IVF0004197 (gene) Melon (IVF77) v1

Overview


Name	IVF0004197
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Replication protein A 32 kDa subunit B-like
Location	chr02: 19164378 .. 19168216 (+)
RNA-Seq Expression	IVF0004197
Synteny	IVF0004197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATGGTGAAGTGGTGGGATATCTAGGTTTTACCGAAGCAAAATTTCATTTCTCAAACTGCTCTTCAAACTGCTCTCGATCACTCACTTCGATTCTCTTGTAGGGTTTCATTATTCTTCACTCCTACCTTTACAGGGGAAGAACGATGTATGCAAGTCAATTCGACGGCAACGCTGCCTTCTCCGGTGGTGGATTTATGCCATCTCAGACCACCCAGGCCCCTGATCACTCATTCTCTCCGGCCAAAGTACGTTCTATCTTCATATATAATTTTAAGTCTCTTTCCGATTCCTTTTACTTACGTATTGATTACTAGTTTCCGCTACTTGAATTTATCACATGCGTTTTTACGTTTTTTCTGACTGAAATTGTTACAACAGTTTGAAATGATTCGTACTTCGATTGCTAATGAGTTGAATAATAGTTCATATATTGTTTGGATTTGAAGTCTGTTTGGTATTTGTGCGGTTATGGCGTTTTTTTTTTCTTTTTTGCCTTTAGTATATCCTTCAGAGTTTTGATTATCAACGAAATGAAGACTTATATATGTGTGTGTAATTTGCAGAATCGGGATGTCCAGGCATTGCTTCCATTAACAGTGAAACAGATAAACGACGCATTTCTGTCCAGTGATGATAAATCAAATTTTGTTATTGATGGTGTTGATGTTAACAATGTTAGTCTTGGACTTGTATGTTTTGTTTATTTTATGTATTGAGCTGCTTGTTGAGCTGCATTATGTTCAGGTTAAGCTTGTAGGGATGGTGCGTAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACTGGACGGATTGACTGTAGCAAATGGTTTGTTCTTCCCCCCACCACCGCACCCACACCTACACCTCTACAAGATGAGAAAAGTTAAGATTTGTTTCTTGTTGATATTGTTTTTTTTTTTTTTTTTTTTCTCTTTTGTGAAATGTGTCTATAGGGTCAATGAAGCTGCGGATTCAAATGAAGTTGAGGGCATATTGTAATGTTCTTTCTACTCTATCTTTAATAACTTTTAAAATATTCCTTGAGGATCGTAATACTTCTGTTGCTGTTATAATATAAAATGTTCATGATTGATTTTTCAACGTTGCCTACTAGAATCTCTTGTGAATTAAGATAGAACTTATGGAACACACCATGCTGTAGACGTGGAGTTATACTGTTCTGTAGTTTGAGAAAAATGAACTATATATCTGCAGCCATTGCTACTACAGGGCATACAAATGTCTCTTTTTTATCTCATCCTTATTGAAGTAGCAAGTATTAATGGAAAGTAGATCCTGCTTGATACCGAGAAGATGGTCGGTTGGTTTTTGTTGGGTAGAAAGGAAGCCAAGACAGGGAGTTGCAGAATTTTGTGGTCGGTAATCGCTAAGGAGGAGAGATCCCAGCTCTCTTGATAGCTGAAAACTTATTACTGTTTTTCTATTCAGTTTTTTTTTCCTGAATTTGAACTTTGTTGGAAGTTTATCAATATAAAAAGTGTGGTTCTTGCATATGTTCTGGTTTGAATGCTGTTTCTTGAAAATAACAGAGGTCTCCATCAACTTGCAATTATCATTCATTGAGATGTTACTTGTGGCTCTTCTGGATTAGTTTCCCTGTTTTACCTGAAATTAAATCTCTTAAACGATCATTTGGGGGACGACTCTGTTTATTTGGACTAATGATGCATTTAATCATCTTTCAGATTTATCCCCTTTCAGCTCATTTAAACATTTTCATGCTTCAGGGATGGCATGTATGTCCGGGTCCATGGCCACTTAAAGAGCTTCCAGGGTAAAAGAACTTTAAATGTCTTTTCTATCAGGTAGTGTATGGTTTTCCCTTAGTTCTTGGATTTCTTGCTTTTGTCATTTCTTAGGGATTTGAGTTGTGAGTGCATAAACTGTATGAATGCTGTTCTTGAACTATAGTGGACAATAGTTTATTTTATACTTTTAGCAATTGAATTGAGATGAGGTATTTCATGAGCAGTTTGTTCAACGAAATTAAATTGTTGCAGTGCTTGTTCTTTGCAACTTATGTGCATGATTTCTATACCATTGCGGCGTTGGGATTTTGATATGAAGTATTTGGCTTACAGGCCGGTGACGGACTATAATGAGATCACAAATCACTTCATCGAATCCATATATGTTCATTTTTACAACACCAGATTGCGGGTATTAATCAAGTCATTTCAAATTTTTAGTGATATCTTGATTAGGACTAAAGTAATATTGCTTGCCTTACCTGTTTGCTTTTGGGTTATTGTTTGTGCTGTACTGATAGAAACAACAAAGTAGTAGTATGACTACTCAGCCACAGATGACAAATCTATCTAATACGCCCGTGAAAGGATATCAAGCTCCCATTGCAAATCAAGTAAGATCCTTATTCAATTCACGTGTGCTGGGCTACGGTTTACTTATGCAACCTTCTAATGAGCTGTTTTCAGTACACTGGTCAAGCAGGCGGTGATAGTTGGAAGAGCCTTGAGCAGATGGTCTTAGATTTTCTGCAACTTCCTTCATGCGAGTAAGTGCCTTCTTAACAACGATGCAATTCTTTTCATTTCATCCTCCCTATTTTCATTTTCGTGCTTGTTAGTCTTGAATTTGCAATCTGGATGCATAGTTAAGAAAATAGATGGTTTCTAAGTTGTTTTCTTTCCTCATACATGTATATCTTTTTGGTTTTGAAGGCCGATGAATGTTTTTTTTTTCTCGTCCCTTTTTCTCTCTTTCATGAATAGATGACTAACTTCTTTGAGACTCGGCCCCCATAGCTTGGTGAATTGTTTATTATACTTGTTAGGATTCTTAAATGACCCAAGCACCACCAGGAAAAGGTTTTTCCTAGATGAGAATTATTCGGAAGAGCTGTAGTCCTAATCTAACAAATTGGTCTTTCCTTTTTCTGGAGTAGAGGAGCAGTATATCTACTTAAGTATAGAATTGTACAACATAAACGAAGCCTAGAACGCTTCTCTCACTGGTTTCTTTCCCTGCTCATCGATTTCTTAGTTTAGATTTATTATTACAGTCTCTATACATTTATTTTGTATGTAGTTCTGAAAGAGGCGCACACCGTGATGTCATTGCTCAACAGCTCAAAGTTCCACTAGAGAAGCTCATGTATTACTCTCTCCTTCTCACAGTAAAACTTATCTTGCAAGTAAGGGTTGTAACTTAAAATTTACCATTTTTGTTATTGTTTTGCAGTCCGGCGATGAAAAATCTAGAAGAGGAAGGCCTAATCTACTCAACAACCGATGATTACCACTTCAAATCAACCGCCAACGGTTGACGTTTCTATTATGGTAACTAACGAATTGAAGTGAAGTTTTTTTCAGTGCCGTTGTTTCGCTTCATCTATAGTTTAAGTTGGGTAAATCACTGTGGTCAAAATATGATGCTGAAACGTCTGTTTTAGCCTCTATAACAGCGATCCAAAATCCCACATGGCTATGCCTTGTTTATAGTTGATGCTATTATTGTGATGTTTGTTTGTATTTTCAACATATGTGAAGTGTGCTAATACGCCACAGGGTGCCAGCAGCCTGGAGAGGTGGATTTGGCCGACTCCAGGACTTTTTTCCAATCCGCAAACAGTAACTTTTTCCCTTGCGAAATTAGAGGATAGAACACTGTTCATTTTTACCTGCGTTGCTAACTAACTCAAAACTTTTAAACCAATAGGACAATAATGGCAAATAATATATTTAGGAAATAAACTAAGAATATAGCACAAGAATTAAATATTTGTAAAATTAGCAAATGTTGGTTAGTCGATTGATAATTTTTTTAAAATGTCAAGTTTA

mRNA sequence

GGATGGTGAAGTGGTGGGATATCTAGGGTTTCATTATTCTTCACTCCTACCTTTACAGGGGAAGAACGATGTATGCAAGTCAATTCGACGGCAACGCTGCCTTCTCCGGTGGTGGATTTATGCCATCTCAGACCACCCAGGCCCCTGATCACTCATTCTCTCCGGCCAAAAATCGGGATGTCCAGGCATTGCTTCCATTAACAGTGAAACAGATAAACGACGCATTTCTGTCCAGTGATGATAAATCAAATTTTGTTATTGATGGTGTTGATGTTAACAATGTTAAGCTTGTAGGGATGGTGCGTAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACTGGACGGATTGACTGTAGCAAATGGGTCAATGAAGCTGCGGATTCAAATGAAGTTGAGGGCATATTGGATGGCATGTATGTCCGGGTCCATGGCCACTTAAAGAGCTTCCAGGGTAAAAGAACTTTAAATGTCTTTTCTATCAGGCCGGTGACGGACTATAATGAGATCACAAATCACTTCATCGAATCCATATATGTTCATTTTTACAACACCAGATTGCGGAAACAACAAAGTAGTAGTATGACTACTCAGCCACAGATGACAAATCTATCTAATACGCCCGTGAAAGGATATCAAGCTCCCATTGCAAATCAATACACTGGTCAAGCAGGCGGTGATAGTTGGAAGAGCCTTGAGCAGATGGTCTTAGATTTTCTGCAACTTCCTTCATGCGATTCTGAAAGAGGCGCACACCGTGATGTCATTGCTCAACAGCTCAAAGTTCCACTAGAGAAGCTCATTCCGGCGATGAAAAATCTAGAAGAGGAAGGCCTAATCTACTCAACAACCGATGATTACCACTTCAAATCAACCGCCAACGGTTGACGTTTCTATTATGGGTGCCAGCAGCCTGGAGAGGTGGATTTGGCCGACTCCAGGACTTTTTTCCAATCCGCAAACAGTAACTTTTTCCCTTGCGAAATTAGAGGATAGAACACTGTTCATTTTTACCTGCGTTGCTAACTAACTCAAAACTTTTAAACCAATAGGACAATAATGGCAAATAATATATTTAGGAAATAAACTAAGAATATAGCACAAGAATTAAATATTTGTAAAATTAGCAAATGTTGGTTAGTCGATTGATAATTTTTTTAAAATGTCAAGTTTA

Coding sequence (CDS)

ATGTATGCAAGTCAATTCGACGGCAACGCTGCCTTCTCCGGTGGTGGATTTATGCCATCTCAGACCACCCAGGCCCCTGATCACTCATTCTCTCCGGCCAAAAATCGGGATGTCCAGGCATTGCTTCCATTAACAGTGAAACAGATAAACGACGCATTTCTGTCCAGTGATGATAAATCAAATTTTGTTATTGATGGTGTTGATGTTAACAATGTTAAGCTTGTAGGGATGGTGCGTAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACTGGACGGATTGACTGTAGCAAATGGGTCAATGAAGCTGCGGATTCAAATGAAGTTGAGGGCATATTGGATGGCATGTATGTCCGGGTCCATGGCCACTTAAAGAGCTTCCAGGGTAAAAGAACTTTAAATGTCTTTTCTATCAGGCCGGTGACGGACTATAATGAGATCACAAATCACTTCATCGAATCCATATATGTTCATTTTTACAACACCAGATTGCGGAAACAACAAAGTAGTAGTATGACTACTCAGCCACAGATGACAAATCTATCTAATACGCCCGTGAAAGGATATCAAGCTCCCATTGCAAATCAATACACTGGTCAAGCAGGCGGTGATAGTTGGAAGAGCCTTGAGCAGATGGTCTTAGATTTTCTGCAACTTCCTTCATGCGATTCTGAAAGAGGCGCACACCGTGATGTCATTGCTCAACAGCTCAAAGTTCCACTAGAGAAGCTCATTCCGGCGATGAAAAATCTAGAAGAGGAAGGCCTAATCTACTCAACAACCGATGATTACCACTTCAAATCAACCGCCAACGGTTGA

Protein sequence

MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQPQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG

Homology

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BLAST of IVF0004197 vs. ExPASy Swiss-Prot
Match: Q8LFJ8 (Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.6e-70
Identity = 141/280 (50.36%), Postives = 187/280 (66.79%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY   FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S+  +S
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSA--STTGES 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NF IDGVD+  V +VG +     RIT V F +DDGTG +DC +W +   ++ E+E +  G
Sbjct: 61  NFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLR--KQQSSSMT 180
           MYVR+HGHLK FQGKR++NVFS+RPVTD+NEI +HF E +YVH YNT+LR       + T
Sbjct: 121 MYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTAT 180

Query: 181 TQPQMT-NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLP-SCDSERGAHRD 240
            +PQM  +   TP K YQ   +NQ+  Q   DS   ++Q VL++L  P    SE G H D
Sbjct: 181 PRPQMPYSTMPTPAKPYQTGPSNQFPNQF-NDSMHGVKQTVLNYLNQPMHIVSEAGVHCD 240

Query: 241 VIAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 277
           +IA++L++PL ++  A++ L  +G IYST D+  FKSTAN
Sbjct: 241 IIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTAN 277

[Close]

BLAST of IVF0004197 vs. ExPASy Swiss-Prot
Match: Q9ZQ19 (Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A PE=1 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 3.4e-67
Identity = 133/274 (48.54%), Postives = 187/274 (68.25%), Query Frame = 0


Query: 3   ASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNF 62
           +SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F SS +KS  
Sbjct: 4   SSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSGL 63

Query: 63  VIDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGM 122
           VI+G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + DG 
Sbjct: 64  VINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGT 123

Query: 123 YVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQP 182
           YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T   
Sbjct: 124 YVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSV 183

Query: 183 QMT--NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDS-ERGAHRDVI 242
             T    SNT       P+ +       G+  K+L+ M+LD+L+ P+C + ++G H D I
Sbjct: 184 NTTFQGGSNTNQATLLNPVVSSQNND--GNGRKNLDDMILDYLKQPACTARQQGIHIDEI 243

Query: 243 AQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFK 273
           AQQLK+P  KL   +++LE +GLIYST D+YHFK
Sbjct: 244 AQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of IVF0004197 vs. ExPASy Swiss-Prot
Match: Q6H7J5 (Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2B PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-50
Identity = 107/280 (38.21%), Postives = 176/280 (62.86%), Query Frame = 0


Query: 8   GNAA--FSGGGFMPSQTTQAPDHSFSPA----KNRDVQALLPLTVKQINDAFLSSDDKSN 67
           GNA+  F GGGFMPSQ T A + +        K+R+ QALLPLTVKQI DA  ++DDKSN
Sbjct: 19  GNASSLFGGGGFMPSQATNAAEGTSGGGGGFPKSRNAQALLPLTVKQIMDASQTNDDKSN 78

Query: 68  FVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGM 127
           F ++G++V+ V+LVG + N+  R+TDV+F LDDGTGR+  ++W N++ D+ E+  I +G 
Sbjct: 79  FAVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKEMADIQNGD 138

Query: 128 YVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQP 187
           YV V+G LK FQGKR +  +S+R +T++N++T+HF+  ++VH   TR + Q +++  T  
Sbjct: 139 YVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATGT 198

Query: 188 QMTNLSNTPVKGYQAPIANQ---YTGQAGGDSWKSLEQMVLDFLQLPS-CDSERGAHRDV 247
               +    +   Q+P+ NQ   ++      +  ++  +VL+    P+  + + G   D 
Sbjct: 199 PNQTMPRDSMAYNQSPLTNQASTFSAPQNTGTGTNMIDLVLNVFHDPAVMNDDHGVGVDY 258

Query: 248 IAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           ++++L +P E +   + +  + G +Y+T DD+H+KST NG
Sbjct: 259 VSRRLNLPEETVGKIIIDQVDLGHLYATIDDHHYKSTMNG 298

[Close]

BLAST of IVF0004197 vs. ExPASy Swiss-Prot
Match: Q6K9U2 (Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2A PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.9e-44
Identity = 111/279 (39.78%), Postives = 160/279 (57.35%), Query Frame = 0


Query: 11  AFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDA---FLSSDDKSNFVIDGV 70
           AFS   F  SQ   A   S +P+K+R   + +PLTVKQI++A    ++ +  + FV+DGV
Sbjct: 9   AFSPSQFTSSQNAAA--DSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAPFVVDGV 68

Query: 71  DVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHG 130
           +  NV+LVG+V  +  R TDV+F +DDGTGR+D  +WVN+ ADS E   + +GMYV V G
Sbjct: 69  ETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGMYVSVIG 128

Query: 131 HLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLR---------KQQSSSMT 190
            LK  Q ++    F+IRPVTDYNE+T HFI+ + +H  NT+ +            SSS  
Sbjct: 129 SLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAMGSSSSN 188

Query: 191 TQPQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLP-SCDSERGAHRDV 250
              +MT  + T VK   AP+ +   G     S   L   VL+  + P + +SE G H D 
Sbjct: 189 GFSEMT--TPTSVKSNPAPVLSVTNG-----SKTDLNTEVLNVFREPANVESEHGVHIDE 248

Query: 251 IAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 277
           I ++ ++P  K+  A+  L + G IYST D+ H+KS  N
Sbjct: 249 IVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFN 278

[Close]

BLAST of IVF0004197 vs. ExPASy Swiss-Prot
Match: Q92373 (Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssb2 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.9e-24
Identity = 91/286 (31.82%), Postives = 138/286 (48.25%), Query Frame = 0


Query: 7   DGNAAFS-----GGGFMPSQTTQAPDHSFSPAKNRDVQA---LLPLTVKQINDAFLSSDD 66
           D N+AFS     G GF         D S  P+ +R   A   L P+T+KQI +A     D
Sbjct: 14  DFNSAFSPGMGGGAGF------NEYDQSSQPSVDRQQGAGNKLRPVTIKQILNASQVHAD 73

Query: 67  KSNFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGIL 126
            + F IDGV+V  V  VG++RN   + T+ T+ ++DGTG I+   W +  A S     + 
Sbjct: 74  -AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALSE----LA 133

Query: 127 DGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMT 186
              YVRV+G++K F GK  +    IR + D+NE+  HF+E+I VH +            T
Sbjct: 134 TDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLH-----------FT 193

Query: 187 TQPQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLP-----------SC 246
            +    N +N P  GY    A  Y   +   +  SLEQ + ++   P           + 
Sbjct: 194 QKANAVNGANAP--GYGTSNALGYNNISSNGAANSLEQKLAEYSLTPAQMTVMQAIHSAP 253

Query: 247 DSERGAHRDVIAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKS 274
           ++  G H   +AQ +   ++ L      L++EG+IY+T D+ HFKS
Sbjct: 254 ETNEGVHVRQLAQSVGPGID-LTAVTDFLQQEGIIYTTIDENHFKS 274

[Close]

BLAST of IVF0004197 vs. ExPASy TrEMBL
Match: A0A1S4DZE3 (replication protein A 32 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103494262 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. ExPASy TrEMBL
Match: A0A5D3CIS3 (Replication protein A 32 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00360 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. ExPASy TrEMBL
Match: A0A6J1JJ51 (replication protein A 32 kDa subunit B OS=Cucurbita maxima OX=3661 GN=LOC111485578 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.4e-148
Identity = 261/277 (94.22%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTPV+GYQ P++NQYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPVRGYQTPMSNQYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
            LKVPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLKVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. ExPASy TrEMBL
Match: A0A6J1E347 (replication protein A 32 kDa subunit B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430133 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.2e-147
Identity = 260/277 (93.86%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG+IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGQIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTPV+GYQ PI+NQYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPVRGYQTPISNQYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
            L VPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. ExPASy TrEMBL
Match: A0A6J1E235 (replication protein A 32 kDa subunit B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430133 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.1e-145
Identity = 259/277 (93.50%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG+IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGQIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLR QQSSSMT Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR-QQSSSMTPQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTPV+GYQ PI+NQYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPVRGYQTPISNQYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
            L VPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of IVF0004197 vs. NCBI nr
Match: XP_008453602.1 (PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_008453603.1 PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_016901361.1 PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >KAA0058271.1 replication protein A 32 kDa subunit B-like [Cucumis melo var. makuwa] >TYK11823.1 replication protein A 32 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 559 bits (1440), Expect = 7.45e-201
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277
           QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. NCBI nr
Match: XP_011656845.1 (replication protein A 32 kDa subunit B [Cucumis sativus] >KAE8653166.1 hypothetical protein Csa_019848 [Cucumis sativus])

HSP 1 Score: 553 bits (1424), Expect = 2.05e-198
Identity = 274/277 (98.92%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQMTNLSNTP+K YQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ
Sbjct: 181 PQMTNLSNTPMKVYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277
           QLKVPLEKLIPAMKNLEEEGLIYSTTDD+HFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDFHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. NCBI nr
Match: XP_038880298.1 (replication protein A 32 kDa subunit B [Benincasa hispida])

HSP 1 Score: 536 bits (1380), Expect = 1.01e-191
Identity = 266/277 (96.03%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGWIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQ SS+T Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQGSSIT-Q 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTP+KGYQAP++NQYTGQAGGD WKSLEQMVLDFLQLPSCDSERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPMKGYQAPMSNQYTGQAGGDGWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277
           QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of IVF0004197 vs. NCBI nr
Match: XP_022988280.1 (replication protein A 32 kDa subunit B [Cucurbita maxima])

HSP 1 Score: 535 bits (1377), Expect = 3.00e-191
Identity = 261/277 (94.22%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTPV+GYQ P++NQYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPVRGYQTPMSNQYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277
            LKVPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLKVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. NCBI nr
Match: XP_023516911.1 (replication protein A 32 kDa subunit B-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516912.1 replication protein A 32 kDa subunit B-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 534 bits (1376), Expect = 4.26e-191
Identity = 261/277 (94.22%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180
           MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT Q
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQ 180

Query: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240
           PQM NLSNTPV+GYQ PI+NQY+GQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 PQMANLSNTPVRGYQTPISNQYSGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277
            LKVPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLKVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of IVF0004197 vs. TAIR 10
Match: AT3G02920.1 (Replication protein A, subunit RPA32 )

HSP 1 Score: 265.8 bits (678), Expect = 4.0e-71
Identity = 141/280 (50.36%), Postives = 187/280 (66.79%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60
           MY   FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S+  +S
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSA--STTGES 60

Query: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120
           NF IDGVD+  V +VG +     RIT V F +DDGTG +DC +W +   ++ E+E +  G
Sbjct: 61  NFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLG 120

Query: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLR--KQQSSSMT 180
           MYVR+HGHLK FQGKR++NVFS+RPVTD+NEI +HF E +YVH YNT+LR       + T
Sbjct: 121 MYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTAT 180

Query: 181 TQPQMT-NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLP-SCDSERGAHRD 240
            +PQM  +   TP K YQ   +NQ+  Q   DS   ++Q VL++L  P    SE G H D
Sbjct: 181 PRPQMPYSTMPTPAKPYQTGPSNQFPNQF-NDSMHGVKQTVLNYLNQPMHIVSEAGVHCD 240

Query: 241 VIAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 277
           +IA++L++PL ++  A++ L  +G IYST D+  FKSTAN
Sbjct: 241 IIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTAN 277

[Close]

BLAST of IVF0004197 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-68
Identity = 133/274 (48.54%), Postives = 187/274 (68.25%), Query Frame = 0


Query: 3   ASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNF 62
           +SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F SS +KS  
Sbjct: 4   SSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSGL 63

Query: 63  VIDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGM 122
           VI+G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + DG 
Sbjct: 64  VINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGT 123

Query: 123 YVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQP 182
           YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T   
Sbjct: 124 YVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSV 183

Query: 183 QMT--NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDS-ERGAHRDVI 242
             T    SNT       P+ +       G+  K+L+ M+LD+L+ P+C + ++G H D I
Sbjct: 184 NTTFQGGSNTNQATLLNPVVSSQNND--GNGRKNLDDMILDYLKQPACTARQQGIHIDEI 243

Query: 243 AQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFK 273
           AQQLK+P  KL   +++LE +GLIYST D+YHFK
Sbjct: 244 AQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of IVF0004197 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-68
Identity = 133/274 (48.54%), Postives = 187/274 (68.25%), Query Frame = 0


Query: 3   ASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNF 62
           +SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F SS +KS  
Sbjct: 4   SSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSGL 63

Query: 63  VIDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGM 122
           VI+G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + DG 
Sbjct: 64  VINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGT 123

Query: 123 YVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQP 182
           YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T   
Sbjct: 124 YVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSV 183

Query: 183 QMT--NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSCDS-ERGAHRDVI 242
             T    SNT       P+ +       G+  K+L+ M+LD+L+ P+C + ++G H D I
Sbjct: 184 NTTFQGGSNTNQATLLNPVVSSQNND--GNGRKNLDDMILDYLKQPACTARQQGIHIDEI 243

Query: 243 AQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFK 273
           AQQLK+P  KL   +++LE +GLIYST D+YHFK
Sbjct: 244 AQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of IVF0004197 vs. TAIR 10
Match: AT3G02920.2 (Replication protein A, subunit RPA32 )

HSP 1 Score: 255.0 bits (650), Expect = 7.0e-68
Identity = 143/300 (47.67%), Postives = 191/300 (63.67%), Query Frame = 0


Query: 1   MYASQFDGNAAFSGGGFMPSQ-TTQAPDHSF-------------------SPAKNRDVQA 60
           MY   FDGNAAF+GGGFMPSQ TTQA + S                    S  +NRDV+ 
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKVYVSDSRRFSGISAAKSSIRNRDVRT 60

Query: 61  LLPLTVKQINDAFLSSDDKSNFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID 120
           LLPLT+KQ++ A  S+  +SNF IDGVD+  V +VG +     RIT V F +DDGTG +D
Sbjct: 61  LLPLTLKQLSSA--STTGESNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVD 120

Query: 121 CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESI 180
           C +W +   ++ E+E +  GMYVR+HGHLK FQGKR++NVFS+RPVTD+NEI +HF E +
Sbjct: 121 CVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECM 180

Query: 181 YVHFYNTRLR--KQQSSSMTTQPQMT-NLSNTPVKGYQAPIANQYTGQAGGDSWKSLEQM 240
           YVH YNT+LR       + T +PQM  +   TP K YQ   +NQ+  Q   DS   ++Q 
Sbjct: 181 YVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQTGPSNQFPNQF-NDSMHGVKQT 240

Query: 241 VLDFLQLP-SCDSERGAHRDVIAQQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 277
           VL++L  P    SE G H D+IA++L++PL ++  A++ L  +G IYST D+  FKSTAN
Sbjct: 241 VLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTAN 297

The following BLAST results are available for this feature:

BLAST of IVF0004197 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFJ8	5.6e-70	50.36	Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B ...	[more]
Q9ZQ19	3.4e-67	48.54	Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A ...	[more]
Q6H7J5	1.7e-50	38.21	Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6K9U2	6.9e-44	39.78	Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q92373	7.9e-24	31.82	Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of IVF0004197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZE3	1.2e-155	100.00	replication protein A 32 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103494...	[more]
A0A5D3CIS3	1.2e-155	100.00	Replication protein A 32 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1JJ51	2.4e-148	94.22	replication protein A 32 kDa subunit B OS=Cucurbita maxima OX=3661 GN=LOC1114855...	[more]
A0A6J1E347	1.2e-147	93.86	replication protein A 32 kDa subunit B-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1E235	1.1e-145	93.50	replication protein A 32 kDa subunit B-like isoform X2 OS=Cucurbita moschata OX=...	[more]

BLAST of IVF0004197 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453602.1	7.45e-201	100.00	PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_008453...	[more]
XP_011656845.1	2.05e-198	98.92	replication protein A 32 kDa subunit B [Cucumis sativus] >KAE8653166.1 hypotheti...	[more]
XP_038880298.1	1.01e-191	96.03	replication protein A 32 kDa subunit B [Benincasa hispida]	[more]
XP_022988280.1	3.00e-191	94.22	replication protein A 32 kDa subunit B [Cucurbita maxima]	[more]
XP_023516911.1	4.26e-191	94.22	replication protein A 32 kDa subunit B-like isoform X1 [Cucurbita pepo subsp. pe...	[more]

BLAST of IVF0004197 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02920.1	4.0e-71	50.36	Replication protein A, subunit RPA32	[more]
AT2G24490.1	2.4e-68	48.54	replicon protein A2	[more]
AT2G24490.2	2.4e-68	48.54	replicon protein A2	[more]
AT3G02920.2	7.0e-68	47.67	Replication protein A, subunit RPA32	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 33..168 e-value: 3.1E-41 score: 141.9
None	No IPR available	PANTHER	PTHR13989:SF42	REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE	coord: 5..277
None	No IPR available	CDD	cd04478	RPA2_DBD_D	coord: 71..164 e-value: 1.05289E-40 score: 134.264
IPR014892	Replication protein A, C-terminal	PFAM	PF08784	RPA_C	coord: 163..268 e-value: 9.1E-16 score: 58.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 208..276 e-value: 7.3E-17 score: 62.8
IPR014646	Replication factor A protein 2	PIRSF	PIRSF036949	RPA32	coord: 1..275 e-value: 1.7E-77 score: 258.1
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 72..145 e-value: 8.3E-9 score: 35.3
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 5..277
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 41..168
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 210..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004197.1	IVF0004197.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding