IVF0004062 (gene) Melon (IVF77) v1

Overview


Name	IVF0004062
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 16876804 .. 16877040 (+)
RNA-Seq Expression	IVF0004062
Synteny	IVF0004062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCAGACTAATTCAAATTGTCGGCAGCCTCCTTCAGCGCCATCAAAGCTTTTTGTCCCCTCCCCATCATGTGTTCCAGAGCACTTCGAAGTCTCCTCTGGCCAAGCTCCCATTAACTCTTCATCATTAGGTTCTTTATCCTCTTTTGCCCTCCACTCATCAGCTAGTTTGCAGAAAAGATTAAAACCAAAAAGTAAGAAATCTTCAAAGCTCTCCCCACATTGTCTCTAG

mRNA sequence

ATGCATGCTCAGACTAATTCAAATTGTCGGCAGCCTCCTTCAGCGCCATCAAAGCTTTTTGTCCCCTCCCCATCATGTGTTCCAGAGCACTTCGAAGTCTCCTCTGGCCAAGCTCCCATTAACTCTTCATCATTAGGTTCTTTATCCTCTTTTGCCCTCCACTCATCAGCTAGTTTGCAGAAAAGATTAAAACCAAAAAGTAAGAAATCTTCAAAGCTCTCCCCACATTGTCTCTAG

Coding sequence (CDS)

ATGCATGCTCAGACTAATTCAAATTGTCGGCAGCCTCCTTCAGCGCCATCAAAGCTTTTTGTCCCCTCCCCATCATGTGTTCCAGAGCACTTCGAAGTCTCCTCTGGCCAAGCTCCCATTAACTCTTCATCATTAGGTTCTTTATCCTCTTTTGCCCTCCACTCATCAGCTAGTTTGCAGAAAAGATTAAAACCAAAAAGTAAGAAATCTTCAAAGCTCTCCCCACATTGTCTCTAG

Protein sequence

MHAQTNSNCRQPPSAPSKLFVPSPSCVPEHFEVSSGQAPINSSSLGSLSSFALHSSASLQKRLKPKSKKSSKLSPHCL

Homology

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BLAST of IVF0004062 vs. NCBI nr
Match: TYK21239.1 (DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 9.83e-05
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 17 SKLFVPSPSCVPEHFEVSSGQAPINSSSLGSLSSFALHSSASLQKR 62
          ++L   SPS  P+ F+VSSGQAPINSSS GS SSFALHS   L KR
Sbjct: 2  TELSALSPSDAPKPFKVSSGQAPINSSSSGSFSSFALHSLVRLGKR 47

The following BLAST results are available for this feature:

BLAST of IVF0004062 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004062 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004062 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21239.1	9.83e-05	65.22	DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004062 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004062.1	IVF0004062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding