Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGTGAGCTTTCAGGTTTGTTTGCAAATCCTAGGAAAAGCTCTATTTTCATTGCAGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG
mRNA sequence
ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG
Coding sequence (CDS)
ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG
Protein sequence
MIFCVVNEPSIRFIRECLQRFGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
Homology
BLAST of IVF0004282 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 24/74 (32.43%), Postives = 45/74 (60.81%), Query Frame = 0
Query: 49 LPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPA 108
+P+L R+ + +++R++SR+ + LSFAGRL L +VL S+ V+ +LP
Sbjct: 1 MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60
Query: 109 YVHNEVDKILRSYL 123
+ N +D++ R++L
Sbjct: 61 SILNRLDQLSRTFL 74
BLAST of IVF0004282 vs. ExPASy TrEMBL
Match:
A0A5D3CLU1 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00420 PE=4 SV=1)
HSP 1 Score: 210.3 bits (534), Expect = 4.5e-51
Identity = 111/140 (79.29%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
MIFC +EPSIRFIRECLQ+F GVNNENAS+LAACMGFVRGNL
Sbjct: 384 MIFCAADEPSIRFIRECLQKFGELSGLFANPRKSFIFVAGVNNENASQLAACMGFVRGNL 443
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
PVRYLGLPLLTGRLRSNDC P+IQRITSRIRS ARVLSFAGRLQLVCSVL SLQVYWA
Sbjct: 444 PVRYLGLPLLTGRLRSNDCAPMIQRITSRIRSWIARVLSFAGRLQLVCSVLRSLQVYWAS 503
Query: 121 VFVLPAYVHNEVDKILRSYL 123
VFVLPAYVHNEVDKILRSYL
Sbjct: 504 VFVLPAYVHNEVDKILRSYL 523
BLAST of IVF0004282 vs. ExPASy TrEMBL
Match:
A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+F GVNNENAS LAACMGFVRGNL
Sbjct: 1062 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 1121
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSFAGR+QLVCSVL SLQVYWA
Sbjct: 1122 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 1181
Query: 121 VFVLPAYVHNEVDKILRSYL 123
VFVLPAYVHNEVDKILRSYL
Sbjct: 1182 VFVLPAYVHNEVDKILRSYL 1201
BLAST of IVF0004282 vs. ExPASy TrEMBL
Match:
A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+F GVNNENAS LAACMGFVRGNL
Sbjct: 1061 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 1120
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSFAGR+QLVCSVL SLQVYWA
Sbjct: 1121 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 1180
Query: 121 VFVLPAYVHNEVDKILRSYL 123
VFVLPAYVHNEVDKILRSYL
Sbjct: 1181 VFVLPAYVHNEVDKILRSYL 1200
BLAST of IVF0004282 vs. ExPASy TrEMBL
Match:
A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 3.0e-47
Identity = 106/140 (75.71%), Postives = 111/140 (79.29%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+F GVNNENAS LA CMGF RGNL
Sbjct: 962 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFARGNL 1021
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
PVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSFAGRLQLV SVL SLQVYWA
Sbjct: 1022 PVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLRSLQVYWAS 1081
Query: 121 VFVLPAYVHNEVDKILRSYL 123
VFVLPAYVHNEVDKILRSYL
Sbjct: 1082 VFVLPAYVHNEVDKILRSYL 1101
BLAST of IVF0004282 vs. ExPASy TrEMBL
Match:
A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 3.0e-47
Identity = 106/140 (75.71%), Postives = 111/140 (79.29%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+F GVNNENAS LA CMGF RGNL
Sbjct: 962 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFARGNL 1021
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
PVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSFAGRLQLV SVL SLQVYWA
Sbjct: 1022 PVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLRSLQVYWAS 1081
Query: 121 VFVLPAYVHNEVDKILRSYL 123
VFVLPAYVHNEVDKILRSYL
Sbjct: 1082 VFVLPAYVHNEVDKILRSYL 1101
BLAST of IVF0004282 vs. NCBI nr
Match:
TYK12108.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 208 bits (530), Expect = 1.04e-60
Identity = 111/140 (79.29%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
MIFC +EPSIRFIRECLQ+FG VNNENAS+LAACMGFVRGNL
Sbjct: 384 MIFCAADEPSIRFIRECLQKFGELSGLFANPRKSFIFVAGVNNENASQLAACMGFVRGNL 443
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
PVRYLGLPLLTGRLRSNDC P+IQRITSRIRS ARVLSFAGRLQLVCSVL SLQVYWA
Sbjct: 444 PVRYLGLPLLTGRLRSNDCAPMIQRITSRIRSWIARVLSFAGRLQLVCSVLRSLQVYWAS 503
Query: 121 VFVLPAYVHNEVDKILRSYL 122
VFVLPAYVHNEVDKILRSYL
Sbjct: 504 VFVLPAYVHNEVDKILRSYL 523
BLAST of IVF0004282 vs. NCBI nr
Match:
TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])
HSP 1 Score: 196 bits (499), Expect = 2.13e-55
Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+FG VNNENAS LAACMGFVRGNL
Sbjct: 1061 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 1120
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSFAGR+QLVCSVL SLQVYWA
Sbjct: 1121 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 1180
Query: 121 VFVLPAYVHNEVDKILRSYL 122
VFVLPAYVHNEVDKILRSYL
Sbjct: 1181 VFVLPAYVHNEVDKILRSYL 1200
BLAST of IVF0004282 vs. NCBI nr
Match:
KAA0046247.1 (uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa])
HSP 1 Score: 196 bits (499), Expect = 2.13e-55
Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+FG VNNENAS LAACMGFVRGNL
Sbjct: 1062 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 1121
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSFAGR+QLVCSVL SLQVYWA
Sbjct: 1122 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 1181
Query: 121 VFVLPAYVHNEVDKILRSYL 122
VFVLPAYVHNEVDKILRSYL
Sbjct: 1182 VFVLPAYVHNEVDKILRSYL 1201
BLAST of IVF0004282 vs. NCBI nr
Match:
KAA0062318.1 (uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa])
HSP 1 Score: 195 bits (495), Expect = 3.70e-55
Identity = 107/140 (76.43%), Postives = 109/140 (77.86%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
MIFC NEPSIRFIRECLQ+FG VNNENAS LA CMGFVRGNL
Sbjct: 452 MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 511
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
VRYLGLPLL GRLRSND PLIQRITSRIRS +ARVLSFAGRLQLV SVL S QVYWA
Sbjct: 512 SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWAS 571
Query: 121 VFVLPAYVHNEVDKILRSYL 122
VFVLPAYVHNEVDKILRSYL
Sbjct: 572 VFVLPAYVHNEVDKILRSYL 591
BLAST of IVF0004282 vs. NCBI nr
Match:
TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 196 bits (497), Expect = 3.94e-55
Identity = 106/140 (75.71%), Postives = 111/140 (79.29%), Query Frame = 0
Query: 1 MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
MIFC +E SIRFIR+CLQ+FG VNNENAS LA CMGF RGNL
Sbjct: 962 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFARGNL 1021
Query: 61 PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
PVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSFAGRLQLV SVL SLQVYWA
Sbjct: 1022 PVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLRSLQVYWAS 1081
Query: 121 VFVLPAYVHNEVDKILRSYL 122
VFVLPAYVHNEVDKILRSYL
Sbjct: 1082 VFVLPAYVHNEVDKILRSYL 1101
BLAST of IVF0004282 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 84.3 bits (207), Expect = 7.2e-17
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 0
Query: 22 GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
GV + + + + F G LPVRYLGLPLLT ++ ++D PL+++I RI +AR LS
Sbjct: 3 GVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLS 62
Query: 82 FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
FAGRLQL+ SV+ SL +W F LP+ E+D I S+L
Sbjct: 63 FAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFL 103
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 3.1e-04 | 32.43 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3CLU1 | 4.5e-51 | 79.29 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5A7TWG5 | 1.8e-47 | 75.71 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5D3D5X6 | 1.8e-47 | 75.71 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5A7SPE5 | 3.0e-47 | 75.71 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5D3DXE4 | 3.0e-47 | 75.71 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
Match Name | E-value | Identity | Description | |
TYK12108.1 | 1.04e-60 | 79.29 | non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... | [more] |
TYK18951.1 | 2.13e-55 | 75.71 | uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa] | [more] |
KAA0046247.1 | 2.13e-55 | 75.71 | uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa] | [more] |
KAA0062318.1 | 3.70e-55 | 76.43 | uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa] | [more] |
TYK28099.1 | 3.94e-55 | 75.71 | uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 7.2e-17 | 45.54 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |