IVF0004243 (gene) Melon (IVF77) v1

Overview


Name	IVF0004243
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	chr02: 11721464 .. 11722204 (-)
RNA-Seq Expression	IVF0004243
Synteny	IVF0004243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTATTCTTCTTTTATGTAATTCTCTTAAGAAATTTAATGCAAGAATTCGTACTCCCCACTTGTTCTCTGTTTTTAATGGAAAAAAGATGAGGCCGTAATTCATTTCCACCGCCATTCACTTCAGATTTTCCATAACTGTCAATTGGCTATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAAAAACAATAATGGCAGAAAATTCGGAATCACTTCGGCAAAACGTACACAAGATTCCGATTCCACTTCATCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATGCAAAATTTTACCTCTAATTAATTTCGATTTGAGAATTGCTCTGTTTTATTTTTTTTGTTTTAACTCAAATTGAAGTCGAATTAGGGTTTGGAATGATTAGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACAGAAGAATTGCTTAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAAGTGTTTGGATGATGGATTCCCCAAAACGGTTAGAAATAATTTCAATTTAAAAATGGTAGGTGAGCTAAAGTTGTTCTTTTTGCTTAAAAGGGAGATCTTTG

mRNA sequence

TCACTATTCTTCTTTTATGTAATTCTCTTAAGAAATTTAATGCAAGAATTCGTACTCCCCACTTGTTCTCTGTTTTTAATGGAAAAAAGATGAGGCCGTAATTCATTTCCACCGCCATTCACTTCAGATTTTCCATAACTGTCAATTGGCTATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAAAAACAATAATGGCAGAAAATTCGGAATCACTTCGGCAAAACGTACACAAGATTCCGATTCCACTTCATCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACAGAAGAATTGCTTAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAAGTGTTTGGATGATGGATTCCCCAAAACGGTTAGAAATAATTTCAATTTAAAAATGGTAGGTGAGCTAAAGTTGTTCTTTTTGCTTAAAAGGGAGATCTTTG

Coding sequence (CDS)

ATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAAAAACAATAATGGCAGAAAATTCGGAATCACTTCGGCAAAACGTACACAAGATTCCGATTCCACTTCATCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACAGAAGAATTGCTTAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAA

Protein sequence

MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFSKFDSDSS

Homology

[Close]

BLAST of IVF0004243 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.0e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

Query: 121 KFDSDSS 128
           KFDSDSS
Sbjct: 121 KFDSDSS 127

[Close]

BLAST of IVF0004243 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.4e-55
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPS 60
           MAMVDSSFIFIG S VPHPLLN   NNNGRKFGITSAKRTQ  DSDS SSTQPNQFKFPS
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLN---NNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS 60

Query: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120
           LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFLVFS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFS 120

Query: 121 FSKFDSDSS 128
           FSK+DSDSS
Sbjct: 121 FSKYDSDSS 126

[Close]

BLAST of IVF0004243 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 101/127 (79.53%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 128
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of IVF0004243 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.3e-44
Identity = 100/127 (78.74%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           M + DSSFIF G+SA+PHPL+ +  NNN RKFG TSAKRT DSDS SST   Q KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ LKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 128
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of IVF0004243 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 89/125 (71.20%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 3   MVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVS 62
           M DS+FIF G SAV   L N    NN R F    AKRT DS +T S Q NQF+FPSLRV 
Sbjct: 1   MADSTFIFSGPSAVSRSLFN---VNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVP 60

Query: 63  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFSKF 122
           NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGAFLVVPFCVFL+ SF+K 
Sbjct: 61  NPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK- 120

Query: 123 DSDSS 128
            +DSS
Sbjct: 121 QTDSS 121

[Close]

BLAST of IVF0004243 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 250 bits (639), Expect = 1.09e-83
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

Query: 121 KFDSDSS 127
           KFDSDSS
Sbjct: 121 KFDSDSS 127

[Close]

BLAST of IVF0004243 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 224 bits (571), Expect = 2.48e-73
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDS--TSSTQPNQFKFPS 60
           MAMVDSSFIFIG S VPHPLLNNN   NGRKFGITSAKRTQDSDS   SSTQPNQFKFPS
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS 60

Query: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120
           LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFLVFS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFS 120

Query: 121 FSKFDSDSS 127
           FSK+DSDSS
Sbjct: 121 FSKYDSDSS 126

[Close]

BLAST of IVF0004243 vs. NCBI nr
Match: XP_038879768.1 (uncharacterized protein LOC120071517 [Benincasa hispida])

HSP 1 Score: 194 bits (492), Expect = 5.60e-61
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           MAMV+SSFIFIG+S VP+PL NNN   + RKF ITSAK T+DSDS S +  +Q KFPSLR
Sbjct: 27  MAMVNSSFIFIGVSTVPYPLSNNN---HSRKFRITSAKLTEDSDSDSKS--SQLKFPSLR 86

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+EELLKIGAFLVVPFCVFLVFSFS
Sbjct: 87  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGVITKESEELLKIGAFLVVPFCVFLVFSFS 146

Query: 121 KFDSDSS 127
           + DSDSS
Sbjct: 147 RLDSDSS 148

[Close]

BLAST of IVF0004243 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188 bits (477), Expect = 4.52e-59
Identity = 101/127 (79.53%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           M + DSSFIF G+SA+PHPLL +N  NN RKFG TSAKRT DSDS SSTQ    KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSN--NNARKFGTTSAKRTGDSDSISSTQ---LKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 127
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of IVF0004243 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 187 bits (474), Expect = 1.29e-58
Identity = 100/127 (78.74%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60
           M + DSSFIF G+SA+PHPL+ +N  NN RKFG TSAKRT DSDS SSTQ    KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSN--NNARKFGTTSAKRTGDSDSISSTQ---LKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120
           VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ LKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 127
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of IVF0004243 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 6.5e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 22  NNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDA 81
           N+NK  +        +KR   S+ ++  +P       ++V N ++ARS ++VL LGF+DA
Sbjct: 15  NDNKLRSFANGVTIMSKRRDFSEKSNEERP----ILRIKVPNTIVARSAIAVLSLGFIDA 74

Query: 82  GYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFSKFDSD 126
           GYSGDWSRIG I+KETEELLKI AFLVVP C+FL  SFS   +D
Sbjct: 75  GYSGDWSRIGVISKETEELLKIAAFLVVPLCIFLALSFSNDSTD 114

The following BLAST results are available for this feature:

BLAST of IVF0004243 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B903	7.0e-63	100.00	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A0A0LWH4	5.4e-55	91.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A6J1EZT4	3.3e-44	79.53	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1KT82	7.3e-44	78.74	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1C0R6	1.5e-36	71.20	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of IVF0004243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443827.1	1.09e-83	100.00	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_004146667.1	2.48e-73	91.47	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]
XP_038879768.1	5.60e-61	81.10	uncharacterized protein LOC120071517 [Benincasa hispida]	[more]
XP_022933449.1	4.52e-59	79.53	uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet...	[more]
XP_023004836.1	1.29e-58	78.74	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]

BLAST of IVF0004243 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30845.1	6.5e-21	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51
None	No IPR available	PANTHER	PTHR38389	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004243.1	IVF0004243.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane