Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAAAAGCACATTTGTTTGTGAATGAAGAAAGGCTAAATTAGCCAAACAAACACAACACAGATCTCTAGTTGATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCGTGCTGTTGCTTCAACTGTTAGATCATGA
mRNA sequence
AGTAAAAGCACATTTGTTTGTGAATGAAGAAAGGCTAAATTAGCCAAACAAACACAACACAGATCTCTAGTTGATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCGTGCTGTTGCTTCAACTGTTAGATCATGA
Coding sequence (CDS)
ATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCGTGCTGTTGCTTCAACTGTTAGATCATGA
Protein sequence
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETMEEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS
Homology
BLAST of IVF0003918 vs. ExPASy TrEMBL
Match:
A0A5D3E454 (Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00970 PE=4 SV=1)
HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE
Sbjct: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM
Sbjct: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 174
EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS
Sbjct: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 173
BLAST of IVF0003918 vs. ExPASy TrEMBL
Match:
A0A0A0LT30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1)
HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0
Query: 2 DFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEEL 61
DFEQVLNLFDSFWFKR+IFNKHPFPSKEI GAES RRKPRGR+ RG+ENRSQLELEFEEL
Sbjct: 3 DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAES-RRKPRGRKTRGAENRSQLELEFEEL 62
Query: 62 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETME 121
KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEE E+KLC GEISRPYLSEAWETM
Sbjct: 63 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLC-GEISRPYLSEAWETM- 122
Query: 122 EEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVR 173
EEEEEEEEEEEKVELKKPL MKW+FPSNEIHMKVNLKWWA AVAST++
Sbjct: 123 ---EEEEEEEEEEEKVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167
BLAST of IVF0003918 vs. ExPASy TrEMBL
Match:
A0A0A0LV26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 125/260 (48.08%), Postives = 140/260 (53.85%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MDF+ +LNLFDSFWF+R++ N HPFP
Sbjct: 1 MDFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISED 60
Query: 61 ----------------------------SKEITGAES----------------RRRKPRG 120
SK+I GAES RR+ RG
Sbjct: 61 LSSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRG 120
Query: 121 RRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKR--------- 173
RR R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGKR
Sbjct: 121 RRTRRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKREEKGNKEGE 180
BLAST of IVF0003918 vs. ExPASy TrEMBL
Match:
A0A6J1KR35 (uncharacterized protein LOC111495710 OS=Cucurbita maxima OX=3661 GN=LOC111495710 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 7.1e-42
Identity = 122/254 (48.03%), Postives = 132/254 (51.97%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MD EQVLNLFDSFWF+REIFNKHPFP
Sbjct: 1 MDVEQVLNLFDSFWFEREIFNKHPFPTNPQNPRPENQDRDPLKNSPPEEPFVPRICPRSI 60
Query: 61 -------------------------------SKEITGAE--------------SRRRKPR 120
SK+I G E +RR+
Sbjct: 61 SEDLSSKLTFMSDSSSPDSVLFSPKLQTILSSKDIAGEEPPEKSRRVVIRQKRKQRRRIG 120
Query: 121 GRRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKR---EEEEE 173
GR IRGSE+RS ELEFEELKGFMDLGFVFSE DK S LA IVPGLN LGKR EEEEE
Sbjct: 121 GRSIRGSESRSLSELEFEELKGFMDLGFVFSEGDKSSSLAWIVPGLNRLGKRDEEEEEEE 180
BLAST of IVF0003918 vs. ExPASy TrEMBL
Match:
A0A5A7UPL7 (DUF1685 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002460 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 110/172 (63.95%), Postives = 118/172 (68.60%), Query Frame = 0
Query: 25 FPSKEITGAES----------------RRRKPRGRRIRGSENRSQLELEFEELKGFMDLG 84
F SK+I GAES RR+ RGRR R SE+RS ELEFEELKGFMDLG
Sbjct: 84 FSSKDIAGAESPETSRKLEIERRPKTEYRRRFRGRRTRRSESRSLSELEFEELKGFMDLG 143
Query: 85 FVFSEEDKGSILASIVPGLNWLGKR--------EEEEEGEEKLCAGEISRPYLSEAWETM 144
FVFSEEDKGS LASIVPGLN LGK+ EEEEE EE+ GEISRPYLSEAWE M
Sbjct: 144 FVFSEEDKGSSLASIVPGLNRLGKKEEKESKEEEEEEEEEERKLGGEISRPYLSEAWEAM 203
Query: 145 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVR 173
EEEEE+EE KKPL MKW+FPSN+I MK NLKWWA AVASTVR
Sbjct: 204 EEEEEKEE---------LAKKPLMMKWRFPSNQIDMKDNLKWWAHAVASTVR 246
BLAST of IVF0003918 vs. NCBI nr
Match:
KAA0035650.1 (cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa] >TYK30893.1 cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa])
HSP 1 Score: 332 bits (852), Expect = 1.14e-114
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE
Sbjct: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM
Sbjct: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 173
EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS
Sbjct: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 173
BLAST of IVF0003918 vs. NCBI nr
Match:
XP_011648467.1 (uncharacterized protein LOC105434476 [Cucumis sativus])
HSP 1 Score: 287 bits (735), Expect = 6.34e-97
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0
Query: 2 DFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEEL 61
DFEQVLNLFDSFWFKR+IFNKHPFPSKEI GAESRR KPRGR+ RG+ENRSQLELEFEEL
Sbjct: 3 DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRR-KPRGRKTRGAENRSQLELEFEEL 62
Query: 62 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETME 121
KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEE E+KLC GEISRPYLSEAWETME
Sbjct: 63 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLC-GEISRPYLSEAWETME 122
Query: 122 EEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVR 172
EEEEEEEEEE KVELKKPL MKW+FPSNEIHMKVNLKWWA AVAST++
Sbjct: 123 EEEEEEEEEE----KVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167
BLAST of IVF0003918 vs. NCBI nr
Match:
XP_038895821.1 (uncharacterized protein LOC120083990 [Benincasa hispida])
HSP 1 Score: 231 bits (590), Expect = 5.94e-75
Identity = 130/172 (75.58%), Postives = 142/172 (82.56%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQ+LNLFD FWF+ +IFNKHPF SKEI GAESRRR RGRR+RG E+RS LELE EE
Sbjct: 1 MDFEQILNLFDLFWFESKIFNKHPFSSKEIAGAESRRRL-RGRRMRGWESRSLLELELEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGS LASIVPGLN +GKREEEEE E K C+ EISRPYLSEAW+ M
Sbjct: 61 LKGFMDLGFVFSEEDKGSSLASIVPGLNRIGKREEEEE-ERKFCS-EISRPYLSEAWKAM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVR 172
EEEE+EEE LKK L MKWKFPSN++HMKV+LKWWA VASTVR
Sbjct: 121 EEEEDEEE----------LKKSLMMKWKFPSNQMHMKVHLKWWAHVVASTVR 159
BLAST of IVF0003918 vs. NCBI nr
Match:
XP_038895996.1 (uncharacterized protein LOC120084174 [Benincasa hispida])
HSP 1 Score: 201 bits (512), Expect = 5.65e-62
Identity = 133/251 (52.99%), Postives = 140/251 (55.78%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPS--------------------------------- 60
MDFEQ+LNLFDSFWF+ EIFNKHPFPS
Sbjct: 1 MDFEQLLNLFDSFWFEHEIFNKHPFPSNPQNPQPENQDNSLPKEPFIVPRLRTRSISEDL 60
Query: 61 ----------------------------KEITGAES----------------RRRKPRGR 120
K+I GAES RRK RGR
Sbjct: 61 SSKLSFMSNSNSPDSVLFSPKLQTIFSSKDIAGAESPENSRKVGIERRPKTESRRKLRGR 120
Query: 121 RIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEE--EEGEE 172
R+R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGK EEE EE EE
Sbjct: 121 RMRRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKTEEEDIEEEEE 180
BLAST of IVF0003918 vs. NCBI nr
Match:
KAA0057058.1 (DUF1685 domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 193 bits (490), Expect = 1.51e-58
Identity = 130/255 (50.98%), Postives = 141/255 (55.29%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPF----------------------------------- 60
MDFEQ+LNLFDSFWF+R +FNKHPF
Sbjct: 1 MDFEQLLNLFDSFWFERGVFNKHPFLSNLQPQIQDPDSLPKESFIIPRLPTRSISEDLSS 60
Query: 61 ------------------------PSKEITGAESR----------------RRKPRGRRI 120
SK+I GAES RR+ RGRR
Sbjct: 61 KLSFMSSSNSPDSVLFSPKLQTIFSSKDIAGAESPETSRKLEIERRPKTEYRRRFRGRRT 120
Query: 121 RGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREE--------EE 172
R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGK+EE EE
Sbjct: 121 RRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKKEEKESKEEEEEE 180
BLAST of IVF0003918 vs. TAIR 10
Match:
AT2G42760.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )
HSP 1 Score: 94.4 bits (233), Expect = 9.9e-20
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 0
Query: 34 ESRRRKPRGRRIRGSENRSQLELEFEELKGFMDLGFVFSEED-KGSILASIVPGLNWLGK 93
E R++K + +R + +S +LE+EELKGFMDLGFVFSE+D K S L SI+PGL L K
Sbjct: 128 EQRKKKKKKSNVRTRKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVK 187
Query: 94 R-------EEEEEGEEKLCAGEISRPYLSEAWETMEEEEEEEEEEEEEEEKVELKKPLKM 153
+ EEEEE E+K+ +RPYLSEAW+ + +++ E +
Sbjct: 188 KDDGVTKEEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPE------------I 247
Query: 154 KWKFP----SNEIHMKVNLKWWARAVASTVRS 174
KW+ P ++E+ +K NL+ WA AVAST+RS
Sbjct: 248 KWRVPAPAAASEVDLKDNLRLWAHAVASTIRS 267
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E454 | 1.7e-88 | 100.00 | Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A0A0LT30 | 4.9e-75 | 89.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1 | [more] |
A0A0A0LV26 | 2.0e-44 | 48.08 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1 | [more] |
A0A6J1KR35 | 7.1e-42 | 48.03 | uncharacterized protein LOC111495710 OS=Cucurbita maxima OX=3661 GN=LOC111495710... | [more] |
A0A5A7UPL7 | 3.5e-41 | 63.95 | DUF1685 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035650.1 | 1.14e-114 | 100.00 | cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa] >TYK30893.1 cyclin-d... | [more] |
XP_011648467.1 | 6.34e-97 | 89.47 | uncharacterized protein LOC105434476 [Cucumis sativus] | [more] |
XP_038895821.1 | 5.94e-75 | 75.58 | uncharacterized protein LOC120083990 [Benincasa hispida] | [more] |
XP_038895996.1 | 5.65e-62 | 52.99 | uncharacterized protein LOC120084174 [Benincasa hispida] | [more] |
KAA0057058.1 | 1.51e-58 | 50.98 | DUF1685 domain-containing protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT2G42760.1 | 9.9e-20 | 42.76 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685... | [more] |