IVF0004087 (gene) Melon (IVF77) v1

Overview
NameIVF0004087
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionmitochondrial zinc maintenance protein 1, mitochondrial
Locationchr07: 24035596 .. 24037415 (-)
RNA-Seq ExpressionIVF0004087
SyntenyIVF0004087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGAACGAAACGACGTCGTGACCTTTTGGGAGCTTCATTGTTCGTGAGGAAGCGCAGAAACCCATTTCAAGAGGGATCTCATCATGAAAGGGGAAGTTCTAAGCGCCTACAGATCGTTGCTCAGGGCAACCAAAAAGTCCTTCGCCGGCGACACCTTGATGCTGACCGAGTCGGCCTCCGAGATACGCCGGAAGTTTCAAGAGAGCCGCCACGTGACCTCCGAGGCTGAGATTCGGAAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAGCGTACTTCTCGCGGCGGCTATGGTATTCTTCTTTTCTATTTTGAGATTCATTTTCAGTGTTTTTAACCACTAATCTAACAATTGGCCAATCGGATATTGAATTTGAAATGAACGCATGGCAGCCTACATGTTTGATAAAATGCTTCACCCAAAATTTTCCGCTTTTTATTTACTGAAAGCTAGTGGGTTCGTAGGAAAACGCTGAAACTATTGATTACTCTTCTGGAGTTACTTGGTTTTTAATTCTACTTGGCCGGTGTTTATGAAGACTTAGATTGAGAATGCGTGAACTGTATCGTAGAACAGATTATAGAAACACGAGTTTGTGCGATCTAGATTTTTGTTTACTTAACTTGGATAGCAGTGTTCCTTTTCCTTTCTTGAGTTCAATAAAGAGTGAGGATTCAAACATCATACGTCCAAAGGAGATTATCAATGCCTTAACCTATTGATACATTCTCAAGTTGGATGGGGTGTTTACAGTAAACTCACAAATTGGGATAAAATAAACCCGTATTTGAAACAGAAGTTTGTGTTCTTAACTTTGAATTATACAAACCCATCCTAGGAATCAAATACCTTTCAAGCTTCTAACTTTAGAACTCAAGGACACCGTTATACAACCTACAGAACAGATGAAGGTCAACCTTTTAAGGTTCTAACTTAACGTGCCAAACTTCCTAAAATTTTTCTTTCTCGATCCTTGTAAATAAAATCTAAGAGCCAAACATTAATTTTGGTTATTGCTGCAGAAATGAAACCGAGTAAAGATCATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTACGCAAATCTAAATGAGGAGGTGAGATGATGGATGCTGACTTCCAATTTGACAATTGTTTTAACTTTCAGCTATTTGCTCTTGCCCTAGGAGGATCTTGGAAAAAATTTCTGTTTCCTTTTGTTGGTCCATTTCATATCCATATTTATTTGTGCTCAGTTAAATGTACTTGGTTGGTATGGTTCTTGCAGGGCTAATGAAAGTCCCAATCTTATACCTTTTATTCCAATTTGATGGATCGAGAAAGTTGGACTCAAAAGTCAAATTTTGGCTTACAACTTTTTTTAGTGAATGAAATTTTCTAGAATGATTTTTTCAAGAAGCCTGGCGTTATTAGTAAGAGAAACAATCATCTTTACTGGGATGGATGATTGAACCTTCAACCTTTAGAAAGGAAGGTTATTTTTAATTATTGTTGTCACCTTGGGTTTCAAGTCATTTCCATTAAGTTCACCTTCTATGATATAGGAACCAAACGTTTGTATTTGGAGTCTACTTAATGTTGGGGAAAATGGCCAACCAAGCCCATTGAGTGCTCTACCTTGGACAATCAACACATATCCTCAAGCTAAAATATATGTGATATTGGTTACCCTTCTGTTTGTTTTGGAAAATGTGTGGTAGAATAAACTTCTTTTCTACCTTTCATTTTTACATTAATTTTGACATGAAATGTTGGCTATAGTATTTAGCAAGTTAGAATAGGGG

mRNA sequence

CTTGAACGAAACGACGTCGTGACCTTTTGGGAGCTTCATTGTTCGTGAGGAAGCGCAGAAACCCATTTCAAGAGGGATCTCATCATGAAAGGGGAAGTTCTAAGCGCCTACAGATCGTTGCTCAGGGCAACCAAAAAGTCCTTCGCCGGCGACACCTTGATGCTGACCGAGTCGGCCTCCGAGATACGCCGGAAGTTTCAAGAGAGCCGCCACGTGACCTCCGAGGCTGAGATTCGGAAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAGCGTACTTCTCGCGGCGGCTATGAAATGAAACCGAGTAAAGATCATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTACGCAAATCTAAATGAGGAGGGCTAATGAAAGTCCCAATCTTATACCTTTTATTCCAATTTGATGGATCGAGAAAGTTGGACTCAAAAGTCAAATTTTGGCTTACAACTTTTTTTAGTGAATGAAATTTTCTAGAATGATTTTTTCAAGAAGCCTGGCGTTATTAGTAAGAGAAACAATCATCTTTACTGGGATGGATGATTGAACCTTCAACCTTTAGAAAGGAAGGTTATTTTTAATTATTGTTGTCACCTTGGGTTTCAAGTCATTTCCATTAAGTTCACCTTCTATGATATAGGAACCAAACGTTTGTATTTGGAGTCTACTTAATGTTGGGGAAAATGGCCAACCAAGCCCATTGAGTGCTCTACCTTGGACAATCAACACATATCCTCAAGCTAAAATATATGTGATATTGGTTACCCTTCTGTTTGTTTTGGAAAATGTGTGGTAGAATAAACTTCTTTTCTACCTTTCATTTTTACATTAATTTTGACATGAAATGTTGGCTATAGTATTTAGCAAGTTAGAATAGGGG

Coding sequence (CDS)

ATGAAAGGGGAAGTTCTAAGCGCCTACAGATCGTTGCTCAGGGCAACCAAAAAGTCCTTCGCCGGCGACACCTTGATGCTGACCGAGTCGGCCTCCGAGATACGCCGGAAGTTTCAAGAGAGCCGCCACGTGACCTCCGAGGCTGAGATTCGGAAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAGCGTACTTCTCGCGGCGGCTATGAAATGAAACCGAGTAAAGATCATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTACGCAAATCTAAATGA

Protein sequence

MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREASHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK
Homology
BLAST of IVF0004087 vs. ExPASy Swiss-Prot
Match: C4Y4R9 (Mitochondrial zinc maintenance protein 1, mitochondrial OS=Clavispora lusitaniae (strain ATCC 42720) OX=306902 GN=MZM1 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-04
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           M    L AYR+ LRAT+ +F GD  +L  + ++IR     +R +  + E+ K + E  E 
Sbjct: 1   MSNPALQAYRTALRATRVAFNGDNFVLKSARAKIREGLLSNRDLADKMEVEKKVAELNEV 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 105
           + F+   IVQ ++    G +    K H     E+ S E +++SK
Sbjct: 61  AQFLVKNIVQGEKEE--GKDRYLLKIH--DKTELGSNETIKQSK 100

BLAST of IVF0004087 vs. ExPASy TrEMBL
Match: A0A1S3BYH1 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494771 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 105
           SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104

BLAST of IVF0004087 vs. ExPASy TrEMBL
Match: A0A0A0KY80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.5e-44
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           MKGEVLSAYRSLLRATK+SFAGDTLMLTESASEIRRKFQESRHVTSE EIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 105
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVP+EELLRKSK
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKSK 104

BLAST of IVF0004087 vs. ExPASy TrEMBL
Match: A0A6J1DPV6 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111022436 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           M+GEVLSAYR+LLRAT KSFAGDTLMLTESA+E+RRKF+ESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

BLAST of IVF0004087 vs. ExPASy TrEMBL
Match: A0A6J1GAU2 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452487 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 93/104 (89.42%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           +KGEVLSAYR+LLRATKKSFAGDTLML ESA+E+RRKF+ESRHVTS+ EIRKLLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 105
           SHFISNMIVQAK TSRGGYEMKPSK+HAGATLEVPSEELLR+SK
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRSK 105

BLAST of IVF0004087 vs. ExPASy TrEMBL
Match: A0A6J1KH11 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493140 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 92/104 (88.46%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           +KGEVLSAYR+LLRATKKSFAGDTLML ESA+E+RRKF+ESRHVTS+ EIRKLLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 105
           SHFISNMIVQAK TSRGGYEMK SK+HAGATLEVPSEELLR+SK
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKASKEHAGATLEVPSEELLRRSK 105

BLAST of IVF0004087 vs. NCBI nr
Match: XP_008454342.1 (PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo])

HSP 1 Score: 194 bits (492), Expect = 5.32e-62
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104
           SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104

BLAST of IVF0004087 vs. NCBI nr
Match: XP_038905396.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 187 bits (474), Expect = 2.96e-59
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           MKGEVLSAYR+LLRATKKSFAGDTLMLTESASE+RRKF+ESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRALLRATKKSFAGDTLMLTESASEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

BLAST of IVF0004087 vs. NCBI nr
Match: XP_004152250.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52811.1 hypothetical protein Csa_014848 [Cucumis sativus])

HSP 1 Score: 187 bits (474), Expect = 2.96e-59
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           MKGEVLSAYRSLLRATK+SFAGDTLMLTESASEIRRKFQESRHVTSE EIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVP+EELLRKSK
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKSK 104

BLAST of IVF0004087 vs. NCBI nr
Match: XP_022155304.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia])

HSP 1 Score: 182 bits (462), Expect = 2.00e-57
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           M+GEVLSAYR+LLRAT KSFAGDTLMLTESA+E+RRKF+ESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

BLAST of IVF0004087 vs. NCBI nr
Match: XP_022949021.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP_023524456.1 mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177 bits (450), Expect = 1.40e-55
Identity = 93/104 (89.42%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
           +KGEVLSAYR+LLRATKKSFAGDTLML ESA+E+RRKF+ESRHVTS+ EIRKLLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104
           SHFISNMIVQAK TSRGGYEMKPSK+HAGATLEVPSEELLR+SK
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRSK 105

BLAST of IVF0004087 vs. TAIR 10
Match: AT3G62810.1 (complex 1 family protein / LVR family protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-32
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 0

Query: 3   GEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREASH 62
           GE L AYR+LLRATKKSFAGDT ML  SASEIR+KF+E+R V S ++I +LLEEAREA+ 
Sbjct: 4   GEALIAYRALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEAREATQ 63

Query: 63  FISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRK 103
           FIS MIVQAK   RGGYEMK S++HAGATLE+PSEE+LRK
Sbjct: 64  FISTMIVQAKLNERGGYEMKASQEHAGATLELPSEEMLRK 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
C4Y4R95.8e-0430.77Mitochondrial zinc maintenance protein 1, mitochondrial OS=Clavispora lusitaniae... [more]
Match NameE-valueIdentityDescription
A0A1S3BYH12.9e-46100.00mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 ... [more]
A0A0A0KY803.5e-4496.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1[more]
A0A6J1DPV61.1e-4293.20mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia O... [more]
A0A6J1GAU22.1e-4189.42mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX... [more]
A0A6J1KH111.8e-4088.46mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3... [more]
Match NameE-valueIdentityDescription
XP_008454342.15.32e-62100.00PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo... [more]
XP_038905396.12.96e-5996.12mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida][more]
XP_004152250.12.96e-5996.15mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52... [more]
XP_022155304.12.00e-5793.20mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia][more]
XP_022949021.11.40e-5589.42mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP... [more]
Match NameE-valueIdentityDescription
AT3G62810.11.0e-3273.00complex 1 family protein / LVR family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..60
e-value: 1.2E-12
score: 47.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..104
NoneNo IPR availablePANTHERPTHR46749COMPLEX III ASSEMBLY FACTOR LYRM7coord: 3..103
NoneNo IPR availableCDDcd20267Complex1_LYR_LYRM7coord: 5..76
e-value: 1.89182E-25
score: 88.7747

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004087.1IVF0004087.1mRNA