IVF0004211 (gene) Melon (IVF77) v1

Overview


Name	IVF0004211
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 8683251 .. 8683565 (-)
RNA-Seq Expression	IVF0004211
Synteny	IVF0004211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGGTAGTTTTTCACAATCTTCTTCCTCAAAAGCAACTTCAAGGAAAACCCTAGCCGCCCCTCGCCACCGCCACCTCCTCCGTCGCGGCCTTCTTTATTTCGGTTCGTCGTCATCCGTCAGCCGGCTGCCTTCACGCGAGCCTCCAGCCGTAGACGCCCAAGCCAACAGCCGTCCTCATCGCCACGTTCTGTACGTCGAGCCGTCTGCAACCTTTAGTCGATCGTTCGCATCCGCTCGAGTTGTCTTCGTTGTCGTCCGTAGCCGTCTTATGTCGAGCCTTACTTTTCATCAATCGTTGCCGATCAAGTGA

mRNA sequence

ATGCGTGGTAGTTTTTCACAATCTTCTTCCTCAAAAGCAACTTCAAGGAAAACCCTAGCCGCCCCTCGCCACCGCCACCTCCTCCGTCGCGGCCTTCTTTATTTCGGTTCGTCGTCATCCGTCAGCCGGCTGCCTTCACGCGAGCCTCCAGCCGTAGACGCCCAAGCCAACAGCCGTCCTCATCGCCACGTTCTGTACGTCGAGCCGTCTGCAACCTTTAGTCGATCGTTCGCATCCGCTCGAGTTGTCTTCGTTGTCGTCCGTAGCCGTCTTATGTCGAGCCTTACTTTTCATCAATCGTTGCCGATCAAGTGA

Coding sequence (CDS)

ATGCGTGGTAGTTTTTCACAATCTTCTTCCTCAAAAGCAACTTCAAGGAAAACCCTAGCCGCCCCTCGCCACCGCCACCTCCTCCGTCGCGGCCTTCTTTATTTCGGTTCGTCGTCATCCGTCAGCCGGCTGCCTTCACGCGAGCCTCCAGCCGTAGACGCCCAAGCCAACAGCCGTCCTCATCGCCACGTTCTGTACGTCGAGCCGTCTGCAACCTTTAGTCGATCGTTCGCATCCGCTCGAGTTGTCTTCGTTGTCGTCCGTAGCCGTCTTATGTCGAGCCTTACTTTTCATCAATCGTTGCCGATCAAGTGA

Protein sequence

MRGSFSQSSSSKATSRKTLAAPRHRHLLRRGLLYFGSSSSVSRLPSREPPAVDAQANSRPHRHVLYVEPSATFSRSFASARVVFVVVRSRLMSSLTFHQSLPIK

Homology

[Close]

BLAST of IVF0004211 vs. ExPASy TrEMBL
Match: A0A5A7TFI2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006780 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 30 RGLLYFGSSSSVSRLPSREPPAVDAQANSRPHRHVLYVEPSATFSRS 77
          RG L    SSS SRL S EPPA DAQA SR H  VL++EPS TF+RS
Sbjct: 5  RGHLCLDPSSSASRLSSPEPPAADAQATSRSHHRVLHIEPSLTFNRS 51

[Close]

BLAST of IVF0004211 vs. NCBI nr
Match: KAA0042184.1 (hypothetical protein E6C27_scaffold67G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.93e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 30 RGLLYFGSSSSVSRLPSREPPAVDAQANSRPHRHVLYVEPSATFSRS 76
          RG L    SSS SRL S EPPA DAQA SR H  VL++EPS TF+RS
Sbjct: 5  RGHLCLDPSSSASRLSSPEPPAADAQATSRSHHRVLHIEPSLTFNRS 51

The following BLAST results are available for this feature:

BLAST of IVF0004211 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFI2	4.2e-05	63.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0004211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042184.1	2.93e-07	63.83	hypothetical protein E6C27_scaffold67G006780 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004211 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004211.1	IVF0004211.1	mRNA