IVF0003972 (gene) Melon (IVF77) v1

Overview


Name	IVF0003972
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	chr04: 22450636 .. 22452283 (-)
RNA-Seq Expression	IVF0003972
Synteny	IVF0003972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGCTCCAATTCCAATTACTTGCTTTATTCCACGTATTGACGTCTCTCACAAAGAGTGAAGAGACAAAGAAATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGGTAAAACTTTCAAACTCTTCCTTGTCATCTTTTAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTCAAGATTTTCCTTTTTTTGTCCTATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAGCTCTATTTTATGTATAACATTAATGAACACAACAGCTTGAATCTAACTCCAACAACATCTAATGATGGATTCGATCCATCTCCAGTAGAATCTCATAGTGAACTATTGTTGGAGAGACCGATAGGGGTAAAGAATACTTTCCGAGAGAATGAGACTTCTTTCCTTTTCTTTTTCATTTTTTGTGAAGGAGCCTGCTGAAGAATCCATTTCTCAGCTCAAAGAGAATAGACATTGAACAATAACTTTTTAAGCAATTTAGAGAATTCAAACAGCATAAAATGAGAGCAATTCTACACAAAATGCTCTATCCGATAACTATACCACTAATAATTTCCCTATGTTTTTACCAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGGTAGCACTTTTTAATAATCAAAAAACGATAAAATTAAATAGCTTGTTCCTAGTTATCTGTATCACATCTATCCATGAAGTTTCATTTGATATCATTCCAACCAATGTTCTAACACTTACAATTATCTTAATCAAACAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACCACTTAGAAGTATGACAGCCATCTTAAACTTAACAGGTAATCTACGTTAAACCCGGGCTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTGAATGCAAATAGAATTAGCCTACTTATCAATAACCATTAATCTAAAAATACTACCAAGGTTCAATTGGAAGAAGTTAACAAAAAAGACTACCTCTTCCAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGAAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTTCAGGCTTTTGGAGCTTAGAAAATCTAAAGCATAG

mRNA sequence

TAAGGCTCCAATTCCAATTACTTGCTTTATTCCACGTATTGACGTCTCTCACAAAGAGTGAAGAGACAAAGAAATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGGTAAAACTTTCAAACTCTTCCTTGTCATCTTTTAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTCAAGATTTTCCTTTTTTTGTCCTATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAATCTACGTTAAACCCGGGCTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTTCAGGCTTTTGGAGCTTAGAAAATCTAAAGCATAG

Coding sequence (CDS)

ATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGGTAAAACTTTCAAACTCTTCCTTGTCATCTTTTAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTCAAGATTTTCCTTTTTTTGTCCTATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAATCTACGTTAAACCCGGGCTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTTCAGGCTTTTGGAGCTTAGAAAATCTAAAGCATAG

Protein sequence

MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFLQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA

Homology

[Close]

BLAST of IVF0003972 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 86  SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 145
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 146 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 205
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 206 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 265
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of IVF0003972 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.3e-121
Identity = 231/268 (86.19%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFL 60
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  QTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120
                                  RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL
Sbjct: 61  -----------------------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120

Query: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180
           EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV
Sbjct: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180

Query: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 240
           LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP
Sbjct: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 231

Query: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 269
           TVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of IVF0003972 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.3e-121
Identity = 231/268 (86.19%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFL 60
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  QTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120
                                  RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL
Sbjct: 61  -----------------------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120

Query: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180
           EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV
Sbjct: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180

Query: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 240
           LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP
Sbjct: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 231

Query: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 269
           TVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of IVF0003972 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.4e-113
Identity = 221/276 (80.07%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLS--------NS 60
           MAEAG LVTT RNINSISSSFNK APK  TQTFKIKASSKRNDISLVK +        ++
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLVKHNLLLVIFQISA 60

Query: 61  SLSSFRFLQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYL 120
            + S      F L+   FSS++            NKTTRRLITIST+GSRWQGKWTCDYL
Sbjct: 61  DIPSSIHTFLFHLMIFSFSSLNEAQI-------RNKTTRRLITISTAGSRWQGKWTCDYL 120

Query: 121 LSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREI 180
           LSLRDLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSFTRKCC CS PYCREI
Sbjct: 121 LSLRDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREI 180

Query: 181 KANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCS 240
            ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCS
Sbjct: 181 NANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCS 240

Query: 241 ESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 269
           E CEKSQPTVQYIGAQNAASIDKRW RLLELRKS +
Sbjct: 241 EMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 269

[Close]

BLAST of IVF0003972 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 8.0e-101
Identity = 202/267 (75.66%), Postives = 210/267 (78.65%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNK-PAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRF 60
           MAEAG LV    N+NSISSSFNK  APK  TQTFKIKASSKRNDISL             
Sbjct: 1   MAEAGHLV-AAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL------------- 60

Query: 61  LQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLN 120
                                   RRS+K  RRLITIST+GS WQGKW+CDYLLSL+D N
Sbjct: 61  ------------------------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFN 120

Query: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVL 180
           LEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVL
Sbjct: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQ 240
           VLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQ
Sbjct: 181 VLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQ 229

Query: 241 PTVQYIGAQNAASIDKRWFRLLELRKS 267
           P+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 241 PSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of IVF0003972 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.7e-99
Identity = 199/267 (74.53%), Postives = 207/267 (77.53%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNK-PAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRF 60
           MAEAG LV    N+NSISSSFNK  A K  TQ FKIKASSKRNDISL             
Sbjct: 1   MAEAGHLVAAA-NVNSISSSFNKAAASKFATQAFKIKASSKRNDISL------------- 60

Query: 61  LQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLN 120
                                   RRS+K  RRLITIST+GS WQG+W+CDYLLSL+D N
Sbjct: 61  ------------------------RRSSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFN 120

Query: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVL 180
           LEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTSF RKCCTCS PYCREI ANFNVL
Sbjct: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFIRKCCTCSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQ 240
           VLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQ
Sbjct: 181 VLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQ 229

Query: 241 PTVQYIGAQNAASIDKRWFRLLELRKS 267
           P+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 241 PSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of IVF0003972 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 438 bits (1126), Expect = 7.02e-154
Identity = 231/268 (86.19%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFL 60
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  QTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120
                                  RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL
Sbjct: 61  -----------------------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120

Query: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180
           EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV
Sbjct: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180

Query: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 240
           LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP
Sbjct: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 231

Query: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 268
           TVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 241 TVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of IVF0003972 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 406 bits (1044), Expect = 2.11e-141
Identity = 216/266 (81.20%), Postives = 218/266 (81.95%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFL 60
           MAEAG LVTT RNINSISSSFNK APK  TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISL-------------- 60

Query: 61  QTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120
                                   RSNKTTRRLITIST+GSRWQGKWTCDYLLSLRDLNL
Sbjct: 61  ------------------------RSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNL 120

Query: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180
           EDLVEDE+KNAHVFINLCIEKHASFGFTVDGRINTSFTRKCC CS PYCREI ANFNVLV
Sbjct: 121 EDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLV 180

Query: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 240
           LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQP
Sbjct: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQP 228

Query: 241 TVQYIGAQNAASIDKRWFRLLELRKS 266
           TVQYIGAQNAASIDKRW RLLELRKS
Sbjct: 241 TVQYIGAQNAASIDKRWSRLLELRKS 228

[Close]

BLAST of IVF0003972 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 401 bits (1031), Expect = 2.09e-139
Identity = 213/266 (80.08%), Postives = 218/266 (81.95%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRFL 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISL-------------- 60

Query: 61  QTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNL 120
                                  RRSNKTTRRLITIST+GSRWQGKWT DY+LSL+DLNL
Sbjct: 61  -----------------------RRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNL 120

Query: 121 EDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLV 180
           EDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSFTRKCC CS PYCREI ANFNVLV
Sbjct: 121 EDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLV 180

Query: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQP 240
           LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQP
Sbjct: 181 LSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQP 229

Query: 241 TVQYIGAQNAASIDKRWFRLLELRKS 266
           TVQYIGAQNAASIDKRW RLLELRKS
Sbjct: 241 TVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of IVF0003972 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 386 bits (992), Expect = 1.81e-133
Identity = 211/269 (78.44%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPA-PKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRF 60
           MAE G LVT  RNINSISSSFNK A PK  TQTFKI ASSKRNDISL             
Sbjct: 1   MAETGHLVTA-RNINSISSSFNKAAAPKYATQTFKITASSKRNDISL------------- 60

Query: 61  LQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLN 120
                                   RRSNKT+RRLITISTSGSRWQGKWT DYLLSLRDLN
Sbjct: 61  ------------------------RRSNKTSRRLITISTSGSRWQGKWTSDYLLSLRDLN 120

Query: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVL 180
           LEDLVEDEHKNA VFINLCIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVL
Sbjct: 121 LEDLVEDEHKNARVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQ 240
           VLSSNR NREIHLPDIGGDDPSVIYVKPGLEADLDS VRDTIRLTTSTKDTCSE CEKSQ
Sbjct: 181 VLSSNRTNREIHLPDIGGDDPSVIYVKPGLEADLDSFVRDTIRLTTSTKDTCSELCEKSQ 231

Query: 241 PTVQYIGAQNAASIDKRWFRLLELRKSKA 268
           PTVQYIGAQN ASIDKRW RLLELRKS A
Sbjct: 241 PTVQYIGAQNGASIDKRWSRLLELRKSNA 231

[Close]

BLAST of IVF0003972 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 371 bits (953), Expect = 1.57e-127
Identity = 202/267 (75.66%), Postives = 210/267 (78.65%), Query Frame = 0


Query: 1   MAEAGRLVTTTRNINSISSSFNKPA-PKSLTQTFKIKASSKRNDISLVKLSNSSLSSFRF 60
           MAEAG LV    N+NSISSSFNK A PK  TQTFKIKASSKRNDISL             
Sbjct: 1   MAEAGHLVAA-GNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL------------- 60

Query: 61  LQTFPLLFIQFSSISRFSFFCPMKRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLN 120
                                   RRS+K  RRLITIST+GS WQGKW+CDYLLSL+D N
Sbjct: 61  ------------------------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFN 120

Query: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVL 180
           LEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVL
Sbjct: 121 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQ 240
           VLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQ
Sbjct: 181 VLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQ 229

Query: 241 PTVQYIGAQNAASIDKRWFRLLELRKS 266
           P+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 241 PSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of IVF0003972 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-58
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 86  SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 145
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 146 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 205
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 206 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 265
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of IVF0003972 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-58
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 86  SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 145
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 146 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 205
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 206 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 265
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of IVF0003972 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	3.1e-57	60.00	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of IVF0003972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1F8	5.3e-121	86.19	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	5.3e-121	86.19	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A0A0L9P4	2.4e-113	80.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A6J1J5E3	8.0e-101	75.66	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	5.7e-99	74.53	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of IVF0003972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461873.1	7.02e-154	86.19	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_031738565.1	2.11e-141	81.20	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_011651803.2	2.09e-139	80.08	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_038906104.1	1.81e-133	78.44	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_022983270.1	1.57e-127	75.66	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of IVF0003972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	2.2e-58	60.00	Protein of unknown function (DUF177)	[more]
AT3G19800.2	2.2e-58	60.00	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 149..263 e-value: 1.0E-11 score: 45.0
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003972.1	IVF0003972.1	mRNA