IVF0003892 (gene) Melon (IVF77) v1

Overview


Name	IVF0003892
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr07: 3803419 .. 3805406 (-)
RNA-Seq Expression	IVF0003892
Synteny	IVF0003892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAGAAAAATGTCACAAAAAAAAAAAGCCAAAGAGGAAGAAAGAACAAAGAATGAAGTGAAGAGATGCTATTGCTATATATATAAACGCCACTCTCCTAAATTCTCACAATTCACAGCGCCACACACACAAACCTAAATCCATCGAGAAAGAAGACAACTTTCGGTCCATTTTCACGGATTCGGATTCAGCTTTCGCATCAATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGGCTAGACCTGGCCTGAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAACCCGGTACCAATGGTCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGGCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGGTATGGATTTTTTAATCTTCCATTTGCTTCTGTTTGGTTTCGGGGGAATTGGGGAAAATTAGGTTTTTTTTTTTTAATCGTAGCTGGGGGGGATAAATCATTGATTTTTTAGGTTGGGGTATTTGAATTATGTACCCTTTAGCAATTAGAACTTGCCATTTTAATGCACTATTAAACCGATGTTTGACACAATGATATAACATGAATTCTGAGATGGATTTTGGAGAATGACGTAGTTCTTGCTGATGTGCTTAAGGAAACTTGGACGTAGAAATAAGAGGCATTTGTTTTATGAATTGCATAAAGAAGCATTGATTTTGCTCTAATCTGAACTGGATGCGGATTTAGAAATTTACTGTCTTGCACTAGGATTTGTGTTGGGTTATGCATGGCTATGAATAGTCTAATTCCTGTGGTTTCATGATCTTTATTCATACGCCGAGCTTGTCTCGAATTGGAACATTATTTTTTTTTAATACTAACTGTATGCTAATGCCCCAAGGGATGGCCCCTTTGGGAAGGGCTTGTGTCTCTTGGTTATAAAGATTCCAATTTTTTTTCCTTCGAGTGAGCTTAATACCAAAAAGTCTTGATTGATGTCTCCAAGGTCCAAACCTCAGGGGCGGGTGCAGGGTGGCCTTGGGTATAGCGAAGAAAGATCCGATGGATATGATGATGATTTTAACTGAAACTGAAAGTTTGATGTTAACTCCTCACAAATACATAGCCTTGGGTCTGTGGACTGTTGCCACTTGAGTTTTTAGCCTTGAAGTGGAGTTCTTGTAAACAACGAGAATGGGATATTGATATGCACTGGACCAATTTTCATGGTTACCAATACTTGGAAAGCATAATTAATTTAATCTTTTGTTTTTTTGGTACCTCAGCATTTAAACTTCTCAAAAGTTTTGAATGGGTTATTTTGTTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGATTGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGGTACTACTGAATGCCAACTTTAAGACAATGGGTTGAGATGGCTGGTCAGTGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTATAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATTCCGTCGGTTTGACTTACACAAAGCCATGTTTTGTCGGGTAAAGGTATAAATAGGTACTAGTTTGGTACTTGTTATAACTCTGGAAATGTAATAGAGCGTTAACGACGGCAAAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTTTCAATTTGCTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTGGAC

mRNA sequence

GTTTAGAAAAATGTCACAAAAAAAAAAAGCCAAAGAGGAAGAAAGAACAAAGAATGAAGTGAAGAGATGCTATTGCTATATATATAAACGCCACTCTCCTAAATTCTCACAATTCACAGCGCCACACACACAAACCTAAATCCATCGAGAAAGAAGACAACTTTCGGTCCATTTTCACGGATTCGGATTCAGCTTTCGCATCAATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGGCTAGACCTGGCCTGAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAACCCGGTACCAATGGTCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGGCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGATTGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGGTACTACTGAATGCCAACTTTAAGACAATGGGTTGAGATGGCTGGTCAGTGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTATAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATTCCGTCGGTTTGACTTACACAAAGCCATGTTTTGTCGGGTAAAGGTATAAATAGGTACTAGTTTGGTACTTGTTATAACTCTGGAAATGTAATAGAGCGTTAACGACGGCAAAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTTTCAATTTGCTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTGGAC

Coding sequence (CDS)

ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGGCTAGACCTGGCCTGAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAACCCGGTACCAATGGTCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGGCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGATTGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

Homology

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BLAST of IVF0003892 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 26  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDN 145
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE      F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNV 152
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

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BLAST of IVF0003892 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.2e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.2e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. ExPASy TrEMBL
Match: A0A6J1CG19 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111010472 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.5e-70
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS E+QQ+NA ARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 144

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BLAST of IVF0003892 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 Nucleic acid-binding [Cucumis melo var. makuwa] >TYK27951.1 Nucleic acid-binding [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (768), Expect = 1.75e-102
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154
           KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. NCBI nr
Match: XP_004146043.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_012716 [Cucumis sativus])

HSP 1 Score: 297 bits (761), Expect = 2.04e-101
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 296 bits (758), Expect = 5.85e-101
Identity = 151/154 (98.05%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQ+NAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154
           KWGRIE+A+PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of IVF0003892 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 273 bits (697), Expect = 1.17e-91
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS E+QQ+NA ARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of IVF0003892 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (668), Expect = 2.20e-87
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144

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BLAST of IVF0003892 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-50
Identity = 103/156 (66.03%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 4   GKSPTPASQELQ----QTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK- 63
           G++P P S   +    Q         +KPVFVK++QLKPGT+GHTL VKVV  N+V QK 
Sbjct: 27  GRNPPPPSSSTRTSQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKP 86

Query: 64  GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLA 123
           G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLA
Sbjct: 87  GAASSSHLRPARISECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLA 146

Query: 124 VDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 155
           VDKWGRIE  +P D  VKEDNNLSLVEYELVNV EE
Sbjct: 147 VDKWGRIEATEPADITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of IVF0003892 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.4e-48
Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 20  AARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDE 79
           + + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDE
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDE 63

Query: 80  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDN 139
           TG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+E+ +P  F VKED 
Sbjct: 64  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 123

Query: 140 NLSLVEYELVNVAE 154
           N+SL+EYELVNV E
Sbjct: 124 NMSLIEYELVNVVE 137

[Close]

BLAST of IVF0003892 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 89/136 (65.44%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 19  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLV 78
           A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLV
Sbjct: 2   AEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLV 61

Query: 79  GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIA-DPEDFVV 138
           GDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  V
Sbjct: 62  GDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITV 121

Query: 139 KEDNNLSLVEYELVNV 152
           K+DNNLSL+EYELV+V
Sbjct: 122 KDDNNLSLIEYELVSV 137

[Close]

BLAST of IVF0003892 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 89/136 (65.44%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 19  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLV 78
           A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLV
Sbjct: 16  AEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLV 75

Query: 79  GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIA-DPEDFVV 138
           GDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  V
Sbjct: 76  GDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITV 135

Query: 139 KEDNNLSLVEYELVNV 152
           K+DNNLSL+EYELV+V
Sbjct: 136 KDDNNLSLIEYELVSV 151

[Close]

BLAST of IVF0003892 vs. TAIR 10
Match: AT1G10590.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 89/136 (65.44%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 19  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLV 78
           A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLV
Sbjct: 2   AEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLV 61

Query: 79  GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEIA-DPEDFVV 138
           GDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  V
Sbjct: 62  GDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITV 121

Query: 139 KEDNNLSLVEYELVNV 152
           K+DNNLSL+EYELV+V
Sbjct: 122 KDDNNLSLIEYELVSV 137

The following BLAST results are available for this feature:

BLAST of IVF0003892 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	6.5e-44	67.42	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of IVF0003892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWE0	3.2e-78	100.00	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	3.2e-78	100.00	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A0A0L242	2.1e-77	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]
A0A6J1CG19	5.5e-70	89.61	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FBC1	1.3e-66	87.66	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of IVF0003892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463705.1	1.75e-102	100.00	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 N...	[more]
XP_004146043.1	2.04e-101	98.70	uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical pro...	[more]
XP_038899654.1	5.85e-101	98.05	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_022139613.1	1.17e-91	89.61	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	2.20e-87	88.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0003892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	6.2e-50	66.03	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	3.4e-48	64.93	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	1.6e-45	65.44	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.6e-45	65.44	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.2	1.6e-45	65.44	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 40..143 e-value: 3.8E-44 score: 151.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 9..154
None	No IPR available	PANTHER	PTHR31472:SF26	SUBFAMILY NOT NAMED	coord: 9..154
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 44..127 e-value: 1.56015E-18 score: 73.0409
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 22..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003892.2	IVF0003892.2	mRNA