IVF0004248 (gene) Melon (IVF77) v1

Overview
NameIVF0004248
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionsmall acidic protein 1
Locationchr05: 6510982 .. 6511783 (-)
RNA-Seq ExpressionIVF0004248
SyntenyIVF0004248
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGACAAGAGTGAAAATTTACCACAAGAAGTTGGTTGTAATATAGATTTTAGAAATGAGTCATTATAGAACTTGTTTTAATATTTAGGTTACTTTATCAAGGTTTCTTCTCAAATTCCCATTCGGCCAAGTTACAAATTCAAACAAGTCTATTTGGTTTCCATTGTTCATTTGGTTGCCACGGAGATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCCACGGTCGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGATGATTTTGATGACTCTGACGTCAACTGAGATTCTTTTTCGTGGTTTCCTTCAAAACAAGTAGTTAATTTCCCAATTCTATGTTCTTACTTCTCTTGATCAAACAAAGTTGATAGATCCTACCATGCCCTAGTTTGTTTCAGTCTTTAGGGATTTCACTGGTTTGCTTGGTGATAAGTTGAATACTTTTAACATGTTTTACTTTCTGAATTACTTGATTGGTTATCCCATAGTTTCTTTTCTCTCAAGCGTGGTGGTTAGCCTTGTAATTGTCATTAGTTGCAACGAAAAAGGGGAATGTGTTTATATATAACAGAAAATGTGAGAAACTGTGTACTTTGTTGCCACATAATTTTAGAGTGATTTTGAAATAGTTAAAATCTCTTCTTTCATTGTCATCGAAAACATTCAAAACCAGTATAATGTTCGATTTTACCCTCTTAAATACAATTTTCATA

mRNA sequence

AGGACAAGAGTGAAAATTTACCACAAGAAGTTGGTTGTAATATAGATTTTAGAAATGAGTCATTATAGAACTTGTTTTAATATTTAGGTTACTTTATCAAGGTTTCTTCTCAAATTCCCATTCGGCCAAGTTACAAATTCAAACAAGTCTATTTGGTTTCCATTGTTCATTTGGTTGCCACGGAGATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCCACGGTCGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGATGATTTTGATGACTCTGACGTCAACTGAGATTCTTTTTCGTGGTTTCCTTCAAAACAAGTAGTTAATTTCCCAATTCTATGTTCTTACTTCTCTTGATCAAACAAAGTTGATAGATCCTACCATGCCCTAGTTTGTTTCAGTCTTTAGGGATTTCACTGGTTTGCTTGGTGATAAGTTGAATACTTTTAACATGTTTTACTTTCTGAATTACTTGATTGGTTATCCCATAGTTTCTTTTCTCTCAAGCGTGGTGGTTAGCCTTGTAATTGTCATTAGTTGCAACGAAAAAGGGGAATGTGTTTATATATAACAGAAAATGTGAGAAACTGTGTACTTTGTTGCCACATAATTTTAGAGTGATTTTGAAATAGTTAAAATCTCTTCTTTCATTGTCATCGAAAACATTCAAAACCAGTATAATGTTCGATTTTACCCTCTTAAATACAATTTTCATA

Coding sequence (CDS)

ATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCCACGGTCGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGATGATTTTGATGACTCTGACGTCAACTGA

Protein sequence

MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDVN
Homology
[Close]
BLAST of IVF0004248 vs. ExPASy Swiss-Prot
Match: Q9T0H2 (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 34/62 (54.84%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR   ++  +E+++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 61 VN 63
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. ExPASy Swiss-Prot
Match: Q1ECS0 (Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-04
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 7  EFFAELEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFEDDFDDSD 63
          +F  E+E  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FEDDFDDSD
Sbjct: 17 DFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFEDDFDDSD 76

[Close]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match: A0A5A7SMJ5 (Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00640 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 63
          VN
Sbjct: 61 VN 62

[Close]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match: A0A1S3CCM1 (small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 63
          VN
Sbjct: 61 VN 62

[Close]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match: A0A0A0LNK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 63
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match: A0A6J1KE12 (small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 63
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match: A0A6J1HIH2 (small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 63
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. NCBI nr
Match: XP_008460713.1 (PREDICTED: small acidic protein 1 [Cucumis melo] >KAA0031980.1 small acidic protein 1 [Cucumis melo var. makuwa] >TYK16800.1 small acidic protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 1.53e-33
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 62
          VN
Sbjct: 61 VN 62

[Close]
BLAST of IVF0004248 vs. NCBI nr
Match: XP_004147176.1 (small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical protein Csa_023613 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 2.17e-33
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 62
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. NCBI nr
Match: XP_038875245.1 (small acidic protein 1 [Benincasa hispida])

HSP 1 Score: 115 bits (288), Expect = 3.61e-32
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 62
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. NCBI nr
Match: XP_022964281.1 (small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein 1 [Cucurbita moschata] >XP_022964283.1 small acidic protein 1 [Cucurbita moschata] >XP_022964284.1 small acidic protein 1 [Cucurbita moschata] >XP_023000574.1 small acidic protein 1 [Cucurbita maxima] >XP_023000575.1 small acidic protein 1 [Cucurbita maxima] >XP_023000576.1 small acidic protein 1 [Cucurbita maxima] >XP_023000577.1 small acidic protein 1 [Cucurbita maxima])

HSP 1 Score: 114 bits (286), Expect = 7.30e-32
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 VN 62
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. NCBI nr
Match: XP_023513491.1 (small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513494.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513495.1 small acidic protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113 bits (283), Expect = 2.10e-31
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLAD+DFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADSDFFNSFEDDFDDSD 60

Query: 61 VN 62
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. TAIR 10
Match: AT4G13520.1 (small acidic protein 1 )

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-14
Identity = 34/62 (54.84%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR   ++  +E+++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 61 VN 63
          +N
Sbjct: 61 IN 62

[Close]
BLAST of IVF0004248 vs. TAIR 10
Match: AT3G24280.1 (small acidic protein 2 )

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 7  EFFAELEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFEDDFDDSD 63
          +F  E+E  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FEDDFDDSD
Sbjct: 17 DFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFEDDFDDSD 76

The following BLAST results are available for this feature:
BLAST of IVF0004248 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0H21.4e-1354.84Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1[more]
Q1ECS02.0e-0443.55Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1[more]
BLAST of IVF0004248 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SMJ52.4e-24100.00Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A1S3CCM12.4e-24100.00small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1[more]
A0A0A0LNK13.1e-2498.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1[more]
A0A6J1KE124.5e-2393.55small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1[more]
A0A6J1HIH24.5e-2393.55small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1[more]
BLAST of IVF0004248 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460713.11.53e-33100.00PREDICTED: small acidic protein 1 [Cucumis melo] >KAA0031980.1 small acidic prot... [more]
XP_004147176.12.17e-3398.39small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical protein Csa_02... [more]
XP_038875245.13.61e-3295.16small acidic protein 1 [Benincasa hispida][more]
XP_022964281.17.30e-3293.55small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein... [more]
XP_023513491.12.10e-3191.94small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic... [more]
BLAST of IVF0004248 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13520.11.0e-1454.84small acidic protein 1 [more]
AT3G24280.11.4e-0543.55small acidic protein 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004248.1IVF0004248.1mRNA