IVF0004205 (gene) Melon (IVF77) v1

Overview


Name	IVF0004205
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Methyl-CpG-binding domain-containing protein 11-like
Location	chr02: 13566245 .. 13568473 (-)
RNA-Seq Expression	IVF0004205
Synteny	IVF0004205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCTCTCTCTCTCTGTCCTTGTCTCGACGAGCACAGCAAGAGAAAGAAAAAAAATTGGGAACGGTAAAGAAAATTTGTTGATCCATCCATCGAACGCCTTAAATGGGTCCCAAATTCCGACCCCAAATCCTTCTTTTATTTCTCTTTAGGCGCCACAAAGTTCGCTATTTCTCATCAATTATCCACAACAGATAGCTTTTTGTTGAAACTGAGAGACGGCGAGAGCTCTGTCTTTTGCCTCCGCTTTTTCATCCTTAGTGGGTATCTCCCTTTCTCCCCTTCTTTTTCGCTGCTTTTTGATGAGCTTCTTGATTCTCATTTGATTTGGGAAGTTGCAGAACATGGCGTGCACACTGGAAAAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGGTCTCCCCTATTTCTTCTTTTTATCTTACATTTTTGTCTCTCCTTTGAGCTTCCCTTTGCCCATTTGTTGTGCTGTGAATTTTCTGATACTTCTGTGTTAGAATTTGAAGCTTGATTACATTTATATGGAGGTTAGGGCTAATGGGTATCCCTGGAATTAAGCAGAATTTTAGAAGACTTGTGCTTTGGGGCTTAGGGGTTTGGGTTTTTTTTTCTTTTTCTTTATAGATTCTATTGAATCTATCTTTTTGTTTAGTACTCATTAGTCAGTTATCTTTTTGGGTTTGTTGGAAAAAGTTGGTGTTGGTTGTCTCTTTTCTTTATCGTCATTCTTTCTTTTCCTTTTTGGAATGTCTTGAATCTCTTATCCTGTGCTCTGAGTGATCAAACACGAAGTCTCCTTGCCCGGTTATCAAGTTGGGGTCCAGGCTGATGCACTCTAAATTAATAGAGTTGGGGTGCAACGCTTTTAAGATGAAATTGTATTTGTGTTATTTACATTATGATTTTGGTCAAATCGTTTAGGATAGATTGGTATATGAACTCTCCAACTCTAGATGCATCTTTCTAGGAATAAACTGCTCTCTCCTTTCGCTCACAAACATAGCTAATAGCTAACATATTAGTGTATCACATAATTCACTGTGTCGATTATGTTCACGTCTTCTATTTATCTTTGATTGTCAATTTATTAACAATACTCGCCGTTTCTCTTAAATGGTTCTTTCTAGTTGGGAGACCTTATTAGTATTCAACGGTTTGGTTTTTAGGTTAATTTTAGTGAGATTGCCTTGGTAGGGTCAATTGTCAATCAAGATAATTTGATTGATGCTATTGAGTTTTCATTTAGTTGAGATAAAATGAGGTCAAAAAATCTTAGTTTATGTGCAGTTTCTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGAGAGGAGATCCATAACAAAAGGCAGCTGGATCAGTATTTGAAATCACACCCAGGTAACCTAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCATATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTTGAAGAAGTTTGAGGATAAAGAGACGGTTGTTGTCCCAGACGGTTTTGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATAGCGAGGTGAAAGAAATACAAGTGGAGGGAAAGTATGAAAATAGAAAACTAGAAGATGAGAAGCTGAAAGCTGAAACCACCCCCACCCCTGCTGAAATGGCTGAAGAGGGGCGGCAAAGTGATGATGACGAATGCAAGAAGCTTGCTAAAACGGAGCAGGGAAGTGAGGGTTCTGAAGATGCAAGAAAAGAAAATCAAAATTTGGAAGGAACAAAAGGGGAATAGAAGGTTCAACTTCAAAATGATGCTAAGGAATCCATTCCAGAAGAAATAACAACTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTGCAGCAAAGAACATGATGAAAAGGTAAAAAAATTGACACAATTGGAAGTGGTGTGATAAGAGTCTGTGAAATTGATTTACATGTCTAGTTTGAACCGTTATCGGATTACCCGATTCATATGCTGAGACATCTATGTAATTATCATTTATAGGATAGTCATTGTATCTATCTGTATGTACCATCTTTGTATAAACCTATTAGTGTGCAACAATTTTATTGAAGTTGTTAACCTGAAATCCTCATCTCTCTCTTA

mRNA sequence

GCTCTCTCTCTCTCTGTCCTTGTCTCGACGAGCACAGCAAGAGAAAGAAAAAAAATTGGGAACGGTAAAGAAAATTTGTTGATCCATCCATCGAACGCCTTAAATGGGTCCCAAATTCCGACCCCAAATCCTTCTTTTATTTCTCTTTAGGCGCCACAAAGTTCGCTATTTCTCATCAATTATCCACAACAGATAGCTTTTTGTTGAAACTGAGAGACGGCGAGAGCTCTGTCTTTTGCCTCCGCTTTTTCATCCTTAGTGGGTATCTCCCTTTCTCCCCTTCTTTTTCGCTGCTTTTTGATGAGCTTCTTGATTCTCATTTGATTTGGGAAGTTGCAGAACATGGCGTGCACACTGGAAAAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGAGAGGAGATCCATAACAAAAGGCAGCTGGATCAGTATTTGAAATCACACCCAGGTAACCTAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCATATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTTGAAGAAGTTTGAGGATAAAGAGACGGTTGTTGTCCCAGACGGTTTTGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATAGCGAGGTGAAAGAAATACAAGTGGAGGGAAAGTATGAAAATAGAAAACTAGAAGATGAGAAGCTGAAAGCTGAAACCACCCCCACCCCTGCTGAAATGGCTGAAGAGGGGCGGCAAAGTGATGATGACGAATGCAAGAAGCTTGCTAAAACGGAGCAGGGAAGTGAGGGTTCTGAAGATGCAAGAAAAGAAAATCAAAATTTGGAAGGAACAAAAGGGGAATAGAAGGTTCAACTTCAAAATGATGCTAAGGAATCCATTCCAGAAGAAATAACAACTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTGCAGCAAAGAACATGATGAAAAGGTAAAAAAATTGACACAATTGGAAGTGGTGTGATAAGAGTCTGTGAAATTGATTTACATGTCTAGTTTGAACCGTTATCGGATTACCCGATTCATATGCTGAGACATCTATGTAATTATCATTTATAGGATAGTCATTGTATCTATCTGTATGTACCATCTTTGTATAAACCTATTAGTGTGCAACAATTTTATTGAAGTTGTTAACCTGAAATCCTCATCTCTCTCTTA

Coding sequence (CDS)

ATGGCGTGCACACTGGAAAAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGAGAGGAGATCCATAACAAAAGGCAGCTGGATCAGTATTTGAAATCACACCCAGGTAACCTAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCATATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTTGAAGAAGTTTGAGGATAAAGAGACGGTTGTTGTCCCAGACGGTTTTGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATAGCGAGGTGAAAGAAATACAAGTGGAGGGAAAGTATGAAAATAGAAAACTAGAAGATGAGAAGCTGAAAGCTGAAACCACCCCCACCCCTGCTGAAATGGCTGAAGAGGGGCGGCAAAGTGATGATGACGAATGCAAGAAGCTTGCTAAAACGGAGCAGGGAAGTGAGGGTTCTGAAGATGCAAGAAAAGAAAATCAAAATTTGGAAGGAACAAAAGGGGAATAG

Protein sequence

MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEGRQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE

Homology

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BLAST of IVF0004205 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 90/210 (42.86%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGNLAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI +++QL+QYLK+HPGN   
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDGFEE 131
           SEF+W TGETPRRS+RIS+K KAT P+P  E P  + R+ +L KK ++KE     +  EE
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKK-DNKEAA---EKNEE 124

Query: 132 AGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEGRQSDDDECKKL 191
           A V          E  ++  +GK EN + E EK K   T   AE  +E  + +  E +K+
Sbjct: 125 AAV---------KENMDVDKDGKTENAEAEKEKEKEGVTEI-AEAEKENNEGEKTEAEKV 184

Query: 192 ----AKTEQGSEGSEDARKENQNLEGTKGE 218
                KTE G EG  +  +  +  EG K E
Sbjct: 185 NKEGEKTEAGKEGQTEIAEAEKEKEGEKAE 199

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BLAST of IVF0004205 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 96/220 (43.64%), Postives = 123/220 (55.91%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  LASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDG 128
            A +EFDW T  TPRRSARISEK KAT PSP  E PKKR R ++ + K +D E      G
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSK-KDAEGEKSEGG 121

Query: 129 FEEAGVHKEDETNVDSEVKE----IQVEGKYENRKLED--EKLKAETTPTPAEMAEEGR- 188
            EE    K+ E N    + E        G  E  ++ D  E + AE TP  A + EEG  
Sbjct: 122 GEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGES 181

Query: 189 ------QSDDDECKKLAK-TEQGSEGSEDARKENQNLEGT 215
                  S DD+ K+  K  + GS        E + +E +
Sbjct: 182 MKEKALDSVDDKSKETDKEKDTGSIEKNSVDVEKKTVEAS 219

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BLAST of IVF0004205 vs. ExPASy TrEMBL
Match: A0A1S3B9A2 (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103487437 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.3e-113
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA TLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 218
           RQSDDDECKKLAKT+QGSEGSEDARKENQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

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BLAST of IVF0004205 vs. ExPASy TrEMBL
Match: A0A5A7U4J5 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001110 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.3e-113
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA TLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 218
           RQSDDDECKKLAKT+QGSEGSEDARKENQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

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BLAST of IVF0004205 vs. ExPASy TrEMBL
Match: A0A6J1CUB2 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014413 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.8e-58
Identity = 144/229 (62.88%), Postives = 168/229 (73.36%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA T+ K+GS ED+LFLELPAPPGW KKFLPKLDGITKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTV-KEGSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGN ASSEFDWGTGETPR+SARISE+ KA  P P IE PKKRTRK A+ KK +DK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAA-PLPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 ETVVVPDGFEEA-GVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTP----AE 180
           E  VV DG EEA  VHK+D    +S V +   +G  ENR L+DE ++    P P    +E
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGVTD--GKGNQENRTLQDEDVETAPAPAPVLASSE 197

Query: 181 MAEEGRQSDDDECKKLAKTEQGS-------EGSEDARKENQNLEGTKGE 218
            AEEG+Q D +EC+  A+ E GS       EGSEDA K ++NL+GTKGE
Sbjct: 198 PAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGE 241

[Close]

BLAST of IVF0004205 vs. ExPASy TrEMBL
Match: A0A7N2L1T6 (MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 116/233 (49.79%), Postives = 152/233 (65.24%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA ++E+ G +E+V+ +ELPAPPGW KKFLPK  G  KKNEIIF +PTGEEI +KRQL+Q
Sbjct: 1   MASSVEEAG-REEVVSVELPAPPGWKKKFLPKQSGTPKKNEIIFTSPTGEEIVSKRQLEQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLK+HPG   +SEFDWGTGETPRRSARISEK KATPP P  E PKKR+RK +  K  +DK
Sbjct: 61  YLKAHPGGPTASEFDWGTGETPRRSARISEKTKATPP-PESETPKKRSRKSSAKK--DDK 120

Query: 121 ETVVVPDGFEEA-GVHKED-----ETNVDSEVKEIQVEGKYENRKLEDEKLKAET-TPTP 180
           E    P+G EE   VH ED     + NVD++ +++ V+   E+ K +D   K E   P  
Sbjct: 121 EKETAPEGTEETKEVHMEDAEKSEKDNVDAKTEKVDVKQNQEDNKAQDTDTKTEAIPPEE 180

Query: 181 AEMAEEGR-QSDDDECKKLAKTE----------QGSEGSEDARKENQNLEGTK 216
            ++  EG   +D +E KK ++ E          + +EGS+  + EN+ LEG K
Sbjct: 181 GKVGLEGNIPNDAEESKKTSEAELESSKETLVGKEAEGSKVTQNENEKLEGEK 229

[Close]

BLAST of IVF0004205 vs. ExPASy TrEMBL
Match: A0A5N5FKU9 (Methyl-CpG-binding domain-containing protein 11-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042918 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA ++EK+G KE+V+ LELPAP GW KKFLP+  G  KKNEI+F APTGEEI +KRQL+Q
Sbjct: 21  MASSVEKEGGKEEVVSLELPAPSGWVKKFLPRQSGTPKKNEIVFTAPTGEEITSKRQLEQ 80

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLK+HPG  A+SEFDWGTGETPRRSARISEKAKATPP    E PKKR+RK    KK EDK
Sbjct: 81  YLKAHPGGPAASEFDWGTGETPRRSARISEKAKATPPPIESEPPKKRSRKSTSAKK-EDK 140

Query: 121 ETVVVPDGFEEAGV 135
           E    P+G EE  +
Sbjct: 141 EKEAAPEGAEETKI 153

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BLAST of IVF0004205 vs. NCBI nr
Match: XP_008443980.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >XP_008443981.1 PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >KAA0050154.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa] >TYK06410.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 417 bits (1072), Expect = 9.29e-147
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA TLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 217
           RQSDDDECKKLAKT+QGSEGSEDARKENQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

[Close]

BLAST of IVF0004205 vs. NCBI nr
Match: XP_004150031.1 (methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 hypothetical protein Csa_019891 [Cucumis sativus])

HSP 1 Score: 354 bits (908), Expect = 3.14e-121
Identity = 190/217 (87.56%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA TLEKQGSKE +LFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGE IHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGN ASSEFDW TGETPRRSARISEKAKATPPSP IER KKRTRKQAL KK E K
Sbjct: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           ETVVVP G EE GVHKEDETNVDSEVKEI  E KYENRKLEDE  KAETTPTPAEMAEEG
Sbjct: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 217
            + D DE +KLAKT+QGSEGSEDARKENQNLEGT GE
Sbjct: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGE 217

[Close]

BLAST of IVF0004205 vs. NCBI nr
Match: XP_038880161.1 (methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispida])

HSP 1 Score: 337 bits (863), Expect = 2.65e-114
Identity = 176/217 (81.11%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA T EKQGSKEDVLF+ELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGN ASSEFDWGTGETPRRSARISEKAKA PPSP IERPKKRTRKQ L +K ++K
Sbjct: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 120

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           E  VVPDGFEE GVHKE+ET VD +VK+I VEG  EN KL++E +K ET PTP E+AEEG
Sbjct: 121 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 180

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 217
           R  D DEC+KLA+TEQ SEGSE+ARKENQ+LEGTKGE
Sbjct: 181 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGE 217

[Close]

BLAST of IVF0004205 vs. NCBI nr
Match: XP_038880160.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispida])

HSP 1 Score: 337 bits (863), Expect = 9.14e-114
Identity = 176/217 (81.11%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA T EKQGSKEDVLF+ELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 37  MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 96

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGN ASSEFDWGTGETPRRSARISEKAKA PPSP IERPKKRTRKQ L +K ++K
Sbjct: 97  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 156

Query: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180
           E  VVPDGFEE GVHKE+ET VD +VK+I VEG  EN KL++E +K ET PTP E+AEEG
Sbjct: 157 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 216

Query: 181 RQSDDDECKKLAKTEQGSEGSEDARKENQNLEGTKGE 217
           R  D DEC+KLA+TEQ SEGSE+ARKENQ+LEGTKGE
Sbjct: 217 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGE 253

[Close]

BLAST of IVF0004205 vs. NCBI nr
Match: XP_022144823.1 (methyl-CpG-binding domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 236 bits (601), Expect = 1.64e-73
Identity = 147/231 (63.64%), Postives = 169/231 (73.16%), Query Frame = 0


Query: 1   MACTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60
           MA T+ K+GS ED+LFLELPAPPGW KKFLPKLDGITKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTV-KEGSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120
           YLKSHPGN ASSEFDWGTGETPR+SARISE+ KA P  P IE PKKRTRK A+ KK +DK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAAP-LPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 ETVVVPDGFEEA-GVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPA----- 180
           E  VV DG EEA  VHK+D    +S V + +  G  ENR L+DE +  ET P PA     
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGVTDGK--GNQENRTLQDEDV--ETAPAPAPVLAS 197

Query: 181 -EMAEEGRQSDDDECKKLAKTEQGS-------EGSEDARKENQNLEGTKGE 217
            E AEEG+Q D +EC+  A+ E GS       EGSEDA K ++NL+GTKGE
Sbjct: 198 SEPAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGE 241

[Close]

BLAST of IVF0004205 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-32
Identity = 90/210 (42.86%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGNLAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI +++QL+QYLK+HPGN   
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDGFEE 131
           SEF+W TGETPRRS+RIS+K KAT P+P  E P  + R+ +L KK ++KE     +  EE
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKK-DNKEAA---EKNEE 124

Query: 132 AGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEGRQSDDDECKKL 191
           A V          E  ++  +GK EN + E EK K   T   AE  +E  + +  E +K+
Sbjct: 125 AAV---------KENMDVDKDGKTENAEAEKEKEKEGVTEI-AEAEKENNEGEKTEAEKV 184

Query: 192 ----AKTEQGSEGSEDARKENQNLEGTKGE 218
                KTE G EG  +  +  +  EG K E
Sbjct: 185 NKEGEKTEAGKEGQTEIAEAEKEKEGEKAE 199

[Close]

BLAST of IVF0004205 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-31
Identity = 96/220 (43.64%), Postives = 123/220 (55.91%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  LASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDG 128
            A +EFDW T  TPRRSARISEK KAT PSP  E PKKR R ++ + K +D E      G
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSK-KDAEGEKSEGG 121

Query: 129 FEEAGVHKEDETNVDSEVKE----IQVEGKYENRKLED--EKLKAETTPTPAEMAEEGR- 188
            EE    K+ E N    + E        G  E  ++ D  E + AE TP  A + EEG  
Sbjct: 122 GEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGES 181

Query: 189 ------QSDDDECKKLAK-TEQGSEGSEDARKENQNLEGT 215
                  S DD+ K+  K  + GS        E + +E +
Sbjct: 182 MKEKALDSVDDKSKETDKEKDTGSIEKNSVDVEKKTVEAS 219

[Close]

BLAST of IVF0004205 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-12
Identity = 62/208 (29.81%), Postives = 104/208 (50.00%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQYLKSHPGNLAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI +++QL+QYLK +      
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKDN------ 64

Query: 72  SEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDKETVVVPDGFE- 131
                      + +A  +E+A A   +  +++  K    +A  +K ++  T +     E 
Sbjct: 65  -----------KEAAEKNEEA-AVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKEN 124

Query: 132 -EAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEK--LKAETTPTPAEMAEEGRQSDDDE 191
            E    + ++ N + E  E   EG+ E  + E EK   KAE     AE+  + ++S + +
Sbjct: 125 NEGEKTEAEKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESMEVD 184

Query: 192 CKKLAKTEQGSEGSEDARKENQNLEGTK 216
             +L K     EG+E+  K    +EG K
Sbjct: 185 TSELEKKAGSGEGAEEPSK----VEGLK 190

The following BLAST results are available for this feature:

BLAST of IVF0004205 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI36	5.2e-31	42.86	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LW00	2.6e-30	43.64	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0004205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9A2	4.3e-113	99.08	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7U4J5	4.3e-113	99.08	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]
A0A6J1CUB2	1.8e-58	62.88	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]
A0A7N2L1T6	1.8e-42	49.79	MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5N5FKU9	3.4e-41	67.16	Methyl-CpG-binding domain-containing protein 11-like OS=Pyrus ussuriensis x Pyru...	[more]

BLAST of IVF0004205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443980.1	9.29e-147	99.08	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_004150031.1	3.14e-121	87.56	methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 ...	[more]
XP_038880161.1	2.65e-114	81.11	methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispi...	[more]
XP_038880160.1	9.14e-114	81.11	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispi...	[more]
XP_022144823.1	1.64e-73	63.64	methyl-CpG-binding domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of IVF0004205 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15340.1	3.7e-32	42.86	methyl-CPG-binding domain 10	[more]
AT3G15790.1	1.8e-31	43.64	methyl-CPG-binding domain 11	[more]
AT1G15340.2	9.5e-12	29.81	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 5..121 e-value: 2.5E-11 score: 45.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..111
None	No IPR available	CDD	cd00122	MBD	coord: 17..76 e-value: 2.96482E-13 score: 60.4157
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 18..80 e-value: 2.1E-9 score: 36.9
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 11..81 score: 12.813844
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 9..208
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 12..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004205.3	IVF0004205.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding