIIGNITPPNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 578

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK FDG RRE
Sbjct: 579 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKVFDGSRRE 623

BLAST of IVF0004320 vs. ExPASy TrEMBL
Match: A0A5A7T0R1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00300 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 158/165 (95.76%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
           ARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE 837

BLAST of IVF0004320 vs. ExPASy TrEMBL
Match: A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.3e-81
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 640 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 699

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 700 LDILNKAHVGHDISMEKFSGIIGNITSSNFIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 759

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK F+G RRE
Sbjct: 760 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKDFNGSRRE 804

BLAST of IVF0004320 vs. NCBI nr
Match: KAA0065724.1 (uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13749.1 uncharacterized protein E5676_scaffold488G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 303 bits (776), Expect = 5.74e-101
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VL
Sbjct: 101 MPIIAKDIEYKKLVTDEEANEFLKIVKQSENKIIEQMHHTQARISLLSLFLNSEPHREVL 160

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 161 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVLTDDEIPPEGLGHTKALHIQVKCKDYVI 220

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLR 163
           ARVLVDN STLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG R
Sbjct: 221 ARVLVDNRSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR 263

BLAST of IVF0004320 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (816), Expect = 4.03e-98
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 831

BLAST of IVF0004320 vs. NCBI nr
Match: TYK27304.1 (uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 9.33e-98
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607

BLAST of IVF0004320 vs. NCBI nr
Match: KAA0037781.1 (uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 9.33e-98
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
           ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607

BLAST of IVF0004320 vs. NCBI nr
Match: KAA0036950.1 (uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (798), Expect = 2.20e-96
Identity = 158/165 (95.76%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
           MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732

Query: 61  LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
           LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792

Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
           ARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE 837

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DEB31.0e-8398.18Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TRL73.3e-8296.36Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010... [more]
A0A5A7T7R44.4e-8296.36Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282... [more]
A0A5A7T0R11.3e-8195.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VIM66.3e-8195.15RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
Match NameE-valueIdentityDescription
KAA0065724.15.74e-10195.71uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13... [more]
TYK21788.14.03e-9898.18uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa][more]
TYK27304.19.33e-9894.55uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa][more]
KAA0037781.19.33e-9894.55uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa][more]
KAA0036950.12.20e-9695.76uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33240:SF7GAG-PRO-LIKE PROTEINcoord: 11..165
NoneNo IPR availablePANTHERPTHR33240OS08G0508500 PROTEINcoord: 11..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004320.1IVF0004320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity