IVF0003990 (gene) Melon (IVF77) v1

Overview


Name	IVF0003990
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Alba domain-containing protein
Location	chr05: 24733042 .. 24734477 (+)
RNA-Seq Expression	IVF0003990
Synteny	IVF0003990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAGCCCTTCAATCGCCCTCTCCCCTTCCATTTTTCCCGCTCCTTCCAATTTTCCCCCATACTATTTCTCAACAAACCCAAAATTCTTCTCTCTGATTTCCTTCCATCTGCTTACCGGAAAATACAGAGATTTTTGTTTTACTCAGTGAGAAAGTGAAAAGTTTTAGCAATGGCGACGATTGCAGTATCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGGTATATGTATATGTGTATATATAGACATAAATCCCTCTTTCACTTCTTCCATTTCTTTCATTATTCGTTTGTTATAAAACTCAAAAAAATTATTACACCCGATTTCGTTATCGTTATGGTCTTCTTTTTAATGGAATCCCCAAGTTCGCAATGTATGAACGATTCATCGATAATCCGTGTTGTTCTTTAGATTTGCTTTCTCATTTGAGTAATTGGGTTTGTTTGTTTGTTTGTTTTTTTTTTTTCTGATTGGGAATTCTAATCGTTATTGTTTGCCCTAAATTCAGAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGGTATTGTTTTCGTTTCTTGTAGTTTCTTTTAACTTATGGATATATATCTGATGAATTTTTGGTTTTCTTGGCTCAAATCCTTCTTTGGAATATTACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAGTATGATCCATAATCTTTAATGTTAATCTCTCTTGATTAAAATGGTAATACTTTATTTTACCGATATTCTTTATGGTTTTGTTATGAAACAGAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTTGTTCAATTAGTTATGAATGTAGAGATATTGTTCTTGTAGGATCTATTGATTTTGGATCAGTATCTGGGTTCTCATAAAATGATTTGTACTTTTCAAAAATGGTTTTAATCCTCTCTGAAATCACTCTTCAACATTCTCTTTTTTGTGTTGAGATATTGAGAGTGTTGTTTTTGGTTTATTTTGTGATAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACAGCAGTACCGGAGACAGTGGTGGCCGTTGCGGCAGCTGGCGAGGAGGAGAAAAAAGCAGAGGAAAACAAGGAGGAGCAGTAGGGGGAAATTAAAGAGAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATCATAGGATAGGCTATTTTCATTTGAAATTCCTCTACTAGTTTTTCTTTGCATCTTTCTGGACAGTCACAGTTATGAATGAGATGTCATGCCATCAACC

mRNA sequence

CCGAAGCCCTTCAATCGCCCTCTCCCCTTCCATTTTTCCCGCTCCTTCCAATTTTCCCCCATACTATTTCTCAACAAACCCAAAATTCTTCTCTCTGATTTCCTTCCATCTGCTTACCGGAAAATACAGAGATTTTTGTTTTACTCAGTGAGAAAGTGAAAAGTTTTAGCAATGGCGACGATTGCAGTATCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACAGCAGTACCGGAGACAGTGGTGGCCGTTGCGGCAGCTGGCGAGGAGGAGAAAAAAGCAGAGGAAAACAAGGAGGAGCAGTAGGGGGAAATTAAAGAGAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATCATAGGATAGGCTATTTTCATTTGAAATTCCTCTACTAGTTTTTCTTTGCATCTTTCTGGACAGTCACAGTTATGAATGAGATGTCATGCCATCAACC

Coding sequence (CDS)

ATGGCGACGATTGCAGTATCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACAGCAGTACCGGAGACAGTGGTGGCCGTTGCGGCAGCTGGCGAGGAGGAGAAAAAAGCAGAGGAAAACAAGGAGGAGCAGTAG

Protein sequence

MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

Homology

[Close]

BLAST of IVF0003990 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-37
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 122
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 123 VA 125
            A
Sbjct: 125 EA 126

[Close]

BLAST of IVF0003990 vs. ExPASy TrEMBL
Match: A0A5D3D4G4 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001630 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.4e-65
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 TVVAVAAAGEEEKKAEENKEEQ 143
           TVVAVAAAGEEEKKAEENKEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of IVF0003990 vs. ExPASy TrEMBL
Match: A0A1S3C2U1 (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.4e-65
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 TVVAVAAAGEEEKKAEENKEEQ 143
           TVVAVAAAGEEEKKAEENKEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of IVF0003990 vs. ExPASy TrEMBL
Match: A0A0A0LG69 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.8e-63
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 122 VVAVAAAGEEEKKAEENKEEQ 143
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 123 VVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of IVF0003990 vs. ExPASy TrEMBL
Match: A0A6J1G2Y0 (uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450305 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.1e-54
Identity = 131/158 (82.91%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT          ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ 143
           MTAAT VPE  VA A A         EEKK EE+KEEQ
Sbjct: 121 MTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of IVF0003990 vs. ExPASy TrEMBL
Match: A0A6J1KEC8 (uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493582 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 131/163 (80.37%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 1   MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT          ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ 143
           MTAAT VPE  VA  A            A  EEKK EE+KEEQ
Sbjct: 121 MTAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of IVF0003990 vs. NCBI nr
Match: XP_008456222.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa] >TYK18437.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 2.45e-85
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 TVVAVAAAGEEEKKAEENKEEQ 142
           TVVAVAAAGEEEKKAEENKEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of IVF0003990 vs. NCBI nr
Match: XP_004139384.1 (uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 249 bits (637), Expect = 6.96e-83
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 122 VVAVAAAGEEEKKAEENKEEQ 142
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 123 VVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of IVF0003990 vs. NCBI nr
Match: XP_038877259.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 230 bits (587), Expect = 2.91e-75
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSGA  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGAA-ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 TVVAVA---AAGEEEKKAEENKE 140
            V  VA   AA EEEKKAEENKE
Sbjct: 121 VVETVATGAAAAEEEKKAEENKE 142

[Close]

BLAST of IVF0003990 vs. NCBI nr
Match: XP_022946134.1 (uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG7030319.1 hypothetical protein SDJN02_08666 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (560), Expect = 6.23e-71
Identity = 131/158 (82.91%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ 142
           MTAAT VPE  VA A A         EEKK EE+KEEQ
Sbjct: 121 MTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of IVF0003990 vs. NCBI nr
Match: XP_022999100.1 (uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima])

HSP 1 Score: 218 bits (556), Expect = 2.99e-70
Identity = 131/163 (80.37%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 1   MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ 142
           MTAAT VPE  VA  A            A  EEKK EE+KEEQ
Sbjct: 121 MTAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of IVF0003990 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-44
Identity = 102/138 (73.91%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 5   AVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 64
           A +  T   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 65  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT--AVPETV 124
           ILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T    PE  
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE- 143

Query: 125 VAVAAAGEEEKKAEENKE 141
               A+ E E   E  +E
Sbjct: 144 ---EASAETEASVEAQEE 157

[Close]

BLAST of IVF0003990 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-39
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 122
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 123 VA 125
            A
Sbjct: 125 EA 126

[Close]

BLAST of IVF0003990 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62
           T  V+    A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+
Sbjct: 5   TEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTV 64

Query: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 122
           AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM          
Sbjct: 65  AEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM---------- 124

Query: 123 VAVAAAGEEEKKAEENKEE 142
               AA  EEK+A E +E+
Sbjct: 125 ----AAANEEKEAAEAQEQ 129

The following BLAST results are available for this feature:

BLAST of IVF0003990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.1e-37	70.49	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of IVF0003990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4G4	8.4e-65	100.00	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C2U1	8.4e-65	100.00	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
A0A0A0LG69	7.8e-63	98.58	Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 S...	[more]
A0A6J1G2Y0	5.1e-54	82.91	uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KEC8	1.5e-53	80.37	uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of IVF0003990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456222.1	2.45e-85	100.00	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba D...	[more]
XP_004139384.1	6.96e-83	98.58	uncharacterized protein At2g34160 [Cucumis sativus]	[more]
XP_038877259.1	2.91e-75	93.71	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
XP_022946134.1	6.23e-71	82.91	uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG70303...	[more]
XP_022999100.1	2.99e-70	80.37	uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]	[more]

BLAST of IVF0003990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04620.1	4.7e-44	73.91	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	7.8e-39	70.49	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.7e-38	64.75	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 11..138
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..141 e-value: 1.3E-61 score: 204.9
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 11..138
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 17..141 e-value: 5.8E-52 score: 176.5
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 18..113
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 19..81 e-value: 2.9E-13 score: 49.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003990.2	IVF0003990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding