IVF0003901 (gene) Melon (IVF77) v1

Overview


Name	IVF0003901
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pectin lyase-like superfamily protein
Location	chr04: 27663539 .. 27663837 (+)
RNA-Seq Expression	IVF0003901
Synteny	IVF0003901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTACATCTAAAATTAGGCCTCCTTAGTTTTGAACTTATTAATTAACTCAAAAGACATCAATAATATTATTGTTCGAGTTATGTATTTTTATTATGTTTTCTTTGTTTGTTCAGGTTCCATAA

mRNA sequence

ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAA

Coding sequence (CDS)

ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAA

Protein sequence

MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

Homology

[Close]

BLAST of IVF0003901 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-19
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +K C L +T NGVRIKTWPD+ GT   +D+HFEDI M NV NP+IIDQEY PWNQC++K 
Sbjct: 263 VKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKN 322

Query: 61  P 62
           P
Sbjct: 323 P 323

[Close]

BLAST of IVF0003901 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-16
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +K C L  T+NG+RIKTWP +  T     +HFEDI +  VSNPI+IDQEYCPWNQCN+  
Sbjct: 254 VKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNK 313

Query: 61  P 62
           P
Sbjct: 314 P 314

[Close]

BLAST of IVF0003901 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +K C    T NGVRIK+W +S      +D+HFEDI + NV NP+IIDQEYCP+N C  K 
Sbjct: 263 VKNCSFTDTDNGVRIKSWMNSFEA-SASDLHFEDITVTNVLNPVIIDQEYCPYNHCKEKT 322

Query: 61  P 62
           P
Sbjct: 323 P 322

[Close]

BLAST of IVF0003901 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR 59
           +  C + +T+NG RIKTWP   G    +++HFEDI M NVS+PI+IDQ+YCPWN+C +
Sbjct: 265 ISNCTITNTSNGARIKTWPGEHGG-AVSEIHFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of IVF0003901 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR 59
           +  C + +T+NG RIKTWP   G    +++HFEDI M NVS+PI+IDQ+YCPWN+C +
Sbjct: 265 ISNCTITNTSNGARIKTWPGEHGG-AVSEIHFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of IVF0003901 vs. ExPASy TrEMBL
Match: A0A5A7ULW5 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006240 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-27
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 260 VKKCKLTSTTNGVRIKTWPDSVGTFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

Query: 61  P 62
           P
Sbjct: 320 P 320

[Close]

BLAST of IVF0003901 vs. ExPASy TrEMBL
Match: A0A1S3B3X5 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-27
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 260 VKKCKLTSTTNGVRIKTWPDSVGTFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

Query: 61  P 62
           P
Sbjct: 320 P 320

[Close]

BLAST of IVF0003901 vs. ExPASy TrEMBL
Match: A0A0A0LX75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK 60
           +KKCKL STTNGVRIKTWPDSVGTFP TDMHFEDIEM NVSNPIIIDQEYCPWNQCNRK
Sbjct: 164 VKKCKLTSTTNGVRIKTWPDSVGTFPATDMHFEDIEMDNVSNPIIIDQEYCPWNQCNRK 222

[Close]

BLAST of IVF0003901 vs. ExPASy TrEMBL
Match: A0A6J1C2U8 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007858 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-25
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDS G F  +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 268 VKKCKLTSTTNGVRIKTWPDSAGAFIASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 327

Query: 61  P 62
           P
Sbjct: 328 P 328

[Close]

BLAST of IVF0003901 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 260 VKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

Query: 61  P 62
           P
Sbjct: 320 P 320

[Close]

BLAST of IVF0003901 vs. NCBI nr
Match: XP_011652893.2 (exopolygalacturonase [Cucumis sativus] >KGN64588.2 hypothetical protein Csa_014082 [Cucumis sativus])

HSP 1 Score: 131 bits (329), Expect = 1.00e-34
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDSVGTFP TDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV
Sbjct: 262 VKKCKLTSTTNGVRIKTWPDSVGTFPATDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 321

[Close]

BLAST of IVF0003901 vs. NCBI nr
Match: XP_008441641.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo] >KAA0056903.1 exopolygalacturonase-like [Cucumis melo var. makuwa] >TYJ99406.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 5.24e-34
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 260 VKKCKLTSTTNGVRIKTWPDSVGTFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

[Close]

BLAST of IVF0003901 vs. NCBI nr
Match: XP_008449943.2 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 120 bits (300), Expect = 1.15e-32
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
          +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRKV
Sbjct: 26 VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 85

[Close]

BLAST of IVF0003901 vs. NCBI nr
Match: XP_038895545.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 124 bits (310), Expect = 5.97e-32
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL +T+NGVRIKTWPDSVG FP  DMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV
Sbjct: 262 VKKCKLINTSNGVRIKTWPDSVGAFPAIDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 321

[Close]

BLAST of IVF0003901 vs. NCBI nr
Match: XP_022136075.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 122 bits (305), Expect = 3.47e-31
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +KKCKL STTNGVRIKTWPDS G F  +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKV
Sbjct: 268 VKKCKLTSTTNGVRIKTWPDSAGAFIASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 327

[Close]

BLAST of IVF0003901 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP 62
           C L  T NG+RIKTWP +  T   +D+HFE+I + NVSNPI+IDQEYCPWNQCN++ P
Sbjct: 257 CTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKP 314

[Close]

BLAST of IVF0003901 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-17
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK 60
           C L  T NG+RIKTWP +  +   +D+HFEDI + +VSNPI+IDQEYCPWNQCN++
Sbjct: 257 CTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQ 312

[Close]

BLAST of IVF0003901 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-16
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP 62
           C L  T NG+RIKTWP +      + +HFE+I + NVSNPI+IDQEYCPWNQCN++ P
Sbjct: 258 CTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKP 315

[Close]

BLAST of IVF0003901 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-16
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK 60
           C L  T NG+RIKTWP +  +   +++HFE+I + NVSNPI+IDQEYCPWNQCN++
Sbjct: 258 CTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQ 313

[Close]

BLAST of IVF0003901 vs. TAIR 10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKV 60
           +K CK++ TTNG+RIKTW +S G    T+M FE+I M NV+NPIIIDQ YCP++ C   V
Sbjct: 270 VKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNV 329

Query: 61  P 62
           P
Sbjct: 330 P 330

The following BLAST results are available for this feature:

BLAST of IVF0003901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	1.3e-19	65.57	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P35337	1.0e-16	59.02	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
W8P8Q3	1.1e-13	54.10	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
Q39766	1.4e-13	53.45	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	1.4e-13	53.45	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of IVF0003901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULW5	3.9e-27	91.80	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B3X5	3.9e-27	91.80	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1	[more]
A0A0A0LX75	1.2e-25	93.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1	[more]
A0A6J1C2U8	6.2e-25	86.89	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007858 PE=3 SV...	[more]
A0A5A7TRZ0	1.4e-24	85.25	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of IVF0003901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652893.2	1.00e-34	95.08	exopolygalacturonase [Cucumis sativus] >KGN64588.2 hypothetical protein Csa_0140...	[more]
XP_008441641.1	5.24e-34	91.80	PREDICTED: exopolygalacturonase-like [Cucumis melo] >KAA0056903.1 exopolygalactu...	[more]
XP_008449943.2	1.15e-32	83.61	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
XP_038895545.1	5.97e-32	88.52	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_022136075.1	3.47e-31	86.89	exopolygalacturonase-like [Momordica charantia]	[more]

BLAST of IVF0003901 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48140.1	3.3e-18	62.07	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	3.6e-17	60.71	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	1.0e-16	58.62	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	1.8e-16	58.93	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	1.2e-15	57.38	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..59 e-value: 1.5E-17 score: 63.7
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..61 e-value: 3.8E-15 score: 57.5
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..57
None	No IPR available	PANTHER	PTHR31375:SF132	OS06G0509600 PROTEIN	coord: 2..57
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003901.1	IVF0003901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity