IVF0003970 (gene) Melon (IVF77) v1

Overview


Name	IVF0003970
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S15a
Location	chr01: 26479363 .. 26479802 (+)
RNA-Seq Expression	IVF0003970
Synteny	IVF0003970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCATCTTCCATTCAAAAATCCTTTGAAGTTTTAATTTGGAAGGAGGGTGAGAGTTGGTCTTTTGATGATGGTCTTAAGAGCATGTACAATGCAAATAACCGTGGGAAACAACAGGTCATGATCATGTTGTCTTCCAAAGTTATCATCAAGTTTCTTCTGGTTTGCAGAAGCATAATTATATTAGTGAATTTGAGTTTGTCAATGATCATAGATCTGGAAAAATTGTTTTTGAATTCAACGATAGGCTGAACAAATGTGGGGTTATTAATCCTTGTTTTGACGTGGGTGTTAAGGAAATTGAAGGTTGAATTGCTAGGTTGCTCCATTCGAGACAGTTTGGATTCATTGTGTTGACAACTTCTGCTGGAATTATGGAACATGCAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTAGTTTCTTCTACTGA

mRNA sequence

ATGCCTCCATCTTCCATTCAAAAATCCTTTGAAGTTTTAATTTGGAAGGAGGGTGAGAGTTGGTCTTTTGATGATGGTCTTAAGAGCATGTACAATGCAAATAACCGTGGGAAACAACAGGTCATGATCATGTTGTCTTCCAAAGTTATCATCAAGTTTCTTCTGTTTGTCAATGATCATAGATCTGGAAAAATTGTTTTTGAATTCAACGATAGGCTGAACAAATGTGGGGTTATTAATCCTTGTTTTGACGTGGGTTTTGGATTCATTGTGTTGACAACTTCTGCTGGAATTATGGAACATGCAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTAGTTTCTTCTACTGA

Coding sequence (CDS)

ATGCCTCCATCTTCCATTCAAAAATCCTTTGAAGTTTTAATTTGGAAGGAGGGTGAGAGTTGGTCTTTTGATGATGGTCTTAAGAGCATGTACAATGCAAATAACCGTGGGAAACAACAGGTCATGATCATGTTGTCTTCCAAAGTTATCATCAAGTTTCTTCTGTTTGTCAATGATCATAGATCTGGAAAAATTGTTTTTGAATTCAACGATAGGCTGAACAAATGTGGGGTTATTAATCCTTGTTTTGACGTGGGTTTTGGATTCATTGTGTTGACAACTTCTGCTGGAATTATGGAACATGCAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTAGTTTCTTCTACTGA

Protein sequence

MPPSSIQKSFEVLIWKEGESWSFDDGLKSMYNANNRGKQQVMIMLSSKVIIKFLLFVNDHRSGKIVFEFNDRLNKCGVINPCFDVGFGFIVLTTSAGIMEHAEARRKNVGGKVLSFFY

Homology

[Close]

BLAST of IVF0003970 vs. ExPASy Swiss-Prot
Match: Q9LX88 (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 5.2e-33
Identity = 78/123 (63.41%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +DGLKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-32
Identity = 76/123 (61.79%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-31
Identity = 75/123 (60.98%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSM+NA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-31
Identity = 74/123 (60.16%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSM+NA  RGK+QVMI  SSKV+IKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy Swiss-Prot
Match: O80646 (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 70/123 (56.91%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSM NA  +GK+QVMI  SSKVIIKFL             +V+DHRSGKIV E N 
Sbjct: 8   NDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLN CGVI+P +D+G                FG+IVLTTSAGIM+H EAR+KNVGGKVL 
Sbjct: 68  RLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy TrEMBL
Match: A0A3N6S0C1 (Uncharacterized protein OS=Brassica cretica OX=69181 GN=DY000_00025936 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.6e-31
Identity = 77/123 (62.60%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+PCFDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPCFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy TrEMBL
Match: A0A6A4KFU8 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22777 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.6e-31
Identity = 77/107 (71.96%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+DHRSGKIV E N 
Sbjct: 22  NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNG 81

Query: 84  RLNKCGVINPCFDVGFGFIVLTTSAGIMEHAEARRKNVGGKVLSFFY 119
           RLNKCGVI+P FD  FGFIVLTTSAGIM+H EARRKNVGGKVL FFY
Sbjct: 82  RLNKCGVISPRFD--FGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 126

[Close]

BLAST of IVF0003970 vs. ExPASy TrEMBL
Match: A0A178VIE3 (RPS15AD OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g39900 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 78/123 (63.41%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +DGLKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy TrEMBL
Match: A0A1S3CPB7 (40S ribosomal protein S15a-1 OS=Cucumis melo OX=3656 GN=LOC103503055 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 79/123 (64.23%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. ExPASy TrEMBL
Match: A0A5A7SSH5 (40S ribosomal protein S15a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00840 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 79/123 (64.23%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. NCBI nr
Match: KAE9445325.1 (hypothetical protein C3L33_22777, partial [Rhododendron williamsianum])

HSP 1 Score: 142 bits (359), Expect = 3.45e-41
Identity = 77/107 (71.96%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+DHRSGKIV E N 
Sbjct: 22  NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNG 81

Query: 84  RLNKCGVINPCFDVGFGFIVLTTSAGIMEHAEARRKNVGGKVLSFFY 118
           RLNKCGVI+P FD  FGFIVLTTSAGIM+H EARRKNVGGKVL FFY
Sbjct: 82  RLNKCGVISPRFD--FGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 126

[Close]

BLAST of IVF0003970 vs. NCBI nr
Match: NP_190190.1 (ribosomal protein S15A D [Arabidopsis thaliana] >Q9LX88.3 RecName: Full=40S ribosomal protein S15a-4 [Arabidopsis thaliana] >KAG7627496.1 Ribosomal protein S8 superfamily [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7633440.1 Ribosomal protein S8 superfamily [Arabidopsis suecica] >AAK76511.1 putative cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] >AAM14312.1 putative cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] >AEE78104.1 ribosomal protein S15A D [Arabidopsis thaliana])

HSP 1 Score: 141 bits (356), Expect = 1.12e-40
Identity = 78/123 (63.41%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +DGLKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 118
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. NCBI nr
Match: XP_038706844.1 (40S ribosomal protein S15a-1-like [Tripterygium wilfordii] >KAF5744634.1 40S ribosomal protein S15a-1-like [Tripterygium wilfordii])

HSP 1 Score: 141 bits (355), Expect = 1.58e-40
Identity = 76/123 (61.79%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LK+MYNA  RGK+QVMI  SSKVIIKFLL            +V+DHR+GKIV E N 
Sbjct: 8   NDALKAMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 118
           RLNKCGVI+PCFDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPCFDVGVKEVEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. NCBI nr
Match: XP_004144630.1 (40S ribosomal protein S15a-1 [Cucumis sativus] >XP_008457542.1 PREDICTED: 40S ribosomal protein S15a-1 [Cucumis melo] >XP_008465450.1 PREDICTED: 40S ribosomal protein S15a-1 [Cucumis melo] >XP_011657911.1 40S ribosomal protein S15a-1 [Cucumis sativus] >XP_038893650.1 40S ribosomal protein S15a-1 [Benincasa hispida] >XP_038897125.1 40S ribosomal protein S15a-1 [Benincasa hispida] >KAA0033910.1 40S ribosomal protein S15a-1 [Cucumis melo var. makuwa] >BAA89231.1 wrp15a [Citrullus lanatus] >KAA0052378.1 40S ribosomal protein S15a-1 [Cucumis melo var. makuwa] >KAE8649788.1 hypothetical protein Csa_011988 [Cucumis sativus] >KAE8653230.1 hypothetical protein Csa_019672 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 1.58e-40
Identity = 79/123 (64.23%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 118
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. NCBI nr
Match: KAG5557696.1 (hypothetical protein RHGRI_007820 [Rhododendron griersonianum])

HSP 1 Score: 141 bits (356), Expect = 1.87e-40
Identity = 82/136 (60.29%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 11  EVLIWKEGESWSFDDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVN 70
           +VL  K       +D LKSMYNA  RGK+QVMI  SSKVIIKFLL            FV+
Sbjct: 12  QVLFAKMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVD 71

Query: 71  DHRSGKIVFEFNDRLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHA 118
           DHRSGKIV E N RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H 
Sbjct: 72  DHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHE 131

[Close]

BLAST of IVF0003970 vs. TAIR 10
Match: AT3G46040.1 (ribosomal protein S15A D )

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-34
Identity = 78/123 (63.41%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +DGLKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FGFIVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33
Identity = 76/123 (61.79%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33
Identity = 76/123 (61.79%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33
Identity = 76/123 (61.79%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSMYNA  RGK+QVMI  SSKVIIKFL+            +V+DHRSGKIV E N 
Sbjct: 8   NDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNG 67

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLNKCGVI+P FDVG                FG+IVLTTSAGIM+H EARRKNVGGKVL 
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

[Close]

BLAST of IVF0003970 vs. TAIR 10
Match: AT2G39590.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-29
Identity = 70/123 (56.91%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 24  DDGLKSMYNANNRGKQQVMIMLSSKVIIKFLL------------FVNDHRSGKIVFEFND 83
           +D LKSM NA  +GK+QVMI  SSKVIIKFL             +V+DHRSGKIV E N 
Sbjct: 14  NDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNG 73

Query: 84  RLNKCGVINPCFDVG----------------FGFIVLTTSAGIMEHAEARRKNVGGKVLS 119
           RLN CGVI+P +D+G                FG+IVLTTSAGIM+H EAR+KNVGGKVL 
Sbjct: 74  RLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLG 133

The following BLAST results are available for this feature:

BLAST of IVF0003970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX88	5.2e-33	63.41	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=...	[more]
P42798	5.7e-32	61.79	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q00332	1.7e-31	60.98	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]
Q9AT34	2.2e-31	60.16	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
O80646	3.8e-28	56.91	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=...	[more]

BLAST of IVF0003970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3N6S0C1	8.6e-31	62.60	Uncharacterized protein OS=Brassica cretica OX=69181 GN=DY000_00025936 PE=3 SV=1	[more]
A0A6A4KFU8	8.6e-31	71.96	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]
A0A178VIE3	1.9e-30	63.41	RPS15AD OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g39900 PE=3 SV=1	[more]
A0A1S3CPB7	2.5e-30	64.23	40S ribosomal protein S15a-1 OS=Cucumis melo OX=3656 GN=LOC103503055 PE=3 SV=1	[more]
A0A5A7SSH5	2.5e-30	64.23	40S ribosomal protein S15a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of IVF0003970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE9445325.1	3.45e-41	71.96	hypothetical protein C3L33_22777, partial [Rhododendron williamsianum]	[more]
NP_190190.1	1.12e-40	63.41	ribosomal protein S15A D [Arabidopsis thaliana] >Q9LX88.3 RecName: Full=40S ribo...	[more]
XP_038706844.1	1.58e-40	61.79	40S ribosomal protein S15a-1-like [Tripterygium wilfordii] >KAF5744634.1 40S rib...	[more]
XP_004144630.1	1.58e-40	64.23	40S ribosomal protein S15a-1 [Cucumis sativus] >XP_008457542.1 PREDICTED: 40S ri...	[more]
KAG5557696.1	1.87e-40	60.29	hypothetical protein RHGRI_007820 [Rhododendron griersonianum]	[more]

BLAST of IVF0003970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46040.1	3.7e-34	63.41	ribosomal protein S15A D	[more]
AT1G07770.1	4.1e-33	61.79	ribosomal protein S15A	[more]
AT1G07770.2	4.1e-33	61.79	ribosomal protein S15A	[more]
AT5G59850.1	4.1e-33	61.79	Ribosomal protein S8 family protein	[more]
AT2G39590.1	2.7e-29	56.91	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 84..118 e-value: 9.2E-9 score: 35.3
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 23..86 coord: 87..118
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 88..105
None	No IPR available	GENE3D	3.30.1490.10		coord: 74..118 e-value: 1.9E-17 score: 64.7
None	No IPR available	GENE3D	3.30.1370.30		coord: 23..73 e-value: 4.1E-9 score: 38.2
None	No IPR available	PANTHER	PTHR11758:SF39	OS02G0478600 PROTEIN	coord: 23..86 coord: 87..118
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 23..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003970.2	IVF0003970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0042788	polysomal ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome