Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGTAATGGGTGACATTGAACTACCAGTTAAAATTGGCCCATGTATTTTCAACATAGTCTTTCAAGTCATGGAGATAACACCCACATACAGTTTTTTATTAGGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
mRNA sequence
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
Coding sequence (CDS)
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
Protein sequence
MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRREDVLGFTPQEWCHPHCIKN
Homology
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match:
A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 831
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match:
A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 3.3e-82
Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYK L TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 313 MPIIAKDIEYKNLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 372
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 373 LDILNKAHVGHDISVKKFSGIIGNITSSNSIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 432
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 433 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 477
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match:
A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)
HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 159/165 (96.36%), Postives = 159/165 (96.36%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 459 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 518
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNIT NSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 519 LDILNKAHVGHDISVEKFSGIIGNITPPNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 578
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK FDG RRE
Sbjct: 579 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKVFDGSRRE 623
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match:
A0A5A7T0R1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00300 PE=4 SV=1)
HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 158/165 (95.76%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
ARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE 837
BLAST of IVF0004320 vs. ExPASy TrEMBL
Match:
A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)
HSP 1 Score: 310.1 bits (793), Expect = 6.3e-81
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 640 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 699
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 700 LDILNKAHVGHDISMEKFSGIIGNITSSNFIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 759
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 166
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK F+G RRE
Sbjct: 760 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKDFNGSRRE 804
BLAST of IVF0004320 vs. NCBI nr
Match:
KAA0065724.1 (uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13749.1 uncharacterized protein E5676_scaffold488G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 303 bits (776), Expect = 5.74e-101
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VL
Sbjct: 101 MPIIAKDIEYKKLVTDEEANEFLKIVKQSENKIIEQMHHTQARISLLSLFLNSEPHREVL 160
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 161 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVLTDDEIPPEGLGHTKALHIQVKCKDYVI 220
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLR 163
ARVLVDN STLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG R
Sbjct: 221 ARVLVDNRSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR 263
BLAST of IVF0004320 vs. NCBI nr
Match:
TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 318 bits (816), Expect = 4.03e-98
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 831
BLAST of IVF0004320 vs. NCBI nr
Match:
TYK27304.1 (uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa])
HSP 1 Score: 305 bits (782), Expect = 9.33e-98
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607
BLAST of IVF0004320 vs. NCBI nr
Match:
KAA0037781.1 (uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa])
HSP 1 Score: 305 bits (782), Expect = 9.33e-98
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
ARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607
BLAST of IVF0004320 vs. NCBI nr
Match:
KAA0036950.1 (uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa])
HSP 1 Score: 311 bits (798), Expect = 2.20e-96
Identity = 158/165 (95.76%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792
Query: 121 ARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE 165
ARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE 837
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DEB3 | 1.0e-83 | 98.18 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7TRL7 | 3.3e-82 | 96.36 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010... | [more] |
A0A5A7T7R4 | 4.4e-82 | 96.36 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282... | [more] |
A0A5A7T0R1 | 1.3e-81 | 95.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VIM6 | 6.3e-81 | 95.15 | RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... | [more] |
Match Name | E-value | Identity | Description | |
KAA0065724.1 | 5.74e-101 | 95.71 | uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13... | [more] |
TYK21788.1 | 4.03e-98 | 98.18 | uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa] | [more] |
TYK27304.1 | 9.33e-98 | 94.55 | uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa] | [more] |
KAA0037781.1 | 9.33e-98 | 94.55 | uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa] | [more] |
KAA0036950.1 | 2.20e-96 | 95.76 | uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |