IVF0003964 (gene) Melon (IVF77) v1

Overview


Name	IVF0003964
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 28302555 .. 28302910 (-)
RNA-Seq Expression	IVF0003964
Synteny	IVF0003964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAATAATCAAATTTTCAGTCTACATAGTACTTATAGTTGCTCTTCTCTTGCTTTCCAAATCTATATCGACTTCAGCCGATATCGATCATGATGAGATTTCCAACTCTAATAATAGAATACTTCGTCGAAGTCTCCTTCAGACAATGGATCGTCATCAAGTTGGGAATGGATATCAATACTCTATTAAAGACGAAGATACCAAAAAAGATGAGCATAAAAAATCTACAAAAAAAGCTCATTGTCCAAATAATAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGCGTTGGGTCTTTGCTATGTTTTAGTATTGTTTATGGTTTCTTTCTTTGAAGGTGAAGTGA

mRNA sequence

ATGGGTGCAATAATCAAATTTTCAGTCTACATAGTACTTATAGTTGCTCTTCTCTTGCTTTCCAAATCTATATCGACTTCAGCCGATATCGATCATGATGAGATTTCCAACTCTAATAATAGAATACTTCGTCGAAGTCTCCTTCAGACAATGGATCGTCATCAAGTTGGGAATGGATATCAATACTCTATTAAAGACGAAGATACCAAAAAAGATGAGCATAAAAAATCTACAAAAAAAGCTCATTGTCCAAATAATAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGCGTGAAGTGA

Coding sequence (CDS)

ATGGGTGCAATAATCAAATTTTCAGTCTACATAGTACTTATAGTTGCTCTTCTCTTGCTTTCCAAATCTATATCGACTTCAGCCGATATCGATCATGATGAGATTTCCAACTCTAATAATAGAATACTTCGTCGAAGTCTCCTTCAGACAATGGATCGTCATCAAGTTGGGAATGGATATCAATACTCTATTAAAGACGAAGATACCAAAAAAGATGAGCATAAAAAATCTACAAAAAAAGCTCATTGTCCAAATAATAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGCGTGAAGTGA

Protein sequence

MGAIIKFSVYIVLIVALLLLSKSISTSADIDHDEISNSNNRILRRSLLQTMDRHQVGNGYQYSIKDEDTKKDEHKKSTKKAHCPNNKSLANRSGTMLFGVK

Homology

[Close]

BLAST of IVF0003964 vs. ExPASy TrEMBL
Match: A0A0A0K5W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394030 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-31
Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MGAIIKFSVYIVLIVALLLLSKSISTSADIDHDEISNSNNRILRRSLLQTMDRHQVGNGY 60
           MGAIIK  VY+ ++VALLLLSK ISTSA +DHDEISNSNN ILRR+++QT +RH+VGNGY
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSA-VDHDEISNSNNGILRRNVIQTTNRHEVGNGY 60

Query: 61  QYSIKDEDTKKDEHKKSTKKAHCPNNKSLANRSGTMLFGV 101
           QYS+KDEDT +D HK+S KKAHC N KSLANRSGTMLFGV
Sbjct: 61  QYSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGV 99

[Close]

BLAST of IVF0003964 vs. ExPASy TrEMBL
Match: A0A0A0K580 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394050 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 69/100 (69.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MGAIIKFSVYIVLIVALLLLSKSISTSADIDHDEISNSNNRILRRSLLQTMDRHQVGNGY 60
           MGAIIK+ V I L+  LLLLSK +ST   +DH+EISNSNN +L R  LQ  D HQ+ NGY
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFV-VDHEEISNSNNIMLLRKSLQVTDGHQIANGY 60

Query: 61  QYSIKDEDTKKDEHKKSTKKAHCPNNKSLANRSGTMLFGV 101
           Q S+KDEDTKKDEHK+  KKAHCPN KSLANR GTMLFGV
Sbjct: 61  QNSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGV 99

[Close]

BLAST of IVF0003964 vs. NCBI nr
Match: KAE8646326.1 (hypothetical protein Csa_016649, partial [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 3.44e-41
Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MGAIIKFSVYIVLIVALLLLSKSISTSADIDHDEISNSNNRILRRSLLQTMDRHQVGNGY 60
           MGAIIK  VY+ ++VALLLLSK ISTSA +DHDEISNSNN ILRR+++QT +RH+VGNGY
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSA-VDHDEISNSNNGILRRNVIQTTNRHEVGNGY 60

Query: 61  QYSIKDEDTKKDEHKKSTKKAHCPNNKSLANRSGTMLFGV 100
           QYS+KDEDT +D HK+S KKAHC N KSLANRSGTMLFGV
Sbjct: 61  QYSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGV 99

[Close]

BLAST of IVF0003964 vs. NCBI nr
Match: KGN44885.1 (hypothetical protein Csa_016613 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 2.40e-34
Identity = 69/100 (69.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MGAIIKFSVYIVLIVALLLLSKSISTSADIDHDEISNSNNRILRRSLLQTMDRHQVGNGY 60
           MGAIIK+ V I L+  LLLLSK +ST   +DH+EISNSNN +L R  LQ  D HQ+ NGY
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFV-VDHEEISNSNNIMLLRKSLQVTDGHQIANGY 60

Query: 61  QYSIKDEDTKKDEHKKSTKKAHCPNNKSLANRSGTMLFGV 100
           Q S+KDEDTKKDEHK+  KKAHCPN KSLANR GTMLFGV
Sbjct: 61  QNSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGV 99

The following BLAST results are available for this feature:

BLAST of IVF0003964 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5W7	3.3e-31	76.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394030 PE=4 SV=1	[more]
A0A0A0K580	4.2e-26	69.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394050 PE=4 SV=1	[more]

BLAST of IVF0003964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646326.1	3.44e-41	76.00	hypothetical protein Csa_016649, partial [Cucumis sativus]	[more]
KGN44885.1	2.40e-34	69.00	hypothetical protein Csa_016613 [Cucumis sativus]	[more]

BLAST of IVF0003964 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003964.2	IVF0003964.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane