IVF0004293 (gene) Melon (IVF77) v1

Overview


Name	IVF0004293
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	chr04: 27870743 .. 27872002 (-)
RNA-Seq Expression	IVF0004293
Synteny	IVF0004293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTATGAAATTTTCTTTGAATCCCCATTTTTTCTTTCAAAGCCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAGAGATGGAGAAAGCCAGTAGTGAGCGCTCAAACTCGGTTAGAAGGCAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCCAAAAATTCAGGGTCATCCTCAAACTCCACGAGCTCATGACCAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATGTGTTCGACGTATTTCCTCATCCAGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAATGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTCATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATGAGGATGGAGCTGTGGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGTGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGAGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCGTATGAGAAGAGACAACGGTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTTCTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTTGATCGACTTGTCCATTTTAGGCGTGATTTTGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAGTATTCTACATATCAACCAAGGGGACCACCCAAATCGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGCCGCCGACACACAAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAGCCGATAATGGAGACTGGCTATCTAAGAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTTGATTGA

mRNA sequence

ATGAGGTATGAAATTTTCTTTGAATCCCCATTTTTTCTTTCAAAGCCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAGAGATGGAGAAAGCCAGTAGTGAGCGCTCAAACTCGGTTAGAAGGCAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCCAAAAATTCAGGGTCATCCTCAAACTCCACGAGCTCATGACCAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATGTGTTCGACGTATTTCCTCATCCAGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAATGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTCATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATGAGGATGGAGCTGTGGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGTGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGAGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCGTATGAGAAGAGACAACGGTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTTCTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTTGATCGACTTGTCCATTTTAGGCGTGATTTTGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAGTATTCTACATATCAACCAAGGGGACCACCCAAATCGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGCCGCCGACACACAAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAGCCGATAATGGAGACTGGCTATCTAAGAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTTGATTGA

Coding sequence (CDS)

ATGAGGTATGAAATTTTCTTTGAATCCCCATTTTTTCTTTCAAAGCCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAGAGATGGAGAAAGCCAGTAGTGAGCGCTCAAACTCGGTTAGAAGGCAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCCAAAAATTCAGGGTCATCCTCAAACTCCACGAGCTCATGACCAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATGTGTTCGACGTATTTCCTCATCCAGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAATGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTCATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATGAGGATGGAGCTGTGGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGTGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGAGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCGTATGAGAAGAGACAACGGTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTTCTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTTGATCGACTTGTCCATTTTAGGCGTGATTTTGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAGTATTCTACATATCAACCAAGGGGACCACCCAAATCGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGCCGCCGACACACAAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAGCCGATAATGGAGACTGGCTATCTAAGAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTTGATTGA

Protein sequence

MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD

Homology

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BLAST of IVF0004293 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.0e-62
Identity = 138/359 (38.44%), Postives = 206/359 (57.38%), Query Frame = 0


Query: 36  KPVVSAQT--RLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFV--SLQIMSRW 95
           KP   + T  + + R RD   D      +K R ++K H L+ ++         L  ++R 
Sbjct: 32  KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query: 96  RNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 155
             +   +   G FL K+PHVF+++ HPV+R L CR+T K    ++ E   + D   + V 
Sbjct: 92  LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT 151

Query: 156 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE-----IVELV 215
           RL+KL+MMS  G + +  +R+   E GLP+ F  S++ K+   FRL+D E      +E+V
Sbjct: 152 RLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIV 211

Query: 216 EKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYT 275
           EK  + ++  +E+ RE E+R K +   DV+++F +NFP GF I   FR  +  WQRLPY 
Sbjct: 212 EKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYW 271

Query: 276 QPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVNIRE 335
            PYE    +  RS     R EKR+VA +HELLSLTVEK + ++R+ HFR    +   ++E
Sbjct: 272 SPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKE 331

Query: 336 LLLKHPGVFYISTKGT---TQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 383
            LL+H G+FYIST+G       VFLRE Y +G LVEPN +Y+ RR++ +LVL+  R  K
Sbjct: 332 FLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

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BLAST of IVF0004293 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-37
Identity = 115/373 (30.83%), Postives = 198/373 (53.08%), Query Frame = 0


Query: 35  RKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNI 94
           R+  V AQ  ++ R +++  D +  + +K +++LKL  ++ +      +SL+ + R+R  
Sbjct: 51  RRLAVVAQAAVK-RRKEIPFDNVIQRDKKLKLVLKLRNILVSNP-DRVMSLRDLGRFRRD 110

Query: 95  VGV--RIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQR 154
           +G+  +  +   L ++P VF+V    V  +L  R+T     L   E ++ N+ E   V +
Sbjct: 111 LGLTRKRRLIALLKRFPGVFEVVEEGV-YSLRFRLTPAAERLYLDELHLKNESEGLAVTK 170

Query: 155 LKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEI---VELVEKH 214
           L+KLLMMS +  + +  +  +  +LGLP  FR++I  +Y   FR+V ++    +EL    
Sbjct: 171 LRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHWD 230

Query: 215 EDGAVAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQRLP 274
            + AV+  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ +P
Sbjct: 231 PELAVSAAEV-AEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMP 290

Query: 275 YTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVNI 334
           Y  PY     F H  SG  ++ EK A  V+HE+LSLT+EK   VD L HFR +F    ++
Sbjct: 291 YISPYSD---FSHLRSGSAEK-EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSL 350

Query: 335 RELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQL 394
           R +L++HP +FY+S KG    VFLREAY    LVE + + +++ KM+ LV + R   + +
Sbjct: 351 RGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRGV 410

Query: 395 ESSMEIKENDNAA 398
            ++ E  +  N A
Sbjct: 411 PATSEEADRTNGA 415

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BLAST of IVF0004293 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-36
Identity = 114/356 (32.02%), Postives = 187/356 (52.53%), Query Frame = 0


Query: 33  RWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFVSLQIMSRWR 92
           R R   V AQ  ++ R ++   D +  + +K +++LKL  ++   +    +SL+ + R+R
Sbjct: 43  RPRPAAVVAQAAVK-RRKEAPFDTVIQRDKKLKLVLKLRNILV-AQPDRVMSLRELGRFR 102

Query: 93  NIVGV--RIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETV 152
             +G+  +  +   L ++P VFDV    V  +L  R+T     L   E  + N+ E   V
Sbjct: 103 RDLGLTRKRRLIALLRRFPGVFDVVEEGV-YSLRFRLTPAAERLYLDELRLRNESEGLAV 162

Query: 153 QRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE---IVELVE 212
            +L+KLLMMS    + +  +  +  +LGLP  FR+++  +Y   FR+V ++    +EL  
Sbjct: 163 AKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTH 222

Query: 213 KHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQR 272
              + AV+  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ 
Sbjct: 223 WDPELAVSAAE-LAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKE 282

Query: 273 LPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEV 332
           +PY  PY     F H  SG  ++ EK A  V+HE+LSLTVEK   VD L HFR +F    
Sbjct: 283 MPYISPYAD---FSHLRSGSDEK-EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQ 342

Query: 333 NIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 379
           ++R ++++HP +FY+S KG    VFLREAY    LVE N + +++ KM+ LV + R
Sbjct: 343 SLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPR 390

[Close]

BLAST of IVF0004293 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.2e-35
Identity = 104/340 (30.59%), Postives = 179/340 (52.65%), Query Frame = 0


Query: 48  RTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGV--RIGIGEFL 107
           R ++L  D +  + +K +++L + +++ ++     +SL+ + ++R  +G+  R      L
Sbjct: 78  RRKELTFDSVVQRDKKLKLVLNIRKILVSQP-DRMMSLRGLGKYRRDLGLKKRRRFIALL 137

Query: 108 HKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTL 167
            KYP VF++       +L  ++T +   L   E  + N++E   V +L+KL+MMS++  +
Sbjct: 138 RKYPGVFEIVEEGA-YSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRI 197

Query: 168 HVHALRLISRELGLPDGFRESILEKYSDDFRLVDL---EIVELVEKHEDGAVAEVE---- 227
            +  +  +  +LGLP  FR++I ++Y   FR+V       +EL     + AV+  E    
Sbjct: 198 LLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSED 257

Query: 228 KWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHR 287
             R RE  E+ L          +  P G  +      K+  ++ + Y  PY+    F H 
Sbjct: 258 DNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKD---FSHL 317

Query: 288 SSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYIS 347
            SG +++ EK A  V+HELLSLT EK   VD L HFR +F     +R +L++HP +FY+S
Sbjct: 318 RSGTLEK-EKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVS 377

Query: 348 TKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 379
            KG    VFLREAY    L++ +P+ +V+ KM+ LV + R
Sbjct: 378 LKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPR 411

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BLAST of IVF0004293 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.5e-22
Identity = 87/308 (28.25%), Postives = 140/308 (45.45%), Query Frame = 0


Query: 83  VSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVI 142
           + +  +S+      V   I  FL K+P +F+ F  P       R+T + T L +QE  V 
Sbjct: 67  IPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVY 126

Query: 143 NDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE- 202
                +   RLKKL++MS +  L +  ++ +   LGLPD + +         FR VD+E 
Sbjct: 127 QTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMED 186

Query: 203 -IVELVEKHEDG-AVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRN 262
            +  L   +  G  V  V +    + R   +S  +++  FP+    G  +     + L  
Sbjct: 187 GVKGLAVDYNGGDKVLSVLQKNAMKKRRGEVSLEEIE--FPLFPSKGCRLRVKIEDWLME 246

Query: 263 WQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFA 322
           +Q+LPY  PY+        S       EKR V  LHELL L VE   +  +L+  ++ F 
Sbjct: 247 FQKLPYVSPYDDYSCLDPSSDIA----EKRVVGFLHELLCLFVEHSAERKKLLCLKKHFG 306

Query: 323 IEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKM------QDL 382
           +   + +   +HP +FY+S K  T    LRE Y     VE +P+  VR+K        +L
Sbjct: 307 LPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSEL 366

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BLAST of IVF0004293 vs. ExPASy TrEMBL
Match: A0A1S3B7J9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4 SV=1)

HSP 1 Score: 845.9 bits (2184), Expect = 7.3e-242
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60
           MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120
           LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of IVF0004293 vs. ExPASy TrEMBL
Match: A0A0A0LFE1 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 SV=1)

HSP 1 Score: 815.1 bits (2104), Expect = 1.4e-232
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of IVF0004293 vs. ExPASy TrEMBL
Match: A0A5A7UFE6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006380 PE=4 SV=1)

HSP 1 Score: 809.3 bits (2089), Expect = 7.6e-231
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 78
           SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 318
           NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 420
           RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of IVF0004293 vs. ExPASy TrEMBL
Match: A0A6J1FCB5 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444101 PE=4 SV=1)

HSP 1 Score: 733.4 bits (1892), Expect = 5.3e-208
Identity = 361/413 (87.41%), Postives = 386/413 (93.46%), Query Frame = 0


Query: 7   FESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRV 66
           FES F LS   FSR+ FGPFNHFCQ+RW KP V+AQTRLE RTRDLKLDKLATQ++K R+
Sbjct: 4   FESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLRI 63

Query: 67  ILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCR 126
           I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPHVFDVFPHP+RRNLCCR
Sbjct: 64  IFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCCR 123

Query: 127 ITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRES 186
           ITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRES
Sbjct: 124 ITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRES 183

Query: 187 ILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTG 246
           IL KYSDDFRLVDLEIVELV+KHE+ AVAEVE+WREREFREKWLSEFDVK+AFPINFPTG
Sbjct: 184 ILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPTG 243

Query: 247 FIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLV 306
           F I+GGFREKLRNWQRLPY +PYEKRQ FG RS GG+ R EKRAVAVLHELLSLTVEKLV
Sbjct: 244 FKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKLV 303

Query: 307 DVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIV 366
           DV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKG TQIVFLREAYAKGCLVEPNPIYIV
Sbjct: 304 DVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYIV 363

Query: 367 RRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 420
           RRKMQDL+LLGRRHTKQLESSMEIKE+ +AADNGDWLSKSEGSWVLPILQGFD
Sbjct: 364 RRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

[Close]

BLAST of IVF0004293 vs. ExPASy TrEMBL
Match: A0A6J1I6W3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470166 PE=4 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 3.2e-205
Identity = 357/413 (86.44%), Postives = 383/413 (92.74%), Query Frame = 0


Query: 7   FESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRV 66
           FES F LS   FSR+ FGPFNHFCQ+RW KP V+AQTRLE R RDLKLD LATQ++K R+
Sbjct: 4   FESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRIRDLKLDTLATQIRKLRI 63

Query: 67  ILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCR 126
           I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPHVFDVFPHP+RRNLCCR
Sbjct: 64  IFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCCR 123

Query: 127 ITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRES 186
           ITGKM ALMKQEENVIND EIETVQRLKKLLMMS NGTLH+HALRLIS+ELGLPDGFRES
Sbjct: 124 ITGKMAALMKQEENVINDSEIETVQRLKKLLMMSANGTLHIHALRLISKELGLPDGFRES 183

Query: 187 ILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTG 246
           IL KYSDDFRLVDLEIVELV+KHE+ AVAEVE+WREREFREKWLSEFDVK+AFPINFPTG
Sbjct: 184 ILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPTG 243

Query: 247 FIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLV 306
           + I+GGFREKLRNWQRLPY +PYEKRQ FG RS GG+ RHEKRAVAVLHELLSLTVEKLV
Sbjct: 244 YKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRHEKRAVAVLHELLSLTVEKLV 303

Query: 307 DVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIV 366
           DV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKG TQIVFLREAYAKGCLVEPNPIYIV
Sbjct: 304 DVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYIV 363

Query: 367 RRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 420
           RRKMQDL+LLGRRHTKQLESSMEIKE+ +AADNGD LSKSEGSWVLPILQGFD
Sbjct: 364 RRKMQDLLLLGRRHTKQLESSMEIKEHVSAADNGDCLSKSEGSWVLPILQGFD 416

[Close]

BLAST of IVF0004293 vs. NCBI nr
Match: XP_008443210.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443212.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443213.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 851 bits (2198), Expect = 1.36e-311
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60
           MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120
           LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of IVF0004293 vs. NCBI nr
Match: XP_004136766.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN59407.1 hypothetical protein Csa_001413 [Cucumis sativus])

HSP 1 Score: 820 bits (2118), Expect = 2.13e-299
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of IVF0004293 vs. NCBI nr
Match: KAA0053914.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 814 bits (2102), Expect = 8.88e-297
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 78
           SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 318
           NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419
           RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of IVF0004293 vs. NCBI nr
Match: XP_038903898.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903900.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 777 bits (2006), Expect = 2.50e-282
Identity = 380/419 (90.69%), Postives = 399/419 (95.23%), Query Frame = 0


Query: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60
           MRY+I  ES   LSKP  SRIPFGPFNHFCQ+RWRKPV +AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYKISLESALSLSKPKISRIPFGPFNHFCQRRWRKPVENAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120
            QKFR+ILKL ELM +RKRGPFVSLQIMSRWRNIVG++IGIGEF+HKYPHVFDVFPHPVR
Sbjct: 61  FQKFRIILKLRELMIDRKRGPFVSLQIMSRWRNIVGLKIGIGEFVHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVIND+EIETVQRLKKLLMMSVNG LHVHALRLIS+ELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDLEIETVQRLKKLLMMSVNGALHVHALRLISKELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240
           DGF ESILEKYSDDFRLVDLEIVELVEKHE+GAVAEVE+WREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFGESILEKYSDDFRLVDLEIVELVEKHENGAVAEVEQWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGF IEGGFREKLRNWQRLPY +PYEKRQ FG RSSGG+QRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFRIEGGFREKLRNWQRLPYAKPYEKRQGFGFRSSGGMQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVD++RLVHFRRDFAIEVNIRELLLKHPG+FYISTKG TQIVFLREAYAKGCL+EP
Sbjct: 301 TVEKLVDIERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLIEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKEND+AA NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDSAAYNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of IVF0004293 vs. NCBI nr
Match: XP_022937832.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_022937840.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 738 bits (1906), Expect = 3.85e-267
Identity = 361/413 (87.41%), Postives = 386/413 (93.46%), Query Frame = 0


Query: 7   FESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRV 66
           FES F LS   FSR+ FGPFNHFCQ+RW KP V+AQTRLE RTRDLKLDKLATQ++K R+
Sbjct: 4   FESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLRI 63

Query: 67  ILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCR 126
           I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPHVFDVFPHP+RRNLCCR
Sbjct: 64  IFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCCR 123

Query: 127 ITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRES 186
           ITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRES
Sbjct: 124 ITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRES 183

Query: 187 ILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTG 246
           IL KYSDDFRLVDLEIVELV+KHE+ AVAEVE+WREREFREKWLSEFDVK+AFPINFPTG
Sbjct: 184 ILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPTG 243

Query: 247 FIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLV 306
           F I+GGFREKLRNWQRLPY +PYEKRQ FG RS GG+ R EKRAVAVLHELLSLTVEKLV
Sbjct: 244 FKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKLV 303

Query: 307 DVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIV 366
           DV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKG TQIVFLREAYAKGCLVEPNPIYIV
Sbjct: 304 DVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYIV 363

Query: 367 RRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419
           RRKMQDL+LLGRRHTKQLESSMEIKE+ +AADNGDWLSKSEGSWVLPILQGFD
Sbjct: 364 RRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

[Close]

BLAST of IVF0004293 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 482.6 bits (1241), Expect = 3.1e-136
Identity = 231/398 (58.04%), Postives = 312/398 (78.39%), Query Frame = 0


Query: 25  PFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFVS 84
           P   + Q+RW KPV SAQTRLE RTRD +LDK+  Q++K  +IL++ +LM+++KRGPFVS
Sbjct: 45  PLYFYNQRRWLKPVDSAQTRLENRTRDHQLDKIIPQIRKLNIILEISKLMSSKKRGPFVS 104

Query: 85  LQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVIND 144
           LQ+MSRW+N+VG+ + +G F+ KYPH F++F HP  +NLCC+IT K   L+ +EENV+ +
Sbjct: 105 LQLMSRWKNLVGLNVNVGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRE 164

Query: 145 MEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVE 204
            E++ V+R+KKLL++S +G L VHALRLI +ELGLP+ FR+SIL KYS +FRLVDLE +E
Sbjct: 165 CEVDAVKRVKKLLLLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLETLE 224

Query: 205 LVEKHEDG-AVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRL 264
           LV++ ++   VA+VE+WRE E+REKWLS+F+  YAFPI+ PTGF IE GFRE+L+NWQR+
Sbjct: 225 LVDRDDESLCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRV 284

Query: 265 PYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVN 324
           PY +PY++++      S G++R EKR VAV+HELLSLTVEK+V+V+RL HFR+D  IEVN
Sbjct: 285 PYVKPYDRKE-----ISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVN 344

Query: 325 IRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQ 384
           +RE++LKHPG+FY+STKG++Q +FLREAY+KGCL+EPNPIY VRRKM DLVLL  R+++ 
Sbjct: 345 VREVILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRM 404

Query: 385 L-----ESSMEIKEND-NAADNGDWLSKSEGSWVLPIL 416
           L     E+  E K  D   + N DW    +G WVLPIL
Sbjct: 405 LLQREDETHREEKSRDVLISSNEDWEGGRDGDWVLPIL 437

[Close]

BLAST of IVF0004293 vs. TAIR 10
Match: AT5G45790.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 412.1 bits (1058), Expect = 5.2e-115
Identity = 196/341 (57.48%), Postives = 266/341 (78.01%), Query Frame = 0


Query: 82  FVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENV 141
           F + ++MSRW+N+VG+ + +G F+ KYPH F++F HP  +NLCC+IT K   L+ +EENV
Sbjct: 17  FSTNKLMSRWKNLVGLNVNVGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENV 76

Query: 142 INDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE 201
           + + E++ V+R+KKLL++S +G L VHALRLI +ELGLP+ FR+SIL KYS +FRLVDLE
Sbjct: 77  VRECEVDAVKRVKKLLLLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLE 136

Query: 202 IVELVEKHEDG-AVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNW 261
            +ELV++ ++   VA+VE+WRE E+REKWLS+F+  YAFPI+ PTGF IE GFRE+L+NW
Sbjct: 137 TLELVDRDDESLCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNW 196

Query: 262 QRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAI 321
           QR+PY +PY++++      S G++R EKR VAV+HELLSLTVEK+V+V+RL HFR+D  I
Sbjct: 197 QRVPYVKPYDRKE-----ISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGI 256

Query: 322 EVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRH 381
           EVN+RE++LKHPG+FY+STKG++Q +FLREAY+KGCL+EPNPIY VRRKM DLVLL  R+
Sbjct: 257 EVNVREVILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRY 316

Query: 382 TKQL-----ESSMEIKEND-NAADNGDWLSKSEGSWVLPIL 416
           ++ L     E+  E K  D   + N DW    +G WVLPIL
Sbjct: 317 SRMLLQREDETHREEKSRDVLISSNEDWEGGRDGDWVLPIL 352

[Close]

BLAST of IVF0004293 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 240.0 bits (611), Expect = 3.5e-63
Identity = 138/359 (38.44%), Postives = 206/359 (57.38%), Query Frame = 0


Query: 36  KPVVSAQT--RLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRGPFV--SLQIMSRW 95
           KP   + T  + + R RD   D      +K R ++K H L+ ++         L  ++R 
Sbjct: 32  KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query: 96  RNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 155
             +   +   G FL K+PHVF+++ HPV+R L CR+T K    ++ E   + D   + V 
Sbjct: 92  LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT 151

Query: 156 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE-----IVELV 215
           RL+KL+MMS  G + +  +R+   E GLP+ F  S++ K+   FRL+D E      +E+V
Sbjct: 152 RLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIV 211

Query: 216 EKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYT 275
           EK  + ++  +E+ RE E+R K +   DV+++F +NFP GF I   FR  +  WQRLPY 
Sbjct: 212 EKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYW 271

Query: 276 QPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVNIRE 335
            PYE    +  RS     R EKR+VA +HELLSLTVEK + ++R+ HFR    +   ++E
Sbjct: 272 SPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKE 331

Query: 336 LLLKHPGVFYISTKGT---TQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 383
            LL+H G+FYIST+G       VFLRE Y +G LVEPN +Y+ RR++ +LVL+  R  K
Sbjct: 332 FLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

[Close]

BLAST of IVF0004293 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 235.3 bits (599), Expect = 8.7e-62
Identity = 141/371 (38.01%), Postives = 211/371 (56.87%), Query Frame = 0


Query: 35  RKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRKRG--PFVSLQIMSRWR 94
           R    SAQ  +  R+RD   +KL  + +    ++ + +L         P +S++ +SR  
Sbjct: 22  RSTTTSAQ-YVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLS 81

Query: 95  NIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQR 154
             + +  G   FL KYPH+F V   PV+    CR+T     + +QE   I       V R
Sbjct: 82  QKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDR 141

Query: 155 LKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVD-----LEIVELVE 214
           L +LL MS++ ++ + A+  + RELGLPD F +S++ K    F+L D       I+ELV+
Sbjct: 142 LVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQ 201

Query: 215 KHEDGA--VAEVEKWREREFREKWLS--EFDVKYAFPINFPTGFIIEGGFREKLRNWQRL 274
           + E      A VEKWR  E  ++  S    +++++F  ++P G  +   F+ K++ WQRL
Sbjct: 202 EEEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRL 261

Query: 275 PYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDFAIEVN 334
           PY  PYE       +S  GV   EKRAVA+ HE L+LTVEK+V+V+++ HFR+ F I++N
Sbjct: 262 PYVGPYEDMVG-KKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLN 321

Query: 335 IRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQ 394
           IR+L L HPG+FY+STKG    VFLREAY +G L++PNP+Y  RRK+ DLVLLGR     
Sbjct: 322 IRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARRKLLDLVLLGRHAALS 381

[Close]

BLAST of IVF0004293 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 155.6 bits (392), Expect = 8.7e-38
Identity = 102/317 (32.18%), Postives = 167/317 (52.68%), Query Frame = 0


Query: 78  KRGP--FVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNL-CCRITGKMTAL 137
           KR P  F++ + ++ W+ ++G+ + +  FL +YP +F  FPH    +L C ++T     L
Sbjct: 62  KRSPTGFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALML 121

Query: 138 MKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDD 197
             QEE +    E +TV+RL ++LMM  + T+ + +L  +  +LGLPD + ++++ KY D 
Sbjct: 122 DSQEEIIHQSHEADTVERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDH 181

Query: 198 FRLVDLE----IVELVEKHEDGAVAEVEKWRE------REFREKWLSEFDVKYAFPINFP 257
           F  V        ++LV+  ++ A + ++K  E       E R +          FP++FP
Sbjct: 182 FCFVKASNGNPCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFP 241

Query: 258 TGFIIEGGFREKLRNW----QRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 317
            G+    G ++K++ W    Q+LPY  PY+        S       EKRAVAVLHELLSL
Sbjct: 242 RGY----GAQKKVKAWMDEFQKLPYISPYDDPSNIDPES----DLMEKRAVAVLHELLSL 301

Query: 318 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 377
           T+ K    + L   R +  I      L  ++PG+FY+S K  T  V L+E Y +G LV+P
Sbjct: 302 TIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGIFYLSLKCKTTTVILKEGYRRGKLVDP 361

The following BLAST results are available for this feature:

BLAST of IVF0004293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q689D6	5.0e-62	38.44	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q65XL5	1.5e-37	30.83	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	1.2e-36	32.02	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	5.2e-35	30.59	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9ZUZ6	8.5e-22	28.25	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of IVF0004293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7J9	7.3e-242	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4...	[more]
A0A0A0LFE1	1.4e-232	95.47	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 S...	[more]
A0A5A7UFE6	7.6e-231	100.00	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1FCB5	5.3e-208	87.41	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I6W3	3.2e-205	86.44	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of IVF0004293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443210.1	1.36e-311	100.00	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PR...	[more]
XP_004136766.1	2.13e-299	95.47	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein RO...	[more]
KAA0053914.1	8.88e-297	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 prote...	[more]
XP_038903898.1	2.50e-282	90.69	protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ...	[more]
XP_022937832.1	3.85e-267	87.41	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_02293784...	[more]

BLAST of IVF0004293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45790.2	3.1e-136	58.04	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.1	5.2e-115	57.48	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G33495.1	3.5e-63	38.44	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G06440.1	8.7e-62	38.01	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	8.7e-38	32.18	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 50..378 e-value: 1.2E-107 score: 359.7
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 18..418
None	No IPR available	PANTHER	PTHR31476:SF12	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 18..418

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004293.2	IVF0004293.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding