IVF0004001 (gene) Melon (IVF77) v1

Overview


Name	IVF0004001
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr08: 24123076 .. 24123318 (-)
RNA-Seq Expression	IVF0004001
Synteny	IVF0004001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGACCTTTCCAAGGCGATTTGATGTCCTCTAACCTCAATCGTCATTTTTGCTTTGAAGGAGCACACTTTAAGAGATGGAAGCATAAGATGTTGTTCTTCCTCAACTTGAAGAAAGTTGTCGCCGCATGTTCCACTGAAAAACCAAAGGTTCTAAAAAACCAATCCAATAGAGGAGCAAATCGACAGTCTTACAGCGTGGATAGAGACGAACTTCATCTGCAAGAATTTAATTCTTAA

mRNA sequence

ATGGCTGGACCTTTCCAAGGCGATTTGATGTCCTCTAACCTCAATCGTCATTTTTGCTTTGAAGGAGCACACTTTAAGAGATGGAAGCATAAGATGTTGTTCTTCCTCAACTTGAAGAAAGTTGTCGCCGCATGTTCCACTGAAAAACCAAAGGTTCTAAAAAACCAATCCAATAGAGGAGCAAATCGACAGTCTTACAGCGTGGATAGAGACGAACTTCATCTGCAAGAATTTAATTCTTAA

Coding sequence (CDS)

ATGGCTGGACCTTTCCAAGGCGATTTGATGTCCTCTAACCTCAATCGTCATTTTTGCTTTGAAGGAGCACACTTTAAGAGATGGAAGCATAAGATGTTGTTCTTCCTCAACTTGAAGAAAGTTGTCGCCGCATGTTCCACTGAAAAACCAAAGGTTCTAAAAAACCAATCCAATAGAGGAGCAAATCGACAGTCTTACAGCGTGGATAGAGACGAACTTCATCTGCAAGAATTTAATTCTTAA

Protein sequence

MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLKNQSNRGANRQSYSVDRDELHLQEFNS

Homology

[Close]

BLAST of IVF0004001 vs. ExPASy TrEMBL
Match: A0A5A7SLG1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G001100 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK 55
          MAG FQ DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPKVL+
Sbjct: 2  MAGQFQYDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVLE 55

[Close]

BLAST of IVF0004001 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV 53
          MAG  Q DLMSS+LNR F FEGAHFKRWK K+LFFL LKKV  AC+TEKPKV
Sbjct: 1  MAGQIQSDLMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKV 52

[Close]

BLAST of IVF0004001 vs. ExPASy TrEMBL
Match: A0A5A7THP6 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00330 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK 52
          MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPK
Sbjct: 1  MAGQIQSDLMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPK 51

[Close]

BLAST of IVF0004001 vs. ExPASy TrEMBL
Match: A0A5A7USR3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005210 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK 55
          MAG  Q DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKP+VL+
Sbjct: 1  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLE 54

[Close]

BLAST of IVF0004001 vs. ExPASy TrEMBL
Match: A0A5D3BEH3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold939G00100 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.1e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV 53
          MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEK KV
Sbjct: 1  MAGQIQSDLMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKV 52

[Close]

BLAST of IVF0004001 vs. NCBI nr
Match: KAA0042338.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK15463.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 2.04e-18
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK 51
          MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPK
Sbjct: 1  MAGQIQSDLMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPK 51

[Close]

BLAST of IVF0004001 vs. NCBI nr
Match: KAA0058200.1 (uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 3.98e-18
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL 53
          MAG  Q DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKP+VL
Sbjct: 1  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVL 53

[Close]

BLAST of IVF0004001 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 8.55e-18
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV 52
          MAG  Q DLMSS+LNR F FEGAHFKRWK K+LFFL LKKV  AC+TEKPKV
Sbjct: 1  MAGQIQSDLMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKV 52

[Close]

BLAST of IVF0004001 vs. NCBI nr
Match: KAA0025503.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.38e-17
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL 53
          MAG FQ DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPKVL
Sbjct: 2  MAGQFQYDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVL 54

[Close]

BLAST of IVF0004001 vs. NCBI nr
Match: KAA0033399.1 (hypothetical protein E6C27_scaffold111G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 5.96e-17
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV 52
          MAG  Q DLMS +LN+ F FEGAHFKRWK KMLFFL LKKV   C+TEKPKV
Sbjct: 2  MAGQIQSDLMSFDLNQPFHFEGAHFKRWKQKMLFFLTLKKVATTCTTEKPKV 53

The following BLAST results are available for this feature:

BLAST of IVF0004001 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLG1	2.9e-14	77.78	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417...	[more]
A0A5A7UYY4	1.4e-13	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7THP6	1.4e-13	78.43	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477...	[more]
A0A5A7USR3	1.9e-13	74.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BEH3	7.1e-13	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0004001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042338.1	2.04e-18	78.43	putative Polyprotein [Cucumis melo var. makuwa] >TYK15463.1 putative Polyprotein...	[more]
KAA0058200.1	3.98e-18	75.47	uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]	[more]
KAA0060458.1	8.55e-18	76.92	uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0025503.1	2.38e-17	79.25	putative Polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033399.1	5.96e-17	73.08	hypothetical protein E6C27_scaffold111G00500 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004001 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004001.1	IVF0004001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding