IVF0003934 (gene) Melon (IVF77) v1

Overview
NameIVF0003934
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 28898128 .. 28899124 (+)
RNA-Seq ExpressionIVF0003934
SyntenyIVF0003934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGAAGCTTTGAGTTATCGACAAGAAATTCAAAAGAAAACTTAAAGTTTCTAAGTTTAATTTACTTCAAAAGAAAAATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCTCGTAAGTCTCTTCTCTTTGTTTCTCCAAAAGAAAATTTGTTTGTTTCTTCGGAATTGGTTTCCTCGTGAATTTTTTGGTTATTCTATACAATTCCTTTGTTCTTTTATTGTTTGTGAAAAAGTCAGGAAGTTGATAGATTTTTTTTTTCTTTAATTGCAGATGCAACCATAATGTTGCTTCCATGAAAGAGTACGAACTTTCCATCCCATATTTTCTTTTTGTTTATTTTATTATACATGCTTTCCATATGAAAAACATGAATAGAGATTAAAACGATGAGAAACCACTTCTCTAATTTTTATTAATCATTCCAGTTAAGGGTAGTCGTATACACAATTTTAAAATACAACAATTTTAACTAAAACGAAGTCTTAATAGGGCATTTAAATATATTCACTTGTGGAAGTTTATGATCTAAATAAATAAAATTGAACTATTTTTGACAAGCAGGAACTTCGAAGGTGATTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCAATCCATGCAACTGCTAAATTTCAAAGCTTTCGATATGGAAAGCATACTAATTTACATATTAATGTGCTTCTAATGATTTGAATTATGTATCAAATGGTTGTGTGTGTGTATGTTGTTTGTCTGTATGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAACAACCTATTATTATATAATACTTGTATCTTGTTTTTTCCCCCTTCCAATGTCATTTCAAATAGGCCAGTTATGACTGGTTAATTTCTATTACTACTTTGCATCTATGATGTTGGATTCTTGTTTCTAATTTGATCTTTTAAGGTTTCATTACCTTTTATATTTAGTTCCTGCTCTGAAG

mRNA sequence

CAGGAAGCTTTGAGTTATCGACAAGAAATTCAAAAGAAAACTTAAAGTTTCTAAGTTTAATTTACTTCAAAAGAAAAATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCTCATGCAACCATAATGTTGCTTCCATGAAAGAGAACTTCGAAGGTGATTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCAATCCATGCAACTGCTAAATTTCAAAGCTTTCGATATGGAAAGCATACTAATTTACATATTAATGTGCTTCTAATGATTTGAATTATGTATCAAATGGTTGTGTGTGTGTATGTTGTTTGTCTGTATGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAACAACCTATTATTATATAATACTTGTATCTTGTTTTTTCCCCCTTCCAATGTCATTTCAAATAGGCCAGTTATGACTGGTTAATTTCTATTACTACTTTGCATCTATGATGTTGGATTCTTGTTTCTAATTTGATCTTTTAAGGTTTCATTACCTTTTATATTTAGTTCCTGCTCTGAAG

Coding sequence (CDS)

ATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCTCATGCAACCATAATGTTGCTTCCATGAAAGAGAACTTCGAAGGTGATTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCAATCCATGCAACTGCTAA

Protein sequence

MANCPCGSACNCTPNNCSCNHNVASMKENFEGDCGCNKCSCGDNCKCNPCNC
Homology
BLAST of IVF0003934 vs. ExPASy TrEMBL
Match: A0A6J1HPV6 (uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 1   MANCPCGSACNCTPNNCSCNHNVAS-MKENFEGDCGCNKCSCGDNCKCNPCNC 53
           M  C CGSACNC  NNCSC H+ A  MK+N  G      C CG NC C+PCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGG-----CKCGANCSCDPCNC 100

BLAST of IVF0003934 vs. ExPASy TrEMBL
Match: A0A6J1HS62 (uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 0

Query: 1   MANCPCGSACNCTPNNCSCNHNVASMKENFEGDCGCNKCSCGDNCKCNPCNC 53
           M  C CGSACNC  NNCSC H+ A + ++     G   C CG NC C+PCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGG---CKCGANCSCDPCNC 101

BLAST of IVF0003934 vs. NCBI nr
Match: KAE8649531.1 (hypothetical protein Csa_017930, partial [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 2.75e-30
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MANCPCGSACNCTPNNCSCNHNVASMKENFEGDCGCNKCSCGDNCKCNPCNC 52
          MANCPCGSACNC+PNNC+CNHNVASMKEN EG+CGCNKCSCGDNC CNPCNC
Sbjct: 43 MANCPCGSACNCSPNNCTCNHNVASMKENLEGNCGCNKCSCGDNCSCNPCNC 94

BLAST of IVF0003934 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 7.96e-10
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 1   MANCPCGSACNCTPNNCSCNHNVAS-MKENFEGDCGCNKCSCGDNCKCNPCNC 52
           M  C CGSACNC  NNCSC H+ A  MK+N  G C      CG NC C+PCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGGC-----KCGANCSCDPCNC 100

BLAST of IVF0003934 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 5.34e-08
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = 0

Query: 1   MANCPCGSACNCTPNNCSCNHNVASMKE--NFEGDCGCNKCSCGDNCKCNPCNC 52
           M  C CGSACNC  NNCSC H+ A + +  N  G C      CG NC C+PCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGGC-----KCGANCSCDPCNC 101

BLAST of IVF0003934 vs. NCBI nr
Match: XP_019199340.1 (PREDICTED: metallothionein-like protein type 2 [Ipomoea nil])

HSP 1 Score: 46.6 bits (109), Expect = 6.87e-05
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 0

Query: 2  ANCPCGSACNCT----------PNNCSCN-HNVASMKENFEGDC-----GCNKCSCGDNC 52
          ++C CGS+CNC           P++ S     VA MK +FEG       G + C CGDNC
Sbjct: 12 SSCSCGSSCNCRGFGIDADVEKPSSVSSLIQGVAPMKNSFEGGAEKATEGGHACKCGDNC 71

BLAST of IVF0003934 vs. NCBI nr
Match: KAG6541459.1 (hypothetical protein Mapa_017131 [Marchantia paleacea])

HSP 1 Score: 46.2 bits (108), Expect = 1.71e-04
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 0

Query: 4   CPCGSACNCTPNNCSCNHNVASMKENFE--GDCGCNK-CSCGDNCKCNPCNC 52
           C CG+ACNC+  N  C        E+ E  G  G N+ C CGDNC CNPCNC
Sbjct: 53  CSCGAACNCSTGNSCCPKRSVDSFESSEMRGFEGANEGCKCGDNCSCNPCNC 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HPV63.2e-0656.60uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS621.0e-0451.92uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
KAE8649531.12.75e-3090.38hypothetical protein Csa_017930, partial [Cucumis sativus][more]
XP_022966636.17.96e-1056.60uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima][more]
XP_022966635.15.34e-0851.85uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima][more]
XP_019199340.16.87e-0544.78PREDICTED: metallothionein-like protein type 2 [Ipomoea nil][more]
KAG6541459.11.71e-0450.00hypothetical protein Mapa_017131 [Marchantia paleacea][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003934.2IVF0003934.2mRNA